Wall clock time and date at job start Mon Mar 30 2020 02:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46976 * 2 1 4 4 N 1.46896 * 109.47215 * 119.99771 * 2 1 3 5 5 C 1.46952 * 111.00087 * 157.05996 * 4 2 1 6 6 H 1.09002 * 109.49200 * 63.19918 * 5 4 2 7 7 C 1.50703 * 109.48992 * 303.15416 * 5 4 2 8 8 H 1.08005 * 119.99738 * 355.57339 * 7 5 4 9 9 C 1.37874 * 120.00321 * 175.56701 * 7 5 4 10 10 N 1.31518 * 120.00409 * 160.79997 * 9 7 5 11 11 Si 1.86804 * 120.00026 * 340.80567 * 9 7 5 12 12 H 1.48503 * 109.46897 * 270.00140 * 11 9 7 13 13 H 1.48495 * 109.47480 * 149.99687 * 11 9 7 14 14 H 1.48507 * 109.46882 * 29.99504 * 11 9 7 15 15 C 1.53052 * 109.38514 * 183.17994 * 5 4 2 16 16 N 1.46956 * 109.36233 * 301.60974 * 15 5 4 17 17 C 1.46961 * 110.88236 * 59.31737 * 16 15 5 18 18 C 1.46957 * 111.02053 * 280.87355 * 4 2 1 19 19 H 1.08998 * 109.47212 * 296.80077 * 18 4 2 20 20 C 1.53004 * 109.49082 * 56.85101 * 18 4 2 21 21 H 1.08993 * 109.47022 * 314.75724 * 1 2 3 22 22 H 1.08994 * 109.46848 * 74.75933 * 1 2 3 23 23 H 1.09001 * 109.46540 * 194.75349 * 1 2 3 24 24 H 1.08994 * 109.47002 * 239.99708 * 2 1 3 25 25 H 1.09002 * 109.47198 * 182.30864 * 3 2 1 26 26 H 1.09007 * 109.46621 * 302.30486 * 3 2 1 27 27 H 1.08996 * 109.46919 * 62.30157 * 3 2 1 28 28 H 0.96998 * 119.99054 * 354.92942 * 10 9 7 29 29 H 1.09001 * 109.49133 * 61.57173 * 15 5 4 30 30 H 1.08994 * 109.49170 * 181.64025 * 15 5 4 31 31 H 1.00901 * 111.00016 * 295.45347 * 16 15 5 32 32 H 1.08999 * 109.48655 * 60.64699 * 17 16 15 33 33 H 1.08994 * 109.48787 * 180.71168 * 17 16 15 34 34 H 1.08993 * 109.47079 * 159.63391 * 20 18 4 35 35 H 1.08998 * 109.47231 * 279.63527 * 20 18 4 36 36 H 1.09005 * 109.46845 * 39.63260 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 3.3864 -1.1932 0.9974 6 1 4.0617 -0.3528 0.8368 7 6 3.4170 -2.0998 -0.2061 8 1 2.5000 -2.3427 -0.7226 9 6 4.6154 -2.6189 -0.6480 10 7 4.6256 -3.6773 -1.4287 11 14 6.2246 -1.8192 -0.1376 12 1 6.5955 -0.7771 -1.1284 13 1 7.2926 -2.8493 -0.0792 14 1 6.0647 -1.1954 1.2006 15 6 3.8295 -1.9747 2.2365 16 7 3.7614 -1.0991 3.4148 17 6 2.3945 -0.5987 3.6172 18 6 1.9515 0.1827 2.3781 19 1 2.6101 1.0390 2.2334 20 6 0.5139 0.6705 2.5692 21 1 -0.3633 0.7235 0.7297 22 1 -0.3633 0.2701 -0.9915 23 1 -0.3632 -0.9938 0.2617 24 1 1.8934 -0.5139 -0.8899 25 1 3.1293 1.4428 -0.0414 26 1 1.6433 1.9681 -0.8687 27 1 1.7108 1.9442 0.9099 28 1 3.7962 -4.1364 -1.6340 29 1 3.1708 -2.8310 2.3812 30 1 4.8536 -2.3221 2.1004 31 1 4.4177 -0.3367 3.3372 32 1 1.7195 -1.4394 3.7776 33 1 2.3725 0.0569 4.4877 34 1 0.3767 1.0024 3.5982 35 1 0.3187 1.5007 1.8904 36 1 -0.1777 -0.1444 2.3549 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218992490.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:04 Heat of formation + Delta-G solvation = -4.434070 kcal Electronic energy + Delta-G solvation = -15701.984663 eV Core-core repulsion = 13413.479462 eV Total energy + Delta-G solvation = -2288.505201 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93307 -36.70884 -35.36585 -33.10898 -31.79836 -28.94081 -28.05426 -26.77693 -24.39807 -22.51307 -22.00025 -20.25969 -19.51616 -17.30629 -16.62248 -16.49311 -15.76629 -15.43244 -14.89225 -14.65861 -14.31244 -14.19806 -13.66045 -13.31263 -13.11349 -13.02019 -12.75899 -12.61102 -12.32192 -12.21911 -12.09120 -11.86159 -11.72406 -11.39266 -11.23441 -10.94552 -10.50743 -9.33692 -8.87908 -8.74531 -6.32607 1.42411 1.46206 1.64475 2.45486 3.00904 3.13606 3.48248 3.99440 4.10043 4.25058 4.29691 4.39065 4.42187 4.51788 4.58063 4.65294 4.74155 4.82045 4.86980 4.90026 5.01948 5.05644 5.07988 5.15782 5.30249 5.32216 5.49448 5.56186 5.73145 6.00572 6.13513 6.30798 6.48599 6.69018 6.75797 7.41205 8.62338 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.013646 C = 0.011247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.636493 B = 2051.391868 C = 2488.849672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.073 3.927 3 C -0.172 4.172 4 N -0.528 5.528 5 C 0.170 3.830 6 H -0.014 1.014 7 C -0.584 4.584 8 H 0.023 0.977 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 1.081 2.919 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.245 1.245 15 C 0.070 3.930 16 N -0.693 5.693 17 C 0.068 3.932 18 C 0.035 3.965 19 H 0.036 0.964 20 C -0.142 4.142 21 H 0.091 0.909 22 H 0.053 0.947 23 H 0.041 0.959 24 H 0.049 0.951 25 H 0.030 0.970 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.253 0.747 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.338 0.662 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.376 11.775 8.764 15.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.036 4.036 3 C -0.231 4.231 4 N -0.253 5.253 5 C 0.060 3.940 6 H 0.003 0.997 7 C -0.622 4.622 8 H 0.041 0.959 9 C -0.215 4.215 10 N -0.571 5.571 11 Si 0.903 3.097 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.169 1.169 15 C -0.060 4.060 16 N -0.320 5.320 17 C -0.062 4.062 18 C -0.075 4.075 19 H 0.054 0.946 20 C -0.199 4.199 21 H 0.109 0.891 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.154 0.846 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.126 10.745 9.117 14.684 hybrid contribution -1.185 0.617 -1.502 2.010 sum -5.311 11.363 7.615 14.674 Atomic orbital electron populations 1.22267 0.93617 1.02128 1.02065 1.21604 0.96135 0.92517 0.93296 1.22424 0.99983 0.97561 1.03116 1.62325 1.23197 1.36547 1.03220 1.20035 0.86551 0.92940 0.94506 0.99712 1.22015 0.94282 1.31497 1.14422 0.95866 1.26999 1.05668 0.94482 0.94366 1.70925 1.29912 1.17684 1.38584 0.83620 0.72360 0.75907 0.77850 1.20498 1.21085 1.16910 1.22280 0.99800 0.95913 0.88012 1.60836 1.07591 1.23297 1.40266 1.22217 0.89193 0.98637 0.96181 1.22540 0.98711 0.94115 0.92135 0.94646 1.22210 0.94299 1.01011 1.02370 0.89096 0.92814 0.93961 0.93253 0.95076 0.91422 0.90206 0.93776 0.93250 0.92245 0.84557 0.91762 0.87957 0.90443 0.91189 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 8.02 71.98 0.58 -3.87 16 2 C 0.07 2.79 2.62 44.92 0.12 2.91 16 3 C -0.17 -5.47 8.05 71.98 0.58 -4.89 16 4 N -0.53 -21.32 4.27 -824.85 -3.52 -24.84 16 5 C 0.17 7.94 1.38 44.18 0.06 8.00 16 6 H -0.01 -0.69 5.99 -2.39 -0.01 -0.70 16 7 C -0.58 -33.14 7.74 25.60 0.20 -32.94 16 8 H 0.02 1.48 7.15 -2.91 -0.02 1.46 16 9 C -0.02 -0.94 5.32 84.65 0.45 -0.49 16 10 N -0.94 -58.89 13.70 21.45 0.29 -58.60 16 11 Si 1.08 50.27 26.31 68.60 1.80 52.08 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 13 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 14 H -0.25 -10.09 5.60 99.48 0.56 -9.53 16 15 C 0.07 3.08 5.44 86.31 0.47 3.55 16 16 N -0.69 -24.39 6.91 -513.45 -3.55 -27.94 16 17 C 0.07 2.04 5.90 86.31 0.51 2.55 16 18 C 0.03 1.09 1.93 44.92 0.09 1.17 16 19 H 0.04 1.11 6.44 -2.39 -0.02 1.09 16 20 C -0.14 -3.38 7.33 71.98 0.53 -2.86 16 21 H 0.09 2.29 4.31 -2.39 -0.01 2.28 16 22 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.04 1.44 8.10 -2.39 -0.02 1.42 16 24 H 0.05 2.35 5.94 -2.39 -0.01 2.33 16 25 H 0.03 1.09 7.45 -2.39 -0.02 1.07 16 26 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.08 2.14 4.58 -2.39 -0.01 2.13 16 28 H 0.25 16.27 8.73 -92.71 -0.81 15.46 16 29 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.06 2.69 5.18 -2.39 -0.01 2.68 16 31 H 0.34 10.93 8.89 -89.69 -0.80 10.13 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.08 1.44 7.98 -2.39 -0.02 1.42 16 35 H 0.07 1.52 4.61 -2.39 -0.01 1.51 16 36 H 0.06 1.61 6.78 -2.38 -0.02 1.59 16 Total: -1.00 -64.70 257.57 -1.31 -66.01 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.09 Total: 20.19 kcal Atomic # 6 Polarization: -30.46 SS G_CDS: 3.58 Total: -26.88 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -6.78 Total: -111.39 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 1.80 Total: 52.08 kcal Total: -64.70 -1.31 -66.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218992490.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.573 kcal (2) G-P(sol) polarization free energy of solvation -64.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds