Wall clock time and date at job start Mon Mar 30 2020 02:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 N 1.46907 * 109.47292 * 120.00011 * 2 1 3 5 5 C 1.46960 * 110.99568 * 275.99901 * 4 2 1 6 6 H 1.09003 * 109.48847 * 303.16918 * 5 4 2 7 7 C 1.52993 * 109.49427 * 63.21989 * 5 4 2 8 8 C 1.53051 * 109.36139 * 183.18702 * 5 4 2 9 9 N 1.46954 * 109.36520 * 301.59805 * 8 5 4 10 10 C 1.46960 * 110.90026 * 59.30932 * 9 8 5 11 11 C 1.46951 * 110.99729 * 39.79436 * 4 2 1 12 12 H 1.09000 * 109.49464 * 296.79915 * 11 4 2 13 13 C 1.50697 * 109.49429 * 56.84870 * 11 4 2 14 14 H 1.08005 * 119.99695 * 4.36907 * 13 11 4 15 15 C 1.37871 * 120.00580 * 184.37346 * 13 11 4 16 16 N 1.31514 * 119.99808 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 120.00307 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46884 * 269.99822 * 17 15 13 19 19 H 1.48500 * 109.46901 * 29.99720 * 17 15 13 20 20 H 1.48494 * 109.47002 * 149.99660 * 17 15 13 21 21 H 1.09001 * 109.47073 * 294.14940 * 1 2 3 22 22 H 1.08994 * 109.47445 * 54.14817 * 1 2 3 23 23 H 1.08998 * 109.47233 * 174.15087 * 1 2 3 24 24 H 1.09002 * 109.47518 * 239.99777 * 2 1 3 25 25 H 1.09003 * 109.47247 * 175.76031 * 3 2 1 26 26 H 1.09001 * 109.46954 * 295.75097 * 3 2 1 27 27 H 1.08995 * 109.47177 * 55.75603 * 3 2 1 28 28 H 1.09006 * 109.46770 * 45.54327 * 7 5 4 29 29 H 1.08992 * 109.47523 * 165.54771 * 7 5 4 30 30 H 1.09004 * 109.47163 * 285.55359 * 7 5 4 31 31 H 1.09000 * 109.49085 * 61.56549 * 8 5 4 32 32 H 1.09006 * 109.48944 * 181.62699 * 8 5 4 33 33 H 1.00900 * 110.99877 * 295.44933 * 9 8 5 34 34 H 1.08998 * 109.50595 * 180.73666 * 10 9 8 35 35 H 1.08999 * 109.47017 * 60.66985 * 10 9 8 36 36 H 0.97004 * 119.99781 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0600 0.2171 2.3531 6 1 2.6817 1.0800 2.1142 7 6 0.6416 0.6856 2.6837 8 6 2.6488 -0.5187 3.5590 9 7 1.8306 -1.7032 3.8543 10 6 1.7897 -2.6129 2.7008 11 6 1.2014 -1.8769 1.4947 12 1 0.1810 -1.5670 1.7201 13 6 1.1956 -2.7948 0.2995 14 1 1.8008 -2.5608 -0.5639 15 6 0.4178 -3.9331 0.3082 16 7 -0.3187 -4.2182 1.3597 17 14 0.4102 -5.0705 -1.1737 18 1 -0.6569 -4.6483 -2.1161 19 1 1.7277 -5.0038 -1.8556 20 1 0.1538 -6.4633 -0.7272 21 1 -0.3633 0.4204 0.9377 22 1 -0.3634 0.6018 -0.8329 23 1 -0.3633 -1.0223 -0.1047 24 1 1.8934 -0.5139 -0.8900 25 1 3.1273 1.4434 0.0760 26 1 1.7401 1.9338 -0.9256 27 1 1.6159 1.9778 0.8495 28 1 -0.0354 -0.1687 2.6710 29 1 0.6313 1.1427 3.6730 30 1 0.3183 1.4163 1.9423 31 1 3.6692 -0.8287 3.3333 32 1 2.6530 0.1452 4.4236 33 1 0.8995 -1.4377 4.1383 34 1 1.1675 -3.4754 2.9395 35 1 2.8002 -2.9470 2.4656 36 1 -0.8657 -5.0193 1.3660 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218992351.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:58 Heat of formation + Delta-G solvation = 1.117520 kcal Electronic energy + Delta-G solvation = -15847.728885 eV Core-core repulsion = 13559.464418 eV Total energy + Delta-G solvation = -2288.264466 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.13446 -36.42372 -35.20977 -32.35904 -31.46315 -29.02344 -27.76249 -27.16269 -24.77557 -22.87880 -21.70100 -19.60567 -18.32407 -17.36459 -16.45836 -16.24775 -15.78792 -15.43671 -14.97154 -14.81392 -14.14496 -13.70522 -13.63677 -13.17615 -12.98280 -12.87386 -12.71723 -12.56199 -12.31898 -12.12060 -12.01994 -11.93588 -11.83946 -11.30699 -11.19570 -10.83534 -10.52450 -9.11378 -8.68552 -8.11320 -6.17179 1.38696 1.41314 1.50531 2.42049 3.18340 3.33169 3.68261 4.14199 4.21456 4.30421 4.34856 4.49206 4.57488 4.69335 4.79331 4.81374 4.84156 4.86202 5.02141 5.04673 5.08874 5.13469 5.19741 5.29873 5.43440 5.56888 5.63909 5.73135 5.83984 6.08685 6.36572 6.52667 6.65303 6.87965 6.99075 7.49307 8.95313 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032061 B = 0.013268 C = 0.010675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.119775 B = 2109.836171 C = 2622.211283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.091 3.909 3 C -0.144 4.144 4 N -0.536 5.536 5 C 0.036 3.964 6 H 0.098 0.902 7 C -0.185 4.185 8 C 0.066 3.934 9 N -0.694 5.694 10 C 0.079 3.921 11 C 0.195 3.805 12 H -0.005 1.005 13 C -0.506 4.506 14 H 0.047 0.953 15 C 0.017 3.983 16 N -0.918 5.918 17 Si 0.949 3.051 18 H -0.279 1.279 19 H -0.273 1.273 20 H -0.284 1.284 21 H 0.068 0.932 22 H 0.054 0.946 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.332 0.668 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.411 10.234 1.057 10.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.018 4.018 3 C -0.201 4.201 4 N -0.260 5.260 5 C -0.074 4.074 6 H 0.116 0.884 7 C -0.243 4.243 8 C -0.064 4.064 9 N -0.322 5.322 10 C -0.051 4.051 11 C 0.086 3.914 12 H 0.013 0.987 13 C -0.545 4.545 14 H 0.065 0.935 15 C -0.182 4.182 16 N -0.558 5.558 17 Si 0.775 3.225 18 H -0.205 1.205 19 H -0.198 1.198 20 H -0.210 1.210 21 H 0.087 0.913 22 H 0.073 0.927 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.148 0.852 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.316 9.579 1.357 10.227 hybrid contribution -1.690 -0.432 -1.370 2.218 sum 1.626 9.147 -0.013 9.290 Atomic orbital electron populations 1.22788 0.98161 1.01721 1.02043 1.21396 0.92696 0.94243 0.93445 1.22055 1.01327 0.94293 1.02431 1.62537 1.53415 1.06893 1.03160 1.22586 0.96170 0.96326 0.92341 0.88381 1.22738 0.98375 1.00908 1.02328 1.22157 0.97145 0.91153 0.95932 1.60853 1.17893 1.16915 1.36561 1.21914 0.98656 0.95895 0.88673 1.19661 0.90117 0.87344 0.94233 0.98730 1.21248 1.24878 1.06926 1.01487 0.93457 1.25564 0.95260 0.99066 0.98336 1.69999 1.28940 1.26851 1.29973 0.85693 0.78237 0.78392 0.80139 1.20484 1.19756 1.20992 0.91299 0.92675 0.93948 0.93172 0.92085 0.91528 0.91384 0.94409 0.91017 0.91024 0.91956 0.88666 0.85169 0.91605 0.94742 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.27 7.64 71.98 0.55 -6.71 16 2 C 0.09 3.41 2.68 44.91 0.12 3.53 16 3 C -0.14 -4.01 7.90 71.98 0.57 -3.44 16 4 N -0.54 -22.00 4.68 -824.84 -3.86 -25.86 16 5 C 0.04 1.19 2.43 44.92 0.11 1.29 16 6 H 0.10 2.81 6.07 -2.39 -0.01 2.79 16 7 C -0.19 -5.69 6.55 71.98 0.47 -5.21 16 8 C 0.07 2.19 6.16 86.31 0.53 2.72 16 9 N -0.69 -27.54 6.85 -513.42 -3.52 -31.06 16 10 C 0.08 3.82 5.80 86.31 0.50 4.32 16 11 C 0.20 9.48 0.95 44.18 0.04 9.52 16 12 H 0.00 -0.24 4.64 -2.39 -0.01 -0.26 16 13 C -0.51 -27.46 6.61 25.60 0.17 -27.30 16 14 H 0.05 2.63 6.83 -2.91 -0.02 2.61 16 15 C 0.02 0.91 5.32 84.65 0.45 1.36 16 16 N -0.92 -52.15 11.67 21.44 0.25 -51.90 16 17 Si 0.95 44.04 29.54 68.60 2.03 46.06 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H 0.07 2.51 3.77 -2.39 -0.01 2.50 16 22 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 23 H 0.04 1.99 5.79 -2.39 -0.01 1.98 16 24 H 0.05 2.12 7.21 -2.39 -0.02 2.10 16 25 H 0.06 1.64 7.93 -2.39 -0.02 1.63 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.07 1.72 4.96 -2.39 -0.01 1.71 16 28 H 0.04 1.41 4.69 -2.38 -0.01 1.40 16 29 H 0.07 1.83 8.06 -2.39 -0.02 1.81 16 30 H 0.07 2.04 4.63 -2.39 -0.01 2.03 16 31 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.10 2.52 8.13 -2.38 -0.02 2.51 16 33 H 0.33 12.80 7.64 -89.69 -0.69 12.11 16 34 H 0.07 3.60 6.48 -2.39 -0.02 3.58 16 35 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 Total: -1.00 -58.27 253.80 -1.19 -59.46 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.39 Total: 23.21 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 3.51 Total: -19.92 kcal Atomic # 7 Polarization: -101.69 SS G_CDS: -7.12 Total: -108.81 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Total: -58.27 -1.19 -59.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218992351.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.579 kcal (2) G-P(sol) polarization free energy of solvation -58.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds