Wall clock time and date at job start Mon Mar 30 2020 02:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46976 * 2 1 4 4 N 1.46896 * 109.47215 * 119.99771 * 2 1 3 5 5 C 1.46952 * 111.00087 * 157.05996 * 4 2 1 6 6 H 1.09002 * 109.49200 * 63.19918 * 5 4 2 7 7 C 1.50703 * 109.48992 * 303.15416 * 5 4 2 8 8 H 1.08005 * 119.99738 * 355.57339 * 7 5 4 9 9 C 1.37874 * 120.00321 * 175.56701 * 7 5 4 10 10 N 1.31518 * 120.00409 * 160.79997 * 9 7 5 11 11 Si 1.86804 * 120.00026 * 340.80567 * 9 7 5 12 12 H 1.48503 * 109.46897 * 270.00140 * 11 9 7 13 13 H 1.48495 * 109.47480 * 149.99687 * 11 9 7 14 14 H 1.48507 * 109.46882 * 29.99504 * 11 9 7 15 15 C 1.53052 * 109.38514 * 183.17994 * 5 4 2 16 16 N 1.46956 * 109.36233 * 301.60974 * 15 5 4 17 17 C 1.46961 * 110.88236 * 59.31737 * 16 15 5 18 18 C 1.46957 * 111.02053 * 280.87355 * 4 2 1 19 19 H 1.08998 * 109.47212 * 296.80077 * 18 4 2 20 20 C 1.53004 * 109.49082 * 56.85101 * 18 4 2 21 21 H 1.08993 * 109.47022 * 314.75724 * 1 2 3 22 22 H 1.08994 * 109.46848 * 74.75933 * 1 2 3 23 23 H 1.09001 * 109.46540 * 194.75349 * 1 2 3 24 24 H 1.08994 * 109.47002 * 239.99708 * 2 1 3 25 25 H 1.09002 * 109.47198 * 182.30864 * 3 2 1 26 26 H 1.09007 * 109.46621 * 302.30486 * 3 2 1 27 27 H 1.08996 * 109.46919 * 62.30157 * 3 2 1 28 28 H 0.96998 * 119.99054 * 354.92942 * 10 9 7 29 29 H 1.09001 * 109.49133 * 61.57173 * 15 5 4 30 30 H 1.08994 * 109.49170 * 181.64025 * 15 5 4 31 31 H 1.00901 * 111.00016 * 295.45347 * 16 15 5 32 32 H 1.08999 * 109.48655 * 60.64699 * 17 16 15 33 33 H 1.08994 * 109.48787 * 180.71168 * 17 16 15 34 34 H 1.08993 * 109.47079 * 159.63391 * 20 18 4 35 35 H 1.08998 * 109.47231 * 279.63527 * 20 18 4 36 36 H 1.09005 * 109.46845 * 39.63260 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 3.3864 -1.1932 0.9974 6 1 4.0617 -0.3528 0.8368 7 6 3.4170 -2.0998 -0.2061 8 1 2.5000 -2.3427 -0.7226 9 6 4.6154 -2.6189 -0.6480 10 7 4.6256 -3.6773 -1.4287 11 14 6.2246 -1.8192 -0.1376 12 1 6.5955 -0.7771 -1.1284 13 1 7.2926 -2.8493 -0.0792 14 1 6.0647 -1.1954 1.2006 15 6 3.8295 -1.9747 2.2365 16 7 3.7614 -1.0991 3.4148 17 6 2.3945 -0.5987 3.6172 18 6 1.9515 0.1827 2.3781 19 1 2.6101 1.0390 2.2334 20 6 0.5139 0.6705 2.5692 21 1 -0.3633 0.7235 0.7297 22 1 -0.3633 0.2701 -0.9915 23 1 -0.3632 -0.9938 0.2617 24 1 1.8934 -0.5139 -0.8899 25 1 3.1293 1.4428 -0.0414 26 1 1.6433 1.9681 -0.8687 27 1 1.7108 1.9442 0.9099 28 1 3.7962 -4.1364 -1.6340 29 1 3.1708 -2.8310 2.3812 30 1 4.8536 -2.3221 2.1004 31 1 4.4177 -0.3367 3.3372 32 1 1.7195 -1.4394 3.7776 33 1 2.3725 0.0569 4.4877 34 1 0.3767 1.0024 3.5982 35 1 0.3187 1.5007 1.8904 36 1 -0.1777 -0.1444 2.3549 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218992490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:04 Heat of formation + Delta-G solvation = 18.036903 kcal Electronic energy + Delta-G solvation = -15701.010249 eV Core-core repulsion = 13413.479462 eV Total energy + Delta-G solvation = -2287.530787 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.38656 -35.17341 -33.42460 -31.37199 -30.25737 -27.43265 -26.63567 -24.99840 -22.80274 -20.86782 -20.35858 -18.68734 -17.42879 -15.71603 -15.15609 -14.93482 -14.13589 -13.58713 -13.32422 -13.09503 -12.77415 -12.69954 -12.02390 -11.84508 -11.56187 -11.41320 -11.26637 -11.05019 -10.86231 -10.62660 -10.48464 -10.35786 -10.07931 -9.70871 -9.56121 -9.08397 -8.34096 -7.71822 -7.27710 -6.48439 -4.07140 3.36322 3.39061 3.53795 4.45729 4.63926 4.97014 5.20802 5.30923 5.49733 5.59347 5.67157 5.73281 5.85255 5.88486 5.96876 6.09156 6.20199 6.23298 6.25965 6.32609 6.41576 6.46649 6.53028 6.60033 6.70478 6.86209 6.98774 7.24012 7.47845 7.82647 7.95393 8.07259 8.33600 8.42861 8.95147 9.58171 10.90044 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.013646 C = 0.011247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.636493 B = 2051.391868 C = 2488.849672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.078 3.922 3 C -0.181 4.181 4 N -0.511 5.511 5 C 0.164 3.836 6 H -0.010 1.010 7 C -0.590 4.590 8 H 0.065 0.935 9 C 0.034 3.966 10 N -0.901 5.901 11 Si 1.039 2.961 12 H -0.288 1.288 13 H -0.284 1.284 14 H -0.276 1.276 15 C 0.060 3.940 16 N -0.698 5.698 17 C 0.069 3.931 18 C 0.037 3.963 19 H 0.032 0.968 20 C -0.148 4.148 21 H 0.062 0.938 22 H 0.041 0.959 23 H 0.058 0.942 24 H 0.098 0.902 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.270 0.730 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.327 0.673 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.064 9.068 6.571 12.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.031 4.031 3 C -0.240 4.240 4 N -0.236 5.236 5 C 0.054 3.946 6 H 0.007 0.993 7 C -0.628 4.628 8 H 0.083 0.917 9 C -0.172 4.172 10 N -0.535 5.535 11 Si 0.867 3.133 12 H -0.215 1.215 13 H -0.210 1.210 14 H -0.202 1.202 15 C -0.069 4.069 16 N -0.325 5.325 17 C -0.062 4.062 18 C -0.073 4.073 19 H 0.050 0.950 20 C -0.205 4.205 21 H 0.081 0.919 22 H 0.060 0.940 23 H 0.078 0.922 24 H 0.116 0.884 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.143 0.857 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.782 8.012 6.907 11.234 hybrid contribution -1.156 1.460 -0.808 2.030 sum -4.937 9.473 6.100 12.301 Atomic orbital electron populations 1.22342 0.96100 1.02224 1.00431 1.21635 0.94186 0.91660 0.95604 1.22517 1.01326 0.99095 1.01061 1.62358 1.25280 1.34513 1.01430 1.20248 0.84580 0.93823 0.95910 0.99302 1.21884 0.96023 1.31585 1.13334 0.91668 1.25636 1.01959 0.94744 0.94823 1.70796 1.30887 1.15789 1.35992 0.84137 0.76315 0.76391 0.76413 1.21525 1.21034 1.20161 1.22616 1.01060 0.96100 0.87097 1.60901 1.05870 1.22930 1.42765 1.22069 0.90824 0.98326 0.94952 1.22396 0.96363 0.94702 0.93886 0.95008 1.22274 0.97026 1.01098 1.00120 0.91946 0.93979 0.92247 0.88356 0.93104 0.93180 0.92593 0.91982 0.90956 0.91355 0.85709 0.90751 0.91789 0.93437 0.92309 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.02 37.16 0.30 -2.20 16 2 C 0.08 1.50 2.62 -67.71 -0.18 1.32 16 3 C -0.18 -3.08 8.05 37.16 0.30 -2.79 16 4 N -0.51 -10.51 4.27 -212.07 -0.91 -11.41 16 5 C 0.16 3.83 1.38 -68.81 -0.09 3.73 16 6 H -0.01 -0.25 5.99 -51.93 -0.31 -0.56 16 7 C -0.59 -16.08 7.74 -34.44 -0.27 -16.35 16 8 H 0.07 1.94 7.15 -52.48 -0.38 1.57 16 9 C 0.03 0.97 5.32 -17.82 -0.09 0.87 16 10 N -0.90 -27.16 13.70 55.43 0.76 -26.40 16 11 Si 1.04 24.82 26.31 -169.99 -4.47 20.35 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -6.08 5.60 56.52 0.32 -5.76 16 15 C 0.06 1.35 5.44 -3.77 -0.02 1.33 16 16 N -0.70 -13.22 6.91 -113.64 -0.79 -14.01 16 17 C 0.07 1.16 5.90 -3.77 -0.02 1.13 16 18 C 0.04 0.64 1.93 -67.66 -0.13 0.51 16 19 H 0.03 0.57 6.44 -51.93 -0.33 0.23 16 20 C -0.15 -2.09 7.33 37.16 0.27 -1.82 16 21 H 0.06 0.89 4.31 -51.93 -0.22 0.67 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 24 H 0.10 2.24 5.94 -51.93 -0.31 1.93 16 25 H 0.05 0.94 7.45 -51.93 -0.39 0.55 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.86 4.58 -51.93 -0.24 0.63 16 28 H 0.27 8.15 8.73 -40.82 -0.36 7.79 16 29 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 30 H 0.07 1.58 5.18 -51.93 -0.27 1.31 16 31 H 0.33 5.88 8.89 -39.29 -0.35 5.53 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.58 7.98 -51.93 -0.41 0.16 16 35 H 0.06 0.79 4.61 -51.93 -0.24 0.55 16 36 H 0.07 1.04 6.78 -51.93 -0.35 0.68 16 LS Contribution 257.57 15.07 3.88 3.88 Total: -1.00 -28.50 257.57 -7.03 -35.53 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.57 Total: 6.32 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 0.06 Total: -14.25 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.93 Total: -51.82 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -4.47 Total: 20.35 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.50 -7.03 -35.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218992490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.569 kcal (2) G-P(sol) polarization free energy of solvation -28.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds