Wall clock time and date at job start Mon Mar 30 2020 02:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46906 * 109.47302 * 240.00524 * 2 1 3 5 5 C 1.46952 * 110.99986 * 180.02562 * 4 2 1 6 6 C 1.53052 * 109.36035 * 183.18856 * 5 4 2 7 7 H 1.09006 * 109.49078 * 181.62588 * 6 5 4 8 8 C 1.53005 * 109.49317 * 61.56333 * 6 5 4 9 9 N 1.46955 * 109.36686 * 301.59018 * 6 5 4 10 10 C 1.46961 * 110.87542 * 59.32334 * 9 6 5 11 11 H 1.09003 * 109.49121 * 60.66982 * 10 9 6 12 12 C 1.50705 * 109.49116 * 180.71483 * 10 9 6 13 13 H 1.07998 * 120.00332 * 120.00065 * 12 10 9 14 14 C 1.37877 * 119.99696 * 300.00423 * 12 10 9 15 15 N 1.31519 * 120.00061 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00001 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.46937 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46993 * 119.99262 * 16 14 12 19 19 H 1.48497 * 109.47162 * 239.99837 * 16 14 12 20 20 C 1.46961 * 110.99563 * 303.79829 * 4 2 1 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.09000 * 109.48582 * 303.14811 * 5 4 2 29 29 H 1.08995 * 109.49254 * 63.19695 * 5 4 2 30 30 H 1.08997 * 109.47013 * 60.00037 * 8 6 5 31 31 H 1.08999 * 109.46855 * 180.02562 * 8 6 5 32 32 H 1.08996 * 109.46511 * 299.99938 * 8 6 5 33 33 H 1.00891 * 111.00876 * 183.18868 * 9 6 5 34 34 H 0.97002 * 120.00008 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.48763 * 296.77640 * 20 4 2 36 36 H 1.08998 * 109.48866 * 56.84573 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 3.4887 -0.7125 -1.2331 6 6 3.9575 -1.3702 -2.5332 7 1 5.0467 -1.4123 -2.5473 8 6 3.4625 -0.5512 -3.7271 9 7 3.4132 -2.7328 -2.6139 10 6 1.9441 -2.7128 -2.5801 11 1 1.5685 -2.1449 -3.4314 12 6 1.4203 -4.1243 -2.6468 13 1 0.8122 -4.5131 -1.8435 14 6 1.7175 -4.9192 -3.7334 15 7 2.4577 -4.4456 -4.7119 16 14 1.0688 -6.6691 -3.8158 17 1 0.2673 -6.9575 -2.5995 18 1 0.2134 -6.8237 -5.0198 19 1 2.2095 -7.6167 -3.8939 20 6 1.4757 -2.0552 -1.2798 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 3.8675 0.3084 -1.1849 29 1 3.8642 -1.2803 -0.3819 30 1 3.8650 0.4599 -3.6659 31 1 3.7962 -1.0202 -4.6527 32 1 2.3734 -0.5103 -3.7129 33 1 3.7494 -3.2084 -3.4377 34 1 2.6665 -5.0047 -5.4765 35 1 1.8287 -2.6384 -0.4293 36 1 0.3866 -2.0135 -1.2656 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218990314.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:19 Heat of formation + Delta-G solvation = -18.196868 kcal Electronic energy + Delta-G solvation = -15291.500961 eV Core-core repulsion = 13002.398960 eV Total energy + Delta-G solvation = -2289.102001 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.37854 -36.92030 -34.82988 -32.53673 -31.73526 -28.71146 -28.11092 -26.65465 -25.29967 -22.86989 -21.20106 -19.57530 -18.64915 -17.37190 -16.56864 -15.77813 -15.50899 -15.46622 -15.24952 -15.07955 -14.21015 -13.95567 -13.38845 -13.19307 -12.98528 -12.88680 -12.81381 -12.66527 -12.44464 -12.34454 -12.21095 -11.79931 -11.63560 -11.50896 -11.04529 -10.93864 -10.61418 -9.14528 -8.69002 -8.15616 -6.25944 1.41157 1.43263 1.54597 2.42653 3.09227 3.11286 3.96039 4.06764 4.09771 4.19887 4.42170 4.48509 4.49636 4.61198 4.69974 4.79885 4.84081 4.87717 4.97257 4.98929 5.01902 5.06162 5.17730 5.26684 5.32438 5.40681 5.50188 5.60866 5.83903 6.08356 6.33762 6.39977 6.66832 7.02967 7.17017 7.45326 8.93368 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039428 B = 0.009720 C = 0.008309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.986113 B = 2880.028714 C = 3369.161649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.067 3.933 3 C -0.135 4.135 4 N -0.537 5.537 5 C 0.072 3.928 6 C 0.070 3.930 7 H 0.076 0.924 8 C -0.153 4.153 9 N -0.692 5.692 10 C 0.221 3.779 11 H -0.025 1.025 12 C -0.531 4.531 13 H 0.052 0.948 14 C 0.022 3.978 15 N -0.920 5.920 16 Si 0.962 3.038 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.081 3.919 21 H 0.080 0.920 22 H 0.043 0.957 23 H 0.056 0.944 24 H 0.029 0.971 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.096 0.904 29 H 0.021 0.979 30 H 0.067 0.933 31 H 0.028 0.972 32 H 0.044 0.956 33 H 0.347 0.653 34 H 0.264 0.736 35 H 0.009 0.991 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 9.345 7.054 11.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.041 4.041 3 C -0.192 4.192 4 N -0.263 5.263 5 C -0.056 4.056 6 C -0.041 4.041 7 H 0.095 0.905 8 C -0.212 4.212 9 N -0.326 5.326 10 C 0.112 3.888 11 H -0.007 1.007 12 C -0.570 4.570 13 H 0.070 0.930 14 C -0.177 4.177 15 N -0.560 5.560 16 Si 0.788 3.212 17 H -0.195 1.195 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.047 4.047 21 H 0.099 0.901 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.114 0.886 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.169 0.831 34 H 0.074 0.926 35 H 0.027 0.973 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.168 9.443 7.169 11.857 hybrid contribution -0.162 -1.340 -0.629 1.489 sum 0.006 8.104 6.540 10.414 Atomic orbital electron populations 1.21860 0.93969 1.01521 1.02543 1.21762 0.96270 0.95903 0.90127 1.21810 1.01046 0.93764 1.02591 1.62276 1.08083 1.16822 1.39107 1.22119 0.87694 1.00053 0.95755 1.21748 0.98255 0.89687 0.94361 0.90549 1.22153 1.01484 1.00020 0.97574 1.61120 1.10308 1.14138 1.47057 1.18903 0.85460 0.93344 0.91058 1.00707 1.21499 1.31518 0.99157 1.04857 0.92961 1.25711 0.94954 1.02216 0.94846 1.69807 1.38987 1.37856 1.09390 0.85457 0.78031 0.79875 0.77879 1.19453 1.20600 1.20607 1.22065 0.98369 0.87156 0.97141 0.90140 0.93838 0.92449 0.95344 0.90447 0.92387 0.92291 0.88582 0.96079 0.91378 0.95306 0.93707 0.83139 0.92646 0.97263 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 8.84 71.98 0.64 -3.17 16 2 C 0.07 1.97 2.67 44.91 0.12 2.09 16 3 C -0.13 -3.06 8.97 71.98 0.65 -2.41 16 4 N -0.54 -19.83 3.90 -870.47 -3.39 -23.22 16 5 C 0.07 2.54 4.74 86.31 0.41 2.95 16 6 C 0.07 2.83 3.70 44.92 0.17 2.99 16 7 H 0.08 2.81 8.14 -2.38 -0.02 2.79 16 8 C -0.15 -6.01 8.83 71.98 0.64 -5.37 16 9 N -0.69 -34.43 6.32 -472.84 -2.99 -37.42 16 10 C 0.22 11.55 2.17 44.18 0.10 11.64 16 11 H -0.02 -1.43 6.34 -2.39 -0.02 -1.45 16 12 C -0.53 -30.07 8.77 25.60 0.22 -29.84 16 13 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 14 C 0.02 1.22 5.35 84.65 0.45 1.68 16 15 N -0.92 -52.64 11.49 21.45 0.25 -52.40 16 16 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 20 C 0.08 3.60 4.45 86.31 0.38 3.99 16 21 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.04 1.30 6.28 -2.39 -0.01 1.28 16 23 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 24 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.27 6.33 -2.39 -0.02 1.25 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.10 2.79 6.14 -2.39 -0.01 2.78 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.04 1.97 5.94 -2.39 -0.01 1.96 16 33 H 0.35 18.88 6.70 -89.70 -0.60 18.28 16 34 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 35 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.07 2.87 6.06 -2.39 -0.01 2.86 16 Total: -1.00 -60.09 272.33 0.10 -59.99 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.44 Total: 22.31 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 3.77 Total: -15.46 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -6.14 Total: -113.04 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -60.09 0.10 -59.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218990314.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.792 kcal (2) G-P(sol) polarization free energy of solvation -60.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds