Wall clock time and date at job start Mon Mar 30 2020 02:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47076 * 2 1 4 4 N 1.46902 * 109.46876 * 119.99812 * 2 1 3 5 5 C 1.46954 * 111.00097 * 175.15547 * 4 2 1 6 6 C 1.53055 * 109.36546 * 183.18964 * 5 4 2 7 7 H 1.09002 * 109.50707 * 61.57326 * 6 5 4 8 8 C 1.52997 * 109.48920 * 181.62981 * 6 5 4 9 9 N 1.46951 * 109.36434 * 301.59981 * 6 5 4 10 10 C 1.46962 * 110.88294 * 59.31921 * 9 6 5 11 11 H 1.08993 * 109.48716 * 60.64532 * 10 9 6 12 12 C 1.50693 * 109.48975 * 180.69468 * 10 9 6 13 13 H 1.07999 * 120.00177 * 120.00166 * 12 10 9 14 14 C 1.37884 * 119.99936 * 299.99787 * 12 10 9 15 15 N 1.31515 * 119.99671 * 0.02562 * 14 12 10 16 16 Si 1.86793 * 120.00144 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47379 * 60.00111 * 16 14 12 18 18 H 1.48498 * 109.47256 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47339 * 299.99958 * 16 14 12 20 20 C 1.46959 * 110.99954 * 298.95883 * 4 2 1 21 21 H 1.08994 * 109.47700 * 300.00338 * 1 2 3 22 22 H 1.09004 * 109.46736 * 60.00540 * 1 2 3 23 23 H 1.08999 * 109.47121 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47324 * 239.99373 * 2 1 3 25 25 H 1.09002 * 109.47276 * 59.99955 * 3 2 1 26 26 H 1.09002 * 109.46954 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47383 * 299.99351 * 3 2 1 28 28 H 1.08993 * 109.48818 * 63.22381 * 5 4 2 29 29 H 1.08997 * 109.48731 * 303.15301 * 5 4 2 30 30 H 1.09002 * 109.47153 * 179.88991 * 8 6 5 31 31 H 1.09001 * 109.46832 * 59.89182 * 8 6 5 32 32 H 1.09004 * 109.47261 * 299.89163 * 8 6 5 33 33 H 1.00904 * 111.00027 * 295.45206 * 9 6 5 34 34 H 0.96999 * 119.99632 * 180.02562 * 15 14 12 35 35 H 1.08992 * 109.48952 * 56.84288 * 20 4 2 36 36 H 1.09001 * 109.48327 * 296.77559 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4840 -0.8133 1.1770 6 6 3.9466 -1.6079 2.4006 7 1 3.5213 -2.6110 2.3652 8 6 5.4737 -1.7006 2.4016 9 7 3.4959 -0.9273 3.6225 10 6 2.0314 -0.8064 3.6450 11 1 1.5842 -1.8002 3.6235 12 6 1.6053 -0.0903 4.9006 13 1 1.0576 0.8381 4.8333 14 6 1.9145 -0.6203 6.1353 15 7 2.5818 -1.7506 6.2172 16 14 1.3857 0.2670 7.6917 17 1 -0.0942 0.3883 7.7138 18 1 1.8364 -0.5036 8.8783 19 1 1.9939 1.6215 7.7202 20 6 1.5689 -0.0118 2.4214 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.6767 1.9564 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 3.9312 0.1805 1.1985 29 1 3.7922 -1.3316 0.2691 30 1 5.8029 -2.2649 3.2741 31 1 5.8986 -0.6974 2.4362 32 1 5.8077 -2.2056 1.4951 33 1 3.9347 -0.0235 3.7158 34 1 2.7990 -2.1237 7.0858 35 1 0.4809 0.0542 2.4207 36 1 1.9944 0.9911 2.4570 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218990246.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:17 Heat of formation + Delta-G solvation = 1.867936 kcal Electronic energy + Delta-G solvation = -15209.817611 eV Core-core repulsion = 12921.585685 eV Total energy + Delta-G solvation = -2288.231926 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.95728 -35.32691 -32.96111 -30.88353 -30.09440 -27.13924 -26.49564 -25.08175 -23.65802 -20.89530 -19.85376 -18.79543 -16.36509 -15.38863 -14.62458 -14.29573 -14.25128 -14.21021 -13.42282 -13.10756 -12.86179 -12.43937 -11.96067 -11.91113 -11.63903 -11.41611 -11.17601 -10.89198 -10.84133 -10.67119 -10.59011 -10.41238 -10.15708 -9.91547 -9.58100 -8.87518 -8.35752 -7.70400 -6.70165 -5.82748 -3.97537 3.37304 3.42422 3.44354 4.40688 4.57231 5.15299 5.26500 5.35009 5.52931 5.60628 5.69187 5.78152 5.84969 5.92711 5.99384 6.06095 6.11352 6.17978 6.22584 6.29880 6.41970 6.44079 6.55982 6.57335 6.77173 6.95148 6.97668 7.47398 7.75270 7.82293 7.97664 8.29825 8.67627 9.01699 9.18587 9.70746 11.21403 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030360 B = 0.010473 C = 0.008452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.034953 B = 2672.980510 C = 3311.937158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.074 3.926 3 C -0.185 4.185 4 N -0.531 5.531 5 C 0.025 3.975 6 C 0.082 3.918 7 H 0.075 0.925 8 C -0.137 4.137 9 N -0.642 5.642 10 C 0.227 3.773 11 H 0.044 0.956 12 C -0.540 4.540 13 H 0.051 0.949 14 C 0.085 3.915 15 N -0.845 5.845 16 Si 0.882 3.118 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.279 1.279 20 C 0.026 3.974 21 H 0.059 0.941 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.024 0.976 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.316 0.684 34 H 0.256 0.744 35 H 0.067 0.933 36 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.930 2.828 -10.272 10.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.035 4.035 3 C -0.244 4.244 4 N -0.254 5.254 5 C -0.105 4.105 6 C -0.030 4.030 7 H 0.093 0.907 8 C -0.195 4.195 9 N -0.270 5.270 10 C 0.120 3.880 11 H 0.062 0.938 12 C -0.579 4.579 13 H 0.070 0.930 14 C -0.122 4.122 15 N -0.479 5.479 16 Si 0.710 3.290 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.205 1.205 20 C -0.103 4.103 21 H 0.078 0.922 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.133 0.867 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.823 1.602 -9.744 9.909 hybrid contribution -0.030 2.114 0.104 2.117 sum 0.793 3.716 -9.639 10.361 Atomic orbital electron populations 1.21837 0.94736 1.02218 1.01229 1.21677 0.95627 0.92050 0.94137 1.22462 1.01176 0.98838 1.01912 1.62424 1.10157 1.50781 1.02083 1.22939 0.88211 0.98832 1.00536 1.21622 0.93893 0.98921 0.88561 0.90672 1.21728 0.95849 1.00923 1.00978 1.61143 1.09265 1.24404 1.32234 1.19137 0.84046 0.95575 0.89281 0.93780 1.20868 1.37889 1.08784 0.90358 0.93032 1.24935 0.94259 0.94581 0.98466 1.70107 1.36330 1.17812 1.23635 0.86857 0.78913 0.79861 0.83345 1.20431 1.21393 1.20471 1.23148 1.00156 0.96036 0.91007 0.92234 0.93089 0.92037 0.91118 0.92116 0.92941 0.92890 0.95781 0.92328 0.91800 0.93768 0.93653 0.86750 0.93435 0.91446 0.96065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.99 37.16 0.33 -1.70 16 2 C 0.07 1.14 2.96 -67.71 -0.20 0.94 16 3 C -0.19 -2.66 8.49 37.16 0.32 -2.34 16 4 N -0.53 -9.90 4.70 -226.49 -1.06 -10.97 16 5 C 0.03 0.45 4.52 -3.77 -0.02 0.43 16 6 C 0.08 1.61 3.20 -67.66 -0.22 1.40 16 7 H 0.08 1.63 8.14 -51.93 -0.42 1.20 16 8 C -0.14 -2.28 9.45 37.16 0.35 -1.93 16 9 N -0.64 -15.18 5.52 -100.82 -0.56 -15.74 16 10 C 0.23 5.72 2.45 -68.81 -0.17 5.55 16 11 H 0.04 1.26 8.14 -51.93 -0.42 0.84 16 12 C -0.54 -14.79 8.69 -34.44 -0.30 -15.09 16 13 H 0.05 1.39 7.74 -52.49 -0.41 0.99 16 14 C 0.08 2.36 5.39 -17.82 -0.10 2.26 16 15 N -0.84 -24.55 12.77 55.43 0.71 -23.84 16 16 Si 0.88 21.25 29.54 -169.99 -5.02 16.23 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C 0.03 0.54 4.03 -3.76 -0.02 0.53 16 21 H 0.06 0.91 6.36 -51.93 -0.33 0.58 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 25 H 0.06 0.95 6.46 -51.93 -0.34 0.62 16 26 H 0.05 0.76 6.59 -51.93 -0.34 0.42 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.02 0.43 6.59 -51.93 -0.34 0.09 16 29 H 0.06 0.95 8.12 -51.93 -0.42 0.52 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.32 7.45 8.70 -39.29 -0.34 7.11 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.07 1.43 6.17 -51.93 -0.32 1.11 16 36 H 0.02 0.46 6.47 -51.93 -0.34 0.12 16 LS Contribution 276.79 15.07 4.17 4.17 Total: -1.00 -28.17 276.79 -7.89 -36.06 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.11 Total: 4.04 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -0.01 Total: -9.95 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: -0.91 Total: -50.55 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.17 -7.89 -36.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218990246.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.924 kcal (2) G-P(sol) polarization free energy of solvation -28.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds