Wall clock time and date at job start Mon Mar 30 2020 02:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47201 * 2 1 4 4 N 1.46905 * 109.46841 * 120.00303 * 2 1 3 5 5 C 1.46956 * 110.99774 * 320.98804 * 4 2 1 6 6 H 1.08998 * 109.48993 * 63.22686 * 5 4 2 7 7 C 1.53001 * 109.51020 * 303.16803 * 5 4 2 8 8 C 1.53050 * 109.36391 * 183.19112 * 5 4 2 9 9 N 1.46956 * 109.36413 * 301.60192 * 8 5 4 10 10 C 1.46956 * 110.88341 * 59.31959 * 9 8 5 11 11 C 1.46957 * 111.00334 * 84.78762 * 4 2 1 12 12 H 1.08997 * 109.48801 * 296.80535 * 11 4 2 13 13 C 1.50704 * 109.48709 * 56.84156 * 11 4 2 14 14 H 1.08005 * 119.99674 * 5.22010 * 13 11 4 15 15 C 1.37874 * 120.00033 * 185.21702 * 13 11 4 16 16 N 1.31508 * 119.99990 * 6.90562 * 15 13 11 17 17 Si 1.86800 * 120.00127 * 186.90845 * 15 13 11 18 18 H 1.48500 * 109.47160 * 94.97869 * 17 15 13 19 19 H 1.48500 * 109.47226 * 214.98188 * 17 15 13 20 20 H 1.48501 * 109.46846 * 334.98464 * 17 15 13 21 21 H 1.09003 * 109.47196 * 306.61193 * 1 2 3 22 22 H 1.09003 * 109.47225 * 66.61432 * 1 2 3 23 23 H 1.08999 * 109.47866 * 186.61384 * 1 2 3 24 24 H 1.09000 * 109.46614 * 239.99418 * 2 1 3 25 25 H 1.08994 * 109.46881 * 287.21469 * 3 2 1 26 26 H 1.09000 * 109.47284 * 47.21932 * 3 2 1 27 27 H 1.09004 * 109.46827 * 167.21737 * 3 2 1 28 28 H 1.09001 * 109.46963 * 319.66793 * 7 5 4 29 29 H 1.09002 * 109.47097 * 79.66012 * 7 5 4 30 30 H 1.08996 * 109.47169 * 199.66710 * 7 5 4 31 31 H 1.08998 * 109.49502 * 181.63306 * 8 5 4 32 32 H 1.09004 * 109.50856 * 61.57505 * 8 5 4 33 33 H 1.00904 * 111.00194 * 183.18876 * 9 8 5 34 34 H 1.08998 * 109.48993 * 60.64480 * 10 9 8 35 35 H 1.08999 * 109.48725 * 180.71424 * 10 9 8 36 36 H 0.97001 * 120.00301 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6926 1.1995 5 6 1.1900 -0.3706 2.3690 6 1 0.1748 -0.7318 2.2052 7 6 1.1654 1.1451 2.5763 8 6 1.7783 -1.0462 3.6099 9 7 1.8364 -2.4984 3.3927 10 6 2.6660 -2.8204 2.2232 11 6 2.0777 -2.1449 0.9823 12 1 1.0725 -2.5261 0.8023 13 6 2.9486 -2.4403 -0.2116 14 1 3.4802 -1.6391 -0.7036 15 6 3.0668 -3.7332 -0.6756 16 7 2.3176 -4.6860 -0.1654 17 14 4.2912 -4.1315 -2.0290 18 1 5.5603 -4.6089 -1.4236 19 1 3.7319 -5.1911 -2.9064 20 1 4.5547 -2.9110 -2.8329 21 1 -0.3634 0.6129 0.8249 22 1 -0.3634 0.4079 -0.9433 23 1 -0.3635 -1.0208 0.1184 24 1 1.8932 -0.5139 -0.8900 25 1 1.8744 1.8863 -0.9816 26 1 1.5031 2.0177 0.7543 27 1 3.1060 1.4509 0.2274 28 1 2.1596 1.5529 2.3938 29 1 0.4552 1.5952 1.8826 30 1 0.8639 1.3669 3.6000 31 1 1.1484 -0.8326 4.4734 32 1 2.7835 -0.6650 3.7899 33 1 2.1727 -2.9742 4.2166 34 1 3.6813 -2.4592 2.3870 35 1 2.6831 -3.9002 2.0757 36 1 2.4010 -5.5957 -0.4916 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218992282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:56 Heat of formation + Delta-G solvation = 16.683268 kcal Electronic energy + Delta-G solvation = -15593.674272 eV Core-core repulsion = 13306.084787 eV Total energy + Delta-G solvation = -2287.589485 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.99156 -34.91807 -33.31602 -31.04662 -30.18694 -27.03249 -26.40170 -25.19527 -23.09545 -20.98389 -19.89622 -18.18228 -16.23506 -15.62476 -14.94029 -14.74503 -14.06918 -13.74776 -13.20054 -12.92801 -12.82420 -12.26572 -12.03060 -11.80442 -11.44688 -11.19744 -11.03200 -10.82823 -10.76375 -10.59305 -10.45063 -10.14546 -9.96083 -9.53995 -9.39572 -8.84250 -8.46829 -7.60201 -7.03938 -6.03269 -4.05650 3.30317 3.37651 3.40994 4.40644 4.95804 5.06258 5.31688 5.50676 5.64745 5.82228 5.88494 5.91691 6.05642 6.08192 6.16653 6.18848 6.29722 6.39864 6.47967 6.52987 6.66871 6.73237 6.83445 6.86785 6.99093 7.07918 7.43066 7.67448 7.79855 7.90402 8.14643 8.23496 8.39327 8.68819 9.04125 9.58680 11.04896 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031345 B = 0.012390 C = 0.009962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.074015 B = 2259.291365 C = 2810.087188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.078 3.922 3 C -0.153 4.153 4 N -0.526 5.526 5 C 0.080 3.920 6 H 0.042 0.958 7 C -0.151 4.151 8 C 0.069 3.931 9 N -0.698 5.698 10 C 0.072 3.928 11 C 0.221 3.779 12 H 0.014 0.986 13 C -0.508 4.508 14 H 0.064 0.936 15 C 0.062 3.938 16 N -0.887 5.887 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.274 1.274 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.055 0.945 24 H 0.096 0.904 25 H 0.040 0.960 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.026 0.974 33 H 0.324 0.676 34 H 0.013 0.987 35 H 0.089 0.911 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.687 8.152 3.928 9.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.030 4.030 3 C -0.211 4.211 4 N -0.251 5.251 5 C -0.030 4.030 6 H 0.059 0.941 7 C -0.208 4.208 8 C -0.061 4.061 9 N -0.327 5.327 10 C -0.056 4.056 11 C 0.114 3.886 12 H 0.032 0.968 13 C -0.547 4.547 14 H 0.082 0.918 15 C -0.140 4.140 16 N -0.526 5.526 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.198 1.198 21 H 0.072 0.928 22 H 0.064 0.936 23 H 0.074 0.926 24 H 0.114 0.886 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.140 0.860 34 H 0.032 0.968 35 H 0.107 0.893 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.830 8.082 3.648 9.054 hybrid contribution 0.743 -0.544 -0.495 1.045 sum -1.087 7.538 3.153 8.242 Atomic orbital electron populations 1.22516 0.98899 1.01730 1.00633 1.21590 0.91544 0.94239 0.95666 1.22319 1.01778 0.96679 1.00288 1.62470 1.49043 1.11826 1.01787 1.21547 0.95812 0.93737 0.91876 0.94051 1.22324 1.02218 0.96219 1.00049 1.21929 0.98505 0.89153 0.96529 1.60689 1.57489 1.07008 1.07562 1.22206 0.92434 1.02098 0.88903 1.19216 0.96178 0.80837 0.92333 0.96806 1.21111 1.27946 0.93207 1.12403 0.91785 1.24960 0.95766 0.96487 0.96799 1.69976 1.38158 1.01326 1.43100 0.86570 0.81496 0.78102 0.81788 1.20746 1.21358 1.19841 0.92803 0.93562 0.92629 0.88618 0.94103 0.92068 0.92433 0.91508 0.92051 0.93644 0.92303 0.95580 0.86030 0.96826 0.89265 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 7.88 37.16 0.29 -2.94 16 2 C 0.08 1.56 2.60 -67.71 -0.18 1.38 16 3 C -0.15 -2.52 8.21 37.16 0.31 -2.22 16 4 N -0.53 -11.39 4.26 -212.06 -0.90 -12.29 16 5 C 0.08 1.51 1.94 -67.66 -0.13 1.38 16 6 H 0.04 0.85 6.52 -51.93 -0.34 0.51 16 7 C -0.15 -2.29 7.33 37.16 0.27 -2.01 16 8 C 0.07 1.27 5.91 -3.77 -0.02 1.25 16 9 N -0.70 -14.40 6.90 -113.64 -0.78 -15.19 16 10 C 0.07 1.76 5.81 -3.77 -0.02 1.73 16 11 C 0.22 5.62 1.72 -68.81 -0.12 5.50 16 12 H 0.01 0.41 7.37 -51.93 -0.38 0.03 16 13 C -0.51 -13.80 7.35 -34.44 -0.25 -14.06 16 14 H 0.06 1.75 6.98 -52.48 -0.37 1.39 16 15 C 0.06 1.70 5.25 -17.82 -0.09 1.61 16 16 N -0.89 -25.31 12.04 55.43 0.67 -24.65 16 17 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H 0.05 0.88 4.81 -51.93 -0.25 0.63 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.05 1.14 7.18 -51.93 -0.37 0.76 16 24 H 0.10 2.17 5.96 -51.93 -0.31 1.86 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.90 4.30 -51.93 -0.22 0.68 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 1.04 6.83 -51.93 -0.35 0.68 16 29 H 0.06 0.88 4.41 -51.93 -0.23 0.65 16 30 H 0.04 0.60 7.99 -51.93 -0.41 0.18 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.32 5.84 8.90 -39.29 -0.35 5.49 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.09 2.38 6.83 -51.93 -0.35 2.02 16 36 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 263.32 15.07 3.97 3.97 Total: -1.00 -28.21 263.32 -7.64 -35.85 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.62 Total: 4.50 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 0.05 Total: -8.39 kcal Atomic # 7 Polarization: -51.11 SS G_CDS: -1.02 Total: -52.13 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.21 -7.64 -35.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218992282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.537 kcal (2) G-P(sol) polarization free energy of solvation -28.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds