Wall clock time and date at job start Mon Mar 30 2020 02:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46817 * 2 1 4 4 N 1.46897 * 109.47211 * 119.99964 * 2 1 3 5 5 C 1.46961 * 110.99751 * 186.39230 * 4 2 1 6 6 C 1.53048 * 109.36313 * 176.81233 * 5 4 2 7 7 H 1.09000 * 109.49233 * 298.43393 * 6 5 4 8 8 C 1.50698 * 109.50713 * 178.38132 * 6 5 4 9 9 H 1.07997 * 119.99926 * 0.05410 * 8 6 5 10 10 C 1.37880 * 119.99754 * 180.02562 * 8 6 5 11 11 N 1.31513 * 120.00257 * 359.97438 * 10 8 6 12 12 Si 1.86810 * 119.99752 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47310 * 59.99685 * 12 10 8 14 14 H 1.48497 * 109.46936 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.46839 * 299.99735 * 12 10 8 16 16 N 1.46959 * 109.36497 * 58.40097 * 6 5 4 17 17 C 1.46957 * 110.87752 * 300.67936 * 16 6 5 18 18 C 1.46949 * 110.99996 * 62.59390 * 4 2 1 19 19 H 1.08994 * 109.48945 * 303.15584 * 18 4 2 20 20 C 1.53002 * 109.49012 * 63.22236 * 18 4 2 21 21 H 1.08991 * 109.47395 * 299.99734 * 1 2 3 22 22 H 1.08996 * 109.47259 * 60.00495 * 1 2 3 23 23 H 1.09003 * 109.46441 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47505 * 240.00308 * 2 1 3 25 25 H 1.08996 * 109.46893 * 186.72331 * 3 2 1 26 26 H 1.08996 * 109.47096 * 306.72211 * 3 2 1 27 27 H 1.08999 * 109.47065 * 66.72138 * 3 2 1 28 28 H 1.09000 * 109.49033 * 56.84985 * 5 4 2 29 29 H 1.08999 * 109.49184 * 296.77547 * 5 4 2 30 30 H 0.97001 * 119.99828 * 180.02562 * 11 10 8 31 31 H 1.00894 * 110.99697 * 64.54881 * 16 6 5 32 32 H 1.09000 * 109.48239 * 179.28588 * 17 16 6 33 33 H 1.08996 * 109.48804 * 299.32839 * 17 16 6 34 34 H 1.09004 * 109.47134 * 175.12131 * 20 18 4 35 35 H 1.09005 * 109.46726 * 295.11491 * 20 18 4 36 36 H 1.08998 * 109.47504 * 55.11622 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4807 -0.5812 1.3121 6 6 3.9414 -1.2450 2.6119 7 1 3.4936 -0.7300 3.4619 8 6 5.4431 -1.1677 2.7116 9 1 6.0126 -0.6919 1.9270 10 6 6.0899 -1.7040 3.8049 11 7 5.3963 -2.2824 4.7609 12 14 7.9514 -1.6076 3.9288 13 1 8.3748 -0.1844 3.9240 14 1 8.3975 -2.2531 5.1896 15 1 8.5615 -2.3095 2.7711 16 7 3.5216 -2.6533 2.6153 17 6 2.0606 -2.7645 2.5025 18 6 1.5998 -2.1007 1.2027 19 1 0.5137 -2.1566 1.1310 20 6 2.2285 -2.8236 0.0098 21 1 -0.3634 0.5137 0.8899 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1232 1.4449 -0.1203 26 1 1.5817 1.9899 -0.8237 27 1 1.7781 1.9205 0.9440 28 1 3.7657 0.4709 1.3203 29 1 3.9499 -1.0789 0.4635 30 1 5.8513 -2.6594 5.5301 31 1 3.9813 -3.1694 1.8803 32 1 1.7756 -3.8166 2.4945 33 1 1.5914 -2.2672 3.3514 34 1 1.9879 -3.8856 0.0605 35 1 1.8347 -2.4058 -0.9168 36 1 3.3105 -2.6945 0.0356 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218990076.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:49 Heat of formation + Delta-G solvation = -13.128903 kcal Electronic energy + Delta-G solvation = -15333.378094 eV Core-core repulsion = 13044.495856 eV Total energy + Delta-G solvation = -2288.882238 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.77844 -36.61722 -34.70407 -32.66148 -31.75846 -28.77413 -28.18992 -26.38104 -25.35677 -22.87775 -21.48942 -19.67072 -18.54454 -17.34881 -16.50413 -16.26533 -15.61618 -15.20882 -15.09754 -14.79668 -14.10018 -13.93049 -13.50136 -13.34392 -13.17317 -12.97823 -12.78105 -12.52560 -12.41080 -12.30220 -12.12441 -12.04018 -11.61606 -11.45343 -11.40542 -10.82695 -10.50061 -9.14887 -8.47457 -7.95255 -6.17872 1.45115 1.45971 1.53425 2.47301 3.05191 3.25610 3.88696 4.01543 4.09708 4.22376 4.29477 4.42421 4.48048 4.52825 4.56105 4.74552 4.79984 4.85895 4.89477 4.97235 4.99386 5.08404 5.12829 5.18959 5.29698 5.32676 5.45098 5.58994 5.76684 6.17309 6.32739 6.41860 6.67575 7.14812 7.17199 7.54964 9.07806 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042294 B = 0.009354 C = 0.008382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.875800 B = 2992.559147 C = 3339.582595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.067 3.933 3 C -0.142 4.142 4 N -0.536 5.536 5 C 0.044 3.956 6 C 0.232 3.768 7 H -0.003 1.003 8 C -0.557 4.557 9 H 0.050 0.950 10 C 0.036 3.964 11 N -0.879 5.879 12 Si 0.949 3.051 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.272 1.272 16 N -0.667 5.667 17 C 0.065 3.935 18 C 0.045 3.955 19 H 0.095 0.905 20 C -0.176 4.176 21 H 0.054 0.946 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.036 0.964 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.018 0.982 30 H 0.255 0.745 31 H 0.318 0.682 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.251 1.841 -10.131 13.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.041 4.041 3 C -0.200 4.200 4 N -0.261 5.261 5 C -0.086 4.086 6 C 0.124 3.876 7 H 0.015 0.985 8 C -0.596 4.596 9 H 0.068 0.932 10 C -0.168 4.168 11 N -0.515 5.515 12 Si 0.775 3.225 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.198 1.198 16 N -0.295 5.295 17 C -0.066 4.066 18 C -0.065 4.065 19 H 0.113 0.887 20 C -0.235 4.235 21 H 0.074 0.926 22 H 0.094 0.906 23 H 0.076 0.924 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.136 0.864 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.463 1.930 -8.828 12.381 hybrid contribution 1.365 -0.135 -1.172 1.804 sum -7.097 1.795 -10.000 12.394 Atomic orbital electron populations 1.21789 0.92948 1.02091 1.02354 1.21765 0.96738 0.94876 0.90727 1.21862 1.00397 0.95362 1.02335 1.62436 1.11561 1.13172 1.38939 1.22713 0.86883 1.00313 0.98673 1.18833 0.93323 0.85096 0.90351 0.98489 1.21255 0.92428 1.39748 1.06169 0.93209 1.25687 1.01740 0.94187 0.95215 1.70247 1.36296 1.36159 1.08799 0.85795 0.81282 0.78210 0.77243 1.19881 1.21147 1.19770 1.60799 1.03592 1.13870 1.51231 1.22075 0.90285 0.99162 0.95031 1.22471 1.00442 0.87586 0.95999 0.88702 1.22321 1.00652 1.01619 0.98885 0.92647 0.90557 0.92448 0.94566 0.93893 0.90156 0.92875 0.92097 0.96376 0.93596 0.86442 0.90596 0.93608 0.90990 0.91800 0.94140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.04 71.98 0.65 -2.42 16 2 C 0.07 1.91 2.42 44.92 0.11 2.02 16 3 C -0.14 -3.85 8.50 71.98 0.61 -3.23 16 4 N -0.54 -19.26 4.53 -845.43 -3.83 -23.08 16 5 C 0.04 1.87 4.00 86.31 0.35 2.22 16 6 C 0.23 12.04 2.45 44.17 0.11 12.15 16 7 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 8 C -0.56 -31.22 8.69 25.60 0.22 -31.00 16 9 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 10 C 0.04 2.01 5.39 84.66 0.46 2.47 16 11 N -0.88 -52.53 12.77 21.45 0.27 -52.26 16 12 Si 0.95 44.15 29.54 68.60 2.03 46.18 16 13 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 14 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 15 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 16 N -0.67 -32.16 5.80 -495.02 -2.87 -35.03 16 17 C 0.07 2.57 6.21 86.31 0.54 3.11 16 18 C 0.05 1.49 2.71 44.92 0.12 1.62 16 19 H 0.10 2.73 6.21 -2.39 -0.01 2.72 16 20 C -0.18 -5.24 8.08 71.98 0.58 -4.66 16 21 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.06 1.26 6.39 -2.39 -0.02 1.24 16 24 H 0.04 1.04 6.37 -2.39 -0.02 1.02 16 25 H 0.04 1.26 6.67 -2.39 -0.02 1.24 16 26 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 2.64 6.18 -2.39 -0.01 2.62 16 29 H 0.02 0.78 6.24 -2.39 -0.01 0.77 16 30 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 31 H 0.32 15.05 7.29 -89.70 -0.65 14.39 16 32 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.06 1.68 6.67 -2.38 -0.02 1.67 16 36 H 0.04 1.40 5.10 -2.39 -0.01 1.39 16 Total: -1.00 -61.64 269.77 -0.25 -61.89 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.40 Total: 20.04 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 3.74 Total: -17.74 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -6.42 Total: -110.37 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -61.64 -0.25 -61.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218990076.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.765 kcal (2) G-P(sol) polarization free energy of solvation -61.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds