Wall clock time and date at job start Mon Mar 30 2020 02:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46817 * 2 1 4 4 N 1.46897 * 109.47211 * 119.99964 * 2 1 3 5 5 C 1.46961 * 110.99751 * 186.39230 * 4 2 1 6 6 C 1.53048 * 109.36313 * 176.81233 * 5 4 2 7 7 H 1.09000 * 109.49233 * 298.43393 * 6 5 4 8 8 C 1.50698 * 109.50713 * 178.38132 * 6 5 4 9 9 H 1.07997 * 119.99926 * 0.05410 * 8 6 5 10 10 C 1.37880 * 119.99754 * 180.02562 * 8 6 5 11 11 N 1.31513 * 120.00257 * 359.97438 * 10 8 6 12 12 Si 1.86810 * 119.99752 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47310 * 59.99685 * 12 10 8 14 14 H 1.48497 * 109.46936 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46839 * 299.99735 * 12 10 8 16 16 N 1.46959 * 109.36497 * 58.40097 * 6 5 4 17 17 C 1.46957 * 110.87752 * 300.67936 * 16 6 5 18 18 C 1.46949 * 110.99996 * 62.59390 * 4 2 1 19 19 H 1.08994 * 109.48945 * 303.15584 * 18 4 2 20 20 C 1.53002 * 109.49012 * 63.22236 * 18 4 2 21 21 H 1.08991 * 109.47395 * 299.99734 * 1 2 3 22 22 H 1.08996 * 109.47259 * 60.00495 * 1 2 3 23 23 H 1.09003 * 109.46441 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47505 * 240.00308 * 2 1 3 25 25 H 1.08996 * 109.46893 * 186.72331 * 3 2 1 26 26 H 1.08996 * 109.47096 * 306.72211 * 3 2 1 27 27 H 1.08999 * 109.47065 * 66.72138 * 3 2 1 28 28 H 1.09000 * 109.49033 * 56.84985 * 5 4 2 29 29 H 1.08999 * 109.49184 * 296.77547 * 5 4 2 30 30 H 0.97001 * 119.99828 * 180.02562 * 11 10 8 31 31 H 1.00894 * 110.99697 * 64.54881 * 16 6 5 32 32 H 1.09000 * 109.48239 * 179.28588 * 17 16 6 33 33 H 1.08996 * 109.48804 * 299.32839 * 17 16 6 34 34 H 1.09004 * 109.47134 * 175.12131 * 20 18 4 35 35 H 1.09005 * 109.46726 * 295.11491 * 20 18 4 36 36 H 1.08998 * 109.47504 * 55.11622 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4807 -0.5812 1.3121 6 6 3.9414 -1.2450 2.6119 7 1 3.4936 -0.7300 3.4619 8 6 5.4431 -1.1677 2.7116 9 1 6.0126 -0.6919 1.9270 10 6 6.0899 -1.7040 3.8049 11 7 5.3963 -2.2824 4.7609 12 14 7.9514 -1.6076 3.9288 13 1 8.3748 -0.1844 3.9240 14 1 8.3975 -2.2531 5.1896 15 1 8.5615 -2.3095 2.7711 16 7 3.5216 -2.6533 2.6153 17 6 2.0606 -2.7645 2.5025 18 6 1.5998 -2.1007 1.2027 19 1 0.5137 -2.1566 1.1310 20 6 2.2285 -2.8236 0.0098 21 1 -0.3634 0.5137 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1232 1.4449 -0.1203 26 1 1.5817 1.9899 -0.8237 27 1 1.7781 1.9205 0.9440 28 1 3.7657 0.4709 1.3203 29 1 3.9499 -1.0789 0.4635 30 1 5.8513 -2.6594 5.5301 31 1 3.9813 -3.1694 1.8803 32 1 1.7756 -3.8166 2.4945 33 1 1.5914 -2.2672 3.3514 34 1 1.9879 -3.8856 0.0605 35 1 1.8347 -2.4058 -0.9168 36 1 3.3105 -2.6945 0.0356 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218990076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:50 Heat of formation + Delta-G solvation = 6.986967 kcal Electronic energy + Delta-G solvation = -15332.505804 eV Core-core repulsion = 13044.495856 eV Total energy + Delta-G solvation = -2288.009948 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.25458 -35.05259 -32.84909 -30.86420 -30.27429 -27.14026 -27.02678 -24.55292 -23.71965 -21.18519 -20.01930 -18.09876 -16.63667 -15.78249 -14.90373 -14.54950 -14.07843 -13.52280 -13.43111 -13.28282 -12.70384 -12.41295 -12.01760 -11.98911 -11.71968 -11.54850 -11.12944 -10.94108 -10.85796 -10.71975 -10.65255 -10.41810 -10.09892 -9.82905 -9.58377 -8.86391 -8.35831 -7.67353 -6.68872 -5.82831 -3.97725 3.37272 3.42436 3.44297 4.38806 4.56380 5.19307 5.26781 5.30323 5.46320 5.61391 5.64169 5.75389 5.81393 5.87521 6.01445 6.04032 6.11124 6.18190 6.20946 6.27416 6.40388 6.46301 6.51119 6.54611 6.66976 6.90672 6.94443 7.49076 7.78192 7.84041 7.98225 8.30189 8.67343 9.02073 9.18635 9.70786 11.21450 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042294 B = 0.009354 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.875800 B = 2992.559147 C = 3339.582595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.070 3.930 3 C -0.145 4.145 4 N -0.524 5.524 5 C 0.024 3.976 6 C 0.228 3.772 7 H 0.044 0.956 8 C -0.540 4.540 9 H 0.051 0.949 10 C 0.084 3.916 11 N -0.845 5.845 12 Si 0.882 3.118 13 H -0.279 1.279 14 H -0.288 1.288 15 H -0.279 1.279 16 N -0.648 5.648 17 C 0.065 3.935 18 C 0.040 3.960 19 H 0.071 0.929 20 C -0.185 4.185 21 H 0.061 0.939 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.033 0.967 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.021 0.979 30 H 0.256 0.744 31 H 0.317 0.683 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.604 1.872 -8.419 11.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.038 4.038 3 C -0.202 4.202 4 N -0.248 5.248 5 C -0.105 4.105 6 C 0.120 3.880 7 H 0.062 0.938 8 C -0.580 4.580 9 H 0.070 0.930 10 C -0.123 4.123 11 N -0.480 5.480 12 Si 0.710 3.290 13 H -0.204 1.204 14 H -0.214 1.214 15 H -0.205 1.205 16 N -0.275 5.275 17 C -0.066 4.066 18 C -0.071 4.071 19 H 0.089 0.911 20 C -0.244 4.244 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.135 0.865 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.803 1.954 -7.097 10.728 hybrid contribution 1.234 -0.161 -1.704 2.110 sum -6.570 1.793 -8.801 11.128 Atomic orbital electron populations 1.21832 0.95193 1.01464 1.01379 1.21609 0.95043 0.94921 0.92246 1.21877 1.01056 0.95556 1.01726 1.62483 1.13681 1.12070 1.36608 1.23148 0.84745 1.01453 1.01109 1.19131 0.94571 0.84150 0.90129 0.93783 1.20885 0.90912 1.40036 1.06142 0.93037 1.24940 0.97233 0.94520 0.95569 1.70104 1.34530 1.35070 1.08281 0.86857 0.86808 0.78100 0.77215 1.20425 1.21372 1.20474 1.61043 1.01162 1.14728 1.50603 1.22076 0.92664 0.97776 0.94131 1.22544 0.99150 0.88262 0.97095 0.91086 1.22427 1.02411 1.00623 0.98965 0.92005 0.93118 0.92918 0.94883 0.92520 0.93073 0.91782 0.91413 0.96094 0.93416 0.86541 0.92624 0.91475 0.92613 0.93536 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.04 37.16 0.34 -1.52 16 2 C 0.07 1.09 2.42 -67.71 -0.16 0.92 16 3 C -0.14 -2.08 8.50 37.16 0.32 -1.77 16 4 N -0.52 -9.64 4.53 -218.57 -0.99 -10.62 16 5 C 0.02 0.52 4.00 -3.77 -0.02 0.50 16 6 C 0.23 5.73 2.45 -68.81 -0.17 5.56 16 7 H 0.04 1.26 8.14 -51.93 -0.42 0.84 16 8 C -0.54 -14.83 8.69 -34.44 -0.30 -15.12 16 9 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 10 C 0.08 2.35 5.39 -17.82 -0.10 2.26 16 11 N -0.85 -24.68 12.77 55.43 0.71 -23.97 16 12 Si 0.88 21.28 29.54 -169.99 -5.02 16.26 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 N -0.65 -15.35 5.80 -107.82 -0.63 -15.97 16 17 C 0.06 1.29 6.21 -3.77 -0.02 1.27 16 18 C 0.04 0.70 2.71 -67.66 -0.18 0.52 16 19 H 0.07 1.13 6.21 -51.93 -0.32 0.81 16 20 C -0.19 -2.98 8.08 37.16 0.30 -2.68 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.68 6.39 -51.93 -0.33 0.35 16 24 H 0.03 0.52 6.37 -51.93 -0.33 0.19 16 25 H 0.06 0.86 6.67 -51.93 -0.35 0.51 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 1.44 6.18 -51.93 -0.32 1.12 16 29 H 0.02 0.45 6.24 -51.93 -0.32 0.13 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.32 7.42 7.29 -39.29 -0.29 7.13 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.69 6.67 -51.93 -0.35 0.34 16 36 H 0.06 1.16 5.10 -51.93 -0.26 0.90 16 LS Contribution 269.77 15.07 4.07 4.07 Total: -1.00 -28.30 269.77 -7.66 -35.96 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.80 Total: 4.36 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 0.00 Total: -10.07 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.91 Total: -50.57 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.30 -7.66 -35.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218990076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.946 kcal (2) G-P(sol) polarization free energy of solvation -28.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds