Wall clock time and date at job start Mon Mar 30 2020 02:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 N 1.46907 * 109.47292 * 120.00011 * 2 1 3 5 5 C 1.46960 * 110.99568 * 275.99901 * 4 2 1 6 6 H 1.09003 * 109.48847 * 303.16918 * 5 4 2 7 7 C 1.52993 * 109.49427 * 63.21989 * 5 4 2 8 8 C 1.53051 * 109.36139 * 183.18702 * 5 4 2 9 9 N 1.46954 * 109.36520 * 301.59805 * 8 5 4 10 10 C 1.46960 * 110.90026 * 59.30932 * 9 8 5 11 11 C 1.46951 * 110.99729 * 39.79436 * 4 2 1 12 12 H 1.09000 * 109.49464 * 296.79915 * 11 4 2 13 13 C 1.50697 * 109.49429 * 56.84870 * 11 4 2 14 14 H 1.08005 * 119.99695 * 4.36907 * 13 11 4 15 15 C 1.37871 * 120.00580 * 184.37346 * 13 11 4 16 16 N 1.31514 * 119.99808 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00307 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46884 * 269.99822 * 17 15 13 19 19 H 1.48500 * 109.46901 * 29.99720 * 17 15 13 20 20 H 1.48494 * 109.47002 * 149.99660 * 17 15 13 21 21 H 1.09001 * 109.47073 * 294.14940 * 1 2 3 22 22 H 1.08994 * 109.47445 * 54.14817 * 1 2 3 23 23 H 1.08998 * 109.47233 * 174.15087 * 1 2 3 24 24 H 1.09002 * 109.47518 * 239.99777 * 2 1 3 25 25 H 1.09003 * 109.47247 * 175.76031 * 3 2 1 26 26 H 1.09001 * 109.46954 * 295.75097 * 3 2 1 27 27 H 1.08995 * 109.47177 * 55.75603 * 3 2 1 28 28 H 1.09006 * 109.46770 * 45.54327 * 7 5 4 29 29 H 1.08992 * 109.47523 * 165.54771 * 7 5 4 30 30 H 1.09004 * 109.47163 * 285.55359 * 7 5 4 31 31 H 1.09000 * 109.49085 * 61.56549 * 8 5 4 32 32 H 1.09006 * 109.48944 * 181.62699 * 8 5 4 33 33 H 1.00900 * 110.99877 * 295.44933 * 9 8 5 34 34 H 1.08998 * 109.50595 * 180.73666 * 10 9 8 35 35 H 1.08999 * 109.47017 * 60.66985 * 10 9 8 36 36 H 0.97004 * 119.99781 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0600 0.2171 2.3531 6 1 2.6817 1.0800 2.1142 7 6 0.6416 0.6856 2.6837 8 6 2.6488 -0.5187 3.5590 9 7 1.8306 -1.7032 3.8543 10 6 1.7897 -2.6129 2.7008 11 6 1.2014 -1.8769 1.4947 12 1 0.1810 -1.5670 1.7201 13 6 1.1956 -2.7948 0.2995 14 1 1.8008 -2.5608 -0.5639 15 6 0.4178 -3.9331 0.3082 16 7 -0.3187 -4.2182 1.3597 17 14 0.4102 -5.0705 -1.1737 18 1 -0.6569 -4.6483 -2.1161 19 1 1.7277 -5.0038 -1.8556 20 1 0.1538 -6.4633 -0.7272 21 1 -0.3633 0.4204 0.9377 22 1 -0.3634 0.6018 -0.8329 23 1 -0.3633 -1.0223 -0.1047 24 1 1.8934 -0.5139 -0.8900 25 1 3.1273 1.4434 0.0760 26 1 1.7401 1.9338 -0.9256 27 1 1.6159 1.9778 0.8495 28 1 -0.0354 -0.1687 2.6710 29 1 0.6313 1.1427 3.6730 30 1 0.3183 1.4163 1.9423 31 1 3.6692 -0.8287 3.3333 32 1 2.6530 0.1452 4.4236 33 1 0.8995 -1.4377 4.1383 34 1 1.1675 -3.4754 2.9395 35 1 2.8002 -2.9470 2.4656 36 1 -0.8657 -5.0193 1.3660 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218992351.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:59 Heat of formation + Delta-G solvation = 20.633216 kcal Electronic energy + Delta-G solvation = -15846.882620 eV Core-core repulsion = 13559.464418 eV Total energy + Delta-G solvation = -2287.418202 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.53649 -34.83375 -33.27817 -30.63840 -29.86763 -27.49190 -26.26880 -25.29781 -23.08242 -21.14671 -20.13321 -17.97744 -16.39338 -15.69850 -14.84178 -14.45799 -14.08266 -13.81990 -13.39446 -13.25866 -12.38540 -12.17226 -12.05964 -11.66832 -11.39762 -11.23179 -10.99878 -10.98124 -10.64791 -10.52919 -10.32457 -10.23159 -10.05577 -9.70269 -9.36257 -9.15686 -8.50106 -7.43045 -7.01498 -6.05905 -4.06661 3.28743 3.36263 3.40253 4.39087 4.89809 5.20492 5.31160 5.58322 5.62277 5.73339 5.74007 5.88129 5.94557 6.08477 6.18675 6.22535 6.33516 6.39403 6.46549 6.51885 6.55432 6.71009 6.85111 6.87703 7.14589 7.21744 7.36463 7.69355 7.77931 7.92442 8.14070 8.22674 8.39593 8.63649 9.00256 9.56780 11.02140 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032061 B = 0.013268 C = 0.010675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.119775 B = 2109.836171 C = 2622.211283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.094 3.906 3 C -0.155 4.155 4 N -0.522 5.522 5 C 0.037 3.963 6 H 0.073 0.927 7 C -0.194 4.194 8 C 0.068 3.932 9 N -0.697 5.697 10 C 0.066 3.934 11 C 0.182 3.818 12 H 0.017 0.983 13 C -0.498 4.498 14 H 0.061 0.939 15 C 0.060 3.940 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.283 1.283 19 H -0.274 1.274 20 H -0.287 1.287 21 H 0.060 0.940 22 H 0.033 0.967 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.327 0.673 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 8.242 0.955 8.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.014 4.014 3 C -0.212 4.212 4 N -0.246 5.246 5 C -0.074 4.074 6 H 0.091 0.909 7 C -0.253 4.253 8 C -0.063 4.063 9 N -0.325 5.325 10 C -0.063 4.063 11 C 0.074 3.926 12 H 0.034 0.966 13 C -0.537 4.537 14 H 0.079 0.921 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.722 3.278 18 H -0.209 1.209 19 H -0.199 1.199 20 H -0.213 1.213 21 H 0.079 0.921 22 H 0.052 0.948 23 H 0.104 0.896 24 H 0.094 0.906 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.144 0.856 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.791 7.566 1.253 8.162 hybrid contribution -1.554 0.139 -1.351 2.064 sum 1.237 7.705 -0.098 7.805 Atomic orbital electron populations 1.22921 0.97897 1.04108 1.00751 1.21370 0.92918 0.92112 0.95033 1.22164 1.01040 0.97268 1.00777 1.62660 1.54052 1.06552 1.01337 1.22464 0.94976 0.96276 0.93647 0.90906 1.22870 1.00113 1.01866 1.00409 1.22016 0.98210 0.91703 0.94369 1.60937 1.17288 1.15900 1.38363 1.22294 1.00831 0.95936 0.87266 1.19991 0.90814 0.86432 0.95344 0.96552 1.21032 1.25409 1.06261 1.00986 0.92116 1.24922 0.95353 0.97724 0.96131 1.69889 1.28298 1.26497 1.28588 0.86558 0.78346 0.80075 0.82837 1.20890 1.19869 1.21270 0.92109 0.94752 0.89558 0.90624 0.92687 0.93409 0.92732 0.91332 0.93662 0.92045 0.91215 0.92256 0.85648 0.88478 0.92804 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.88 7.64 37.15 0.28 -3.59 16 2 C 0.09 1.82 2.68 -67.71 -0.18 1.64 16 3 C -0.16 -2.43 7.90 37.16 0.29 -2.13 16 4 N -0.52 -10.90 4.68 -212.07 -0.99 -11.89 16 5 C 0.04 0.67 2.43 -67.66 -0.16 0.50 16 6 H 0.07 1.20 6.07 -51.93 -0.32 0.89 16 7 C -0.19 -3.25 6.55 37.15 0.24 -3.01 16 8 C 0.07 1.21 6.16 -3.77 -0.02 1.18 16 9 N -0.70 -14.07 6.85 -113.63 -0.78 -14.85 16 10 C 0.07 1.56 5.80 -3.76 -0.02 1.54 16 11 C 0.18 4.33 0.95 -68.81 -0.07 4.27 16 12 H 0.02 0.44 4.64 -51.93 -0.24 0.20 16 13 C -0.50 -13.11 6.61 -34.44 -0.23 -13.34 16 14 H 0.06 1.64 6.83 -52.48 -0.36 1.28 16 15 C 0.06 1.61 5.32 -17.82 -0.09 1.51 16 16 N -0.89 -24.66 11.67 55.43 0.65 -24.01 16 17 Si 0.89 21.05 29.54 -169.99 -5.02 16.02 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H 0.06 1.14 3.77 -51.93 -0.20 0.95 16 22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.09 2.00 5.79 -51.93 -0.30 1.70 16 24 H 0.08 1.59 7.21 -51.93 -0.37 1.22 16 25 H 0.05 0.84 7.93 -51.93 -0.41 0.43 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.81 4.96 -51.93 -0.26 0.55 16 28 H 0.07 1.33 4.69 -51.93 -0.24 1.08 16 29 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 30 H 0.06 0.98 4.63 -51.93 -0.24 0.74 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 33 H 0.33 6.44 7.64 -39.29 -0.30 6.14 16 34 H 0.10 2.55 6.48 -51.93 -0.34 2.22 16 35 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 253.80 15.07 3.82 3.82 Total: -1.00 -26.49 253.80 -7.52 -34.01 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.24 Total: 8.33 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 0.04 Total: -11.44 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -1.12 Total: -50.75 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -26.49 -7.52 -34.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218992351.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.640 kcal (2) G-P(sol) polarization free energy of solvation -26.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds