Wall clock time and date at job start Mon Mar 30 2020 02:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47076 * 2 1 4 4 N 1.46902 * 109.46876 * 119.99812 * 2 1 3 5 5 C 1.46954 * 111.00097 * 175.15547 * 4 2 1 6 6 C 1.53055 * 109.36546 * 183.18964 * 5 4 2 7 7 H 1.09002 * 109.50707 * 61.57326 * 6 5 4 8 8 C 1.52997 * 109.48920 * 181.62981 * 6 5 4 9 9 N 1.46951 * 109.36434 * 301.59981 * 6 5 4 10 10 C 1.46962 * 110.88294 * 59.31921 * 9 6 5 11 11 H 1.08993 * 109.48716 * 60.64532 * 10 9 6 12 12 C 1.50693 * 109.48975 * 180.69468 * 10 9 6 13 13 H 1.07999 * 120.00177 * 120.00166 * 12 10 9 14 14 C 1.37884 * 119.99936 * 299.99787 * 12 10 9 15 15 N 1.31515 * 119.99671 * 0.02562 * 14 12 10 16 16 Si 1.86793 * 120.00144 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47379 * 60.00111 * 16 14 12 18 18 H 1.48498 * 109.47256 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47339 * 299.99958 * 16 14 12 20 20 C 1.46959 * 110.99954 * 298.95883 * 4 2 1 21 21 H 1.08994 * 109.47700 * 300.00338 * 1 2 3 22 22 H 1.09004 * 109.46736 * 60.00540 * 1 2 3 23 23 H 1.08999 * 109.47121 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47324 * 239.99373 * 2 1 3 25 25 H 1.09002 * 109.47276 * 59.99955 * 3 2 1 26 26 H 1.09002 * 109.46954 * 179.97438 * 3 2 1 27 27 H 1.08993 * 109.47383 * 299.99351 * 3 2 1 28 28 H 1.08993 * 109.48818 * 63.22381 * 5 4 2 29 29 H 1.08997 * 109.48731 * 303.15301 * 5 4 2 30 30 H 1.09002 * 109.47153 * 179.88991 * 8 6 5 31 31 H 1.09001 * 109.46832 * 59.89182 * 8 6 5 32 32 H 1.09004 * 109.47261 * 299.89163 * 8 6 5 33 33 H 1.00904 * 111.00027 * 295.45206 * 9 6 5 34 34 H 0.96999 * 119.99632 * 180.02562 * 15 14 12 35 35 H 1.08992 * 109.48952 * 56.84288 * 20 4 2 36 36 H 1.09001 * 109.48327 * 296.77559 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.4840 -0.8133 1.1770 6 6 3.9466 -1.6079 2.4006 7 1 3.5213 -2.6110 2.3652 8 6 5.4737 -1.7006 2.4016 9 7 3.4959 -0.9273 3.6225 10 6 2.0314 -0.8064 3.6450 11 1 1.5842 -1.8002 3.6235 12 6 1.6053 -0.0903 4.9006 13 1 1.0576 0.8381 4.8333 14 6 1.9145 -0.6203 6.1353 15 7 2.5818 -1.7506 6.2172 16 14 1.3857 0.2670 7.6917 17 1 -0.0942 0.3883 7.7138 18 1 1.8364 -0.5036 8.8783 19 1 1.9939 1.6215 7.7202 20 6 1.5689 -0.0118 2.4214 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.6767 1.9564 0.8900 26 1 3.1300 1.4425 0.0005 27 1 1.6768 1.9563 -0.8900 28 1 3.9312 0.1805 1.1985 29 1 3.7922 -1.3316 0.2691 30 1 5.8029 -2.2649 3.2741 31 1 5.8986 -0.6974 2.4362 32 1 5.8077 -2.2056 1.4951 33 1 3.9347 -0.0235 3.7158 34 1 2.7990 -2.1237 7.0858 35 1 0.4809 0.0542 2.4207 36 1 1.9944 0.9911 2.4570 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218990246.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:17 Heat of formation + Delta-G solvation = -18.091214 kcal Electronic energy + Delta-G solvation = -15210.683105 eV Core-core repulsion = 12921.585685 eV Total energy + Delta-G solvation = -2289.097420 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.50385 -36.85564 -34.89855 -32.64231 -31.61684 -28.43052 -28.06258 -26.93478 -25.17804 -22.69704 -21.39173 -20.31959 -18.38597 -16.95512 -16.30036 -15.98644 -15.80319 -15.73952 -14.95333 -14.76617 -14.27857 -13.92935 -13.64681 -13.23649 -13.05315 -12.84054 -12.75446 -12.65658 -12.50887 -12.28990 -11.96341 -11.93736 -11.76430 -11.50182 -11.45648 -10.86570 -10.49698 -9.19055 -8.48990 -7.94805 -6.17350 1.45213 1.46052 1.53406 2.47487 3.06285 3.25099 3.87678 3.94418 4.14699 4.21923 4.32532 4.38874 4.49898 4.53505 4.62432 4.73775 4.77107 4.81395 4.84832 4.95846 4.97520 5.02477 5.14863 5.29380 5.32928 5.39357 5.43548 5.57820 5.76527 6.15130 6.29985 6.37059 6.68278 7.15584 7.16610 7.55201 9.08070 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030360 B = 0.010473 C = 0.008452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.034953 B = 2672.980510 C = 3311.937158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.070 3.930 3 C -0.178 4.178 4 N -0.545 5.545 5 C 0.034 3.966 6 C 0.079 3.921 7 H 0.049 0.951 8 C -0.126 4.126 9 N -0.660 5.660 10 C 0.230 3.770 11 H -0.003 1.003 12 C -0.556 4.556 13 H 0.050 0.950 14 C 0.036 3.964 15 N -0.878 5.878 16 Si 0.949 3.051 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.272 1.272 20 C 0.046 3.954 21 H 0.042 0.958 22 H 0.080 0.920 23 H 0.054 0.946 24 H 0.090 0.910 25 H 0.041 0.959 26 H 0.051 0.949 27 H 0.079 0.921 28 H 0.030 0.970 29 H 0.085 0.915 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.315 0.685 34 H 0.255 0.745 35 H 0.061 0.939 36 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.259 3.926 -11.734 12.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.038 4.038 3 C -0.237 4.237 4 N -0.269 5.269 5 C -0.096 4.096 6 C -0.032 4.032 7 H 0.067 0.933 8 C -0.184 4.184 9 N -0.289 5.289 10 C 0.122 3.878 11 H 0.015 0.985 12 C -0.595 4.595 13 H 0.068 0.932 14 C -0.168 4.168 15 N -0.513 5.513 16 Si 0.775 3.225 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.083 4.083 21 H 0.061 0.939 22 H 0.099 0.901 23 H 0.073 0.927 24 H 0.108 0.892 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.048 0.952 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 1.148 2.708 -11.226 11.605 hybrid contribution -0.148 1.728 0.487 1.801 sum 1.000 4.436 -10.739 11.662 Atomic orbital electron populations 1.21822 0.94026 1.01992 1.01872 1.21840 0.96277 0.92709 0.92939 1.22382 1.01051 0.97930 1.02291 1.62371 1.10893 1.51363 1.02260 1.22826 0.87664 0.98877 1.00261 1.21659 0.95928 0.97395 0.88252 0.93258 1.21630 0.93231 1.01693 1.01841 1.60901 1.08330 1.24468 1.35195 1.18857 0.85081 0.93305 0.90583 0.98494 1.21230 1.37805 1.08768 0.91729 0.93210 1.25676 0.94286 0.95258 1.01546 1.70251 1.37650 1.19268 1.24169 0.85799 0.78606 0.78760 0.79383 1.19884 1.21198 1.19771 1.22702 0.99564 0.95131 0.90935 0.93881 0.90120 0.92727 0.89200 0.93967 0.92987 0.90236 0.95231 0.89709 0.93404 0.92756 0.90497 0.86875 0.93634 0.92093 0.96358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 8.99 71.98 0.65 -3.05 16 2 C 0.07 1.99 2.96 44.92 0.13 2.13 16 3 C -0.18 -4.61 8.49 71.98 0.61 -4.00 16 4 N -0.54 -19.79 4.70 -870.48 -4.09 -23.88 16 5 C 0.03 1.13 4.52 86.31 0.39 1.52 16 6 C 0.08 3.10 3.20 44.92 0.14 3.24 16 7 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 8 C -0.13 -4.02 9.45 71.98 0.68 -3.34 16 9 N -0.66 -31.87 5.52 -472.89 -2.61 -34.48 16 10 C 0.23 11.95 2.45 44.17 0.11 12.06 16 11 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 12 C -0.56 -31.18 8.69 25.60 0.22 -30.95 16 13 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 14 C 0.04 2.05 5.39 84.66 0.46 2.51 16 15 N -0.88 -52.35 12.77 21.45 0.27 -52.07 16 16 Si 0.95 44.15 29.54 68.60 2.03 46.17 16 17 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 20 C 0.05 1.98 4.03 86.31 0.35 2.33 16 21 H 0.04 1.27 6.36 -2.39 -0.02 1.26 16 22 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.05 1.50 8.14 -2.39 -0.02 1.49 16 24 H 0.09 2.26 8.12 -2.39 -0.02 2.24 16 25 H 0.04 1.25 6.46 -2.39 -0.02 1.23 16 26 H 0.05 1.35 6.59 -2.39 -0.02 1.33 16 27 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.03 0.98 6.59 -2.39 -0.02 0.97 16 29 H 0.08 2.45 8.12 -2.39 -0.02 2.43 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.31 15.03 8.70 -89.69 -0.78 14.25 16 34 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 35 H 0.06 2.64 6.17 -2.39 -0.01 2.63 16 36 H 0.02 0.79 6.47 -2.39 -0.02 0.77 16 Total: -1.00 -61.70 276.79 -0.40 -62.10 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.26 Total: 19.73 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 3.74 Total: -17.56 kcal Atomic # 7 Polarization: -104.01 SS G_CDS: -6.43 Total: -110.44 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -61.70 -0.40 -62.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218990246.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.005 kcal (2) G-P(sol) polarization free energy of solvation -61.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds