Wall clock time and date at job start Mon Mar 30 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52994 * 109.47558 * 2 1 4 4 N 1.46907 * 109.47321 * 120.00659 * 2 1 3 5 5 C 1.46962 * 110.99243 * 303.79365 * 4 2 1 6 6 C 1.53057 * 109.35974 * 176.81002 * 5 4 2 7 7 H 1.08992 * 109.49024 * 298.41409 * 6 5 4 8 8 C 1.52996 * 109.48792 * 178.36738 * 6 5 4 9 9 N 1.46956 * 109.36201 * 58.40497 * 6 5 4 10 10 C 1.47010 * 110.89057 * 300.67438 * 9 6 5 11 11 C 1.46956 * 111.00063 * 179.97438 * 4 2 1 12 12 H 1.09002 * 109.49189 * 63.21630 * 11 4 2 13 13 C 1.50697 * 109.48764 * 303.17048 * 11 4 2 14 14 H 1.07998 * 120.00114 * 0.04728 * 13 11 4 15 15 C 1.37879 * 119.99866 * 180.02562 * 13 11 4 16 16 N 1.31517 * 119.99834 * 180.02562 * 15 13 11 17 17 Si 1.86795 * 120.00151 * 0.02562 * 15 13 11 18 18 H 1.48494 * 109.47081 * 89.99941 * 17 15 13 19 19 H 1.48500 * 109.47410 * 210.00110 * 17 15 13 20 20 H 1.48501 * 109.47269 * 330.00331 * 17 15 13 21 21 H 1.09008 * 109.47299 * 300.00005 * 1 2 3 22 22 H 1.09006 * 109.47426 * 59.99435 * 1 2 3 23 23 H 1.08996 * 109.47743 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47299 * 239.99995 * 2 1 3 25 25 H 1.09006 * 109.47318 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47347 * 300.00414 * 3 2 1 27 27 H 1.08999 * 109.47007 * 60.00256 * 3 2 1 28 28 H 1.08997 * 109.49026 * 296.77772 * 5 4 2 29 29 H 1.09004 * 109.48989 * 56.84776 * 5 4 2 30 30 H 1.09005 * 109.47171 * 60.00277 * 8 6 5 31 31 H 1.08995 * 109.47509 * 180.02562 * 8 6 5 32 32 H 1.09003 * 109.47542 * 300.00712 * 8 6 5 33 33 H 1.00899 * 111.00107 * 176.81084 * 9 6 5 34 34 H 1.08997 * 109.48391 * 299.36050 * 10 9 6 35 35 H 1.09001 * 109.51555 * 179.27801 * 10 9 6 36 36 H 0.97001 * 119.99894 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6927 1.1994 5 6 1.4756 -0.0807 2.4198 6 6 1.9445 -0.8777 3.6394 7 1 1.5682 -1.8985 3.5733 8 6 1.4133 -0.2195 4.9143 9 7 3.4135 -0.8974 3.6733 10 6 3.9579 -1.5094 2.4526 11 6 3.4887 -0.7128 1.2330 12 1 3.8650 0.3081 1.2991 13 6 4.0114 -1.3610 -0.0230 14 1 3.3218 -1.7214 -0.7719 15 6 5.3702 -1.4936 -0.2161 16 7 5.8264 -2.0589 -1.3124 17 14 6.5629 -0.8704 1.0793 18 1 6.8467 -1.9547 2.0534 19 1 7.8279 -0.4487 0.4256 20 1 5.9624 0.2877 1.7889 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9562 0.8900 28 1 1.8287 0.9474 2.4996 29 1 0.3865 -0.0892 2.3765 30 1 0.3237 -0.2033 4.8880 31 1 1.7476 -0.7870 5.7827 32 1 1.7903 0.8011 4.9805 33 1 3.7499 -1.3731 4.4971 34 1 3.6048 -2.5376 2.3728 35 1 5.0470 -1.5009 2.4955 36 1 6.7823 -2.1519 -1.4485 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218993032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:44 Heat of formation + Delta-G solvation = 12.658016 kcal Electronic energy + Delta-G solvation = -15504.830141 eV Core-core repulsion = 13217.066108 eV Total energy + Delta-G solvation = -2287.764033 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.97290 -35.38612 -33.27088 -31.34315 -30.22346 -27.73113 -26.57083 -24.72217 -23.69597 -21.11931 -19.98370 -18.30411 -16.73934 -16.03279 -14.77092 -14.46084 -14.31345 -14.02730 -13.40374 -13.28902 -13.14718 -12.54551 -12.38758 -12.00054 -11.66585 -11.35475 -11.32749 -11.18071 -10.73181 -10.55752 -10.44417 -10.30483 -10.13726 -9.77208 -9.38888 -9.01813 -8.55895 -7.88580 -7.23119 -6.08254 -4.07423 3.25623 3.38395 3.44577 4.38891 4.71093 4.75560 5.23389 5.32483 5.48368 5.64417 5.69452 5.79660 5.85802 5.98691 6.03836 6.09942 6.15063 6.26335 6.27711 6.30511 6.35247 6.46433 6.54620 6.55712 6.67309 6.92130 7.04659 7.27397 7.42866 7.73019 7.88137 7.99929 8.18755 8.67489 8.98952 9.53608 11.04083 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026503 B = 0.014553 C = 0.010539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.234336 B = 1923.577261 C = 2656.112970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.084 3.916 3 C -0.179 4.179 4 N -0.522 5.522 5 C 0.056 3.944 6 C 0.086 3.914 7 H 0.040 0.960 8 C -0.141 4.141 9 N -0.694 5.694 10 C 0.056 3.944 11 C 0.191 3.809 12 H 0.012 0.988 13 C -0.505 4.505 14 H 0.083 0.917 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.877 3.123 18 H -0.280 1.280 19 H -0.296 1.296 20 H -0.260 1.260 21 H 0.047 0.953 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.097 0.903 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.033 0.967 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.327 0.673 34 H 0.037 0.963 35 H 0.060 0.940 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.986 4.230 8.164 12.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 C -0.238 4.238 4 N -0.246 5.246 5 C -0.073 4.073 6 C -0.024 4.024 7 H 0.058 0.942 8 C -0.200 4.200 9 N -0.325 5.325 10 C -0.072 4.072 11 C 0.083 3.917 12 H 0.029 0.971 13 C -0.544 4.544 14 H 0.101 0.899 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.707 3.293 18 H -0.207 1.207 19 H -0.224 1.224 20 H -0.184 1.184 21 H 0.066 0.934 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.115 0.885 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.144 0.856 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.930 4.329 7.790 11.929 hybrid contribution 0.974 0.092 0.895 1.326 sum -6.955 4.421 8.685 11.973 Atomic orbital electron populations 1.21933 0.96237 1.01554 1.00499 1.21563 0.93186 0.92258 0.95413 1.22387 1.02872 0.98308 1.00232 1.62285 1.10477 1.51694 1.00112 1.22194 0.98617 0.96192 0.90298 1.21465 0.88357 0.98006 0.94620 0.94195 1.21780 1.00175 1.01321 0.96692 1.60716 1.07366 1.59257 1.05152 1.22588 0.97967 0.97301 0.89385 1.19708 0.83588 0.94991 0.93420 0.97083 1.20983 0.92225 1.38803 1.02381 0.89883 1.24925 0.98100 0.94700 0.95329 1.69878 1.13953 1.43766 1.25945 0.87002 0.80527 0.80155 0.81594 1.20677 1.22378 1.18440 0.93402 0.93077 0.92406 0.88517 0.91464 0.93314 0.93846 0.94882 0.91336 0.92522 0.93073 0.92184 0.85635 0.94481 0.92167 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.84 37.15 0.33 -1.92 16 2 C 0.08 1.64 2.69 -67.72 -0.18 1.45 16 3 C -0.18 -3.30 8.50 37.15 0.32 -2.98 16 4 N -0.52 -10.99 4.54 -219.94 -1.00 -11.99 16 5 C 0.06 1.00 4.12 -3.76 -0.02 0.98 16 6 C 0.09 1.45 3.20 -67.65 -0.22 1.23 16 7 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 8 C -0.14 -1.85 9.46 37.16 0.35 -1.50 16 9 N -0.69 -13.14 6.55 -106.55 -0.70 -13.84 16 10 C 0.06 1.27 5.47 -3.74 -0.02 1.25 16 11 C 0.19 4.59 1.04 -68.81 -0.07 4.52 16 12 H 0.01 0.30 5.54 -51.93 -0.29 0.01 16 13 C -0.51 -14.02 8.51 -34.44 -0.29 -14.31 16 14 H 0.08 2.50 6.69 -52.49 -0.35 2.15 16 15 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 16 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 17 Si 0.88 21.95 24.36 -169.99 -4.14 17.80 16 18 H -0.28 -6.81 6.88 56.52 0.39 -6.42 16 19 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 20 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 21 H 0.05 0.69 6.28 -51.92 -0.33 0.36 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.10 2.14 6.28 -51.92 -0.33 1.81 16 25 H 0.07 1.42 6.48 -51.93 -0.34 1.08 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.74 6.56 -51.93 -0.34 0.40 16 28 H 0.03 0.62 6.57 -51.93 -0.34 0.28 16 29 H 0.07 1.09 6.06 -51.93 -0.31 0.78 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.33 5.38 8.83 -39.29 -0.35 5.03 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.43 3.32 -51.93 -0.17 1.25 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 263.26 15.07 3.97 3.97 Total: -1.00 -29.59 263.26 -6.70 -36.30 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -5.71 Total: 3.46 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 0.10 Total: -9.33 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.92 Total: -52.20 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.14 Total: 17.80 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.59 -6.70 -36.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218993032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.955 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds