Wall clock time and date at job start Mon Mar 30 2020 02:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52994 * 109.47558 * 2 1 4 4 N 1.46907 * 109.47321 * 120.00659 * 2 1 3 5 5 C 1.46962 * 110.99243 * 303.79365 * 4 2 1 6 6 C 1.53057 * 109.35974 * 176.81002 * 5 4 2 7 7 H 1.08992 * 109.49024 * 298.41409 * 6 5 4 8 8 C 1.52996 * 109.48792 * 178.36738 * 6 5 4 9 9 N 1.46956 * 109.36201 * 58.40497 * 6 5 4 10 10 C 1.47010 * 110.89057 * 300.67438 * 9 6 5 11 11 C 1.46956 * 111.00063 * 179.97438 * 4 2 1 12 12 H 1.09002 * 109.49189 * 63.21630 * 11 4 2 13 13 C 1.50697 * 109.48764 * 303.17048 * 11 4 2 14 14 H 1.07998 * 120.00114 * 0.04728 * 13 11 4 15 15 C 1.37879 * 119.99866 * 180.02562 * 13 11 4 16 16 N 1.31517 * 119.99834 * 180.02562 * 15 13 11 17 17 Si 1.86795 * 120.00151 * 0.02562 * 15 13 11 18 18 H 1.48494 * 109.47081 * 89.99941 * 17 15 13 19 19 H 1.48500 * 109.47410 * 210.00110 * 17 15 13 20 20 H 1.48501 * 109.47269 * 330.00331 * 17 15 13 21 21 H 1.09008 * 109.47299 * 300.00005 * 1 2 3 22 22 H 1.09006 * 109.47426 * 59.99435 * 1 2 3 23 23 H 1.08996 * 109.47743 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47299 * 239.99995 * 2 1 3 25 25 H 1.09006 * 109.47318 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.47347 * 300.00414 * 3 2 1 27 27 H 1.08999 * 109.47007 * 60.00256 * 3 2 1 28 28 H 1.08997 * 109.49026 * 296.77772 * 5 4 2 29 29 H 1.09004 * 109.48989 * 56.84776 * 5 4 2 30 30 H 1.09005 * 109.47171 * 60.00277 * 8 6 5 31 31 H 1.08995 * 109.47509 * 180.02562 * 8 6 5 32 32 H 1.09003 * 109.47542 * 300.00712 * 8 6 5 33 33 H 1.00899 * 111.00107 * 176.81084 * 9 6 5 34 34 H 1.08997 * 109.48391 * 299.36050 * 10 9 6 35 35 H 1.09001 * 109.51555 * 179.27801 * 10 9 6 36 36 H 0.97001 * 119.99894 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6927 1.1994 5 6 1.4756 -0.0807 2.4198 6 6 1.9445 -0.8777 3.6394 7 1 1.5682 -1.8985 3.5733 8 6 1.4133 -0.2195 4.9143 9 7 3.4135 -0.8974 3.6733 10 6 3.9579 -1.5094 2.4526 11 6 3.4887 -0.7128 1.2330 12 1 3.8650 0.3081 1.2991 13 6 4.0114 -1.3610 -0.0230 14 1 3.3218 -1.7214 -0.7719 15 6 5.3702 -1.4936 -0.2161 16 7 5.8264 -2.0589 -1.3124 17 14 6.5629 -0.8704 1.0793 18 1 6.8467 -1.9547 2.0534 19 1 7.8279 -0.4487 0.4256 20 1 5.9624 0.2877 1.7889 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9562 0.8900 28 1 1.8287 0.9474 2.4996 29 1 0.3865 -0.0892 2.3765 30 1 0.3237 -0.2033 4.8880 31 1 1.7476 -0.7870 5.7827 32 1 1.7903 0.8011 4.9805 33 1 3.7499 -1.3731 4.4971 34 1 3.6048 -2.5376 2.3728 35 1 5.0470 -1.5009 2.4955 36 1 6.7823 -2.1519 -1.4485 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218993032.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:44 Heat of formation + Delta-G solvation = -10.921001 kcal Electronic energy + Delta-G solvation = -15505.852604 eV Core-core repulsion = 13217.066108 eV Total energy + Delta-G solvation = -2288.786496 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57335 -36.86402 -35.23436 -33.15192 -31.74848 -29.33384 -28.00449 -26.22553 -25.54173 -22.80038 -21.47229 -19.98974 -18.78982 -17.69752 -16.31502 -16.16640 -15.90553 -15.74052 -15.13092 -14.96926 -14.55990 -14.43933 -13.73949 -13.40792 -13.07559 -12.82470 -12.74975 -12.63943 -12.43374 -12.30794 -12.02972 -11.96938 -11.73745 -11.53433 -11.14201 -10.96870 -10.70273 -9.43046 -8.90541 -8.31167 -6.34021 1.24726 1.32915 1.44168 2.27947 2.99638 3.21223 3.30327 3.99829 4.07400 4.31638 4.33014 4.37827 4.46418 4.55430 4.58149 4.63736 4.77115 4.81783 4.86305 4.92629 4.95294 5.02586 5.13141 5.20182 5.29282 5.41329 5.43678 5.49584 5.61364 6.01430 6.07435 6.37276 6.59718 6.72776 6.76438 7.31060 8.84802 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.026503 B = 0.014553 C = 0.010539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.234336 B = 1923.577261 C = 2656.112970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.078 3.922 3 C -0.170 4.170 4 N -0.536 5.536 5 C 0.055 3.945 6 C 0.081 3.919 7 H 0.035 0.965 8 C -0.131 4.131 9 N -0.693 5.693 10 C 0.063 3.937 11 C 0.199 3.801 12 H -0.005 1.005 13 C -0.503 4.503 14 H 0.044 0.956 15 C 0.018 3.982 16 N -0.943 5.943 17 Si 0.940 3.060 18 H -0.265 1.265 19 H -0.296 1.296 20 H -0.255 1.255 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.030 0.970 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.029 0.971 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.345 0.655 34 H 0.023 0.977 35 H 0.050 0.950 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.389 5.369 10.665 15.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.030 4.030 3 C -0.229 4.229 4 N -0.260 5.260 5 C -0.073 4.073 6 C -0.029 4.029 7 H 0.053 0.947 8 C -0.189 4.189 9 N -0.326 5.326 10 C -0.067 4.067 11 C 0.090 3.910 12 H 0.012 0.988 13 C -0.542 4.542 14 H 0.062 0.938 15 C -0.180 4.180 16 N -0.584 5.584 17 Si 0.768 3.232 18 H -0.191 1.191 19 H -0.223 1.223 20 H -0.179 1.179 21 H 0.087 0.913 22 H 0.089 0.911 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.163 0.837 34 H 0.041 0.959 35 H 0.068 0.932 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.358 5.469 10.320 14.966 hybrid contribution 1.306 -0.275 0.051 1.335 sum -8.053 5.195 10.371 14.121 Atomic orbital electron populations 1.21826 0.92651 1.02033 1.02490 1.21581 0.95975 0.92112 0.93374 1.22280 1.00450 0.98059 1.02107 1.62241 1.08467 1.53138 1.02127 1.22352 1.00055 0.95804 0.89094 1.21642 0.86922 0.98102 0.96195 0.94680 1.21704 1.01466 1.00884 0.94808 1.60652 1.08951 1.58782 1.04198 1.22266 0.97397 0.96357 0.90636 1.19417 0.85779 0.93539 0.92260 0.98803 1.21176 0.91809 1.37952 1.03247 0.93814 1.25685 0.99941 0.95051 0.97285 1.70016 1.14434 1.45809 1.28102 0.85978 0.78020 0.80002 0.79216 1.19144 1.22331 1.17910 0.91319 0.91126 0.92697 0.92687 0.95060 0.91293 0.92018 0.95286 0.88588 0.90243 0.91501 0.92304 0.83701 0.95895 0.93217 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 8.84 71.98 0.64 -3.18 16 2 C 0.08 3.02 2.69 44.91 0.12 3.14 16 3 C -0.17 -6.15 8.50 71.98 0.61 -5.54 16 4 N -0.54 -22.34 4.54 -849.76 -3.86 -26.20 16 5 C 0.05 1.82 4.12 86.31 0.36 2.18 16 6 C 0.08 2.49 3.20 44.92 0.14 2.63 16 7 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 8 C -0.13 -2.83 9.46 71.98 0.68 -2.15 16 9 N -0.69 -24.63 6.55 -491.02 -3.21 -27.85 16 10 C 0.06 2.80 5.47 86.30 0.47 3.28 16 11 C 0.20 9.66 1.04 44.17 0.05 9.71 16 12 H -0.01 -0.28 5.54 -2.39 -0.01 -0.30 16 13 C -0.50 -29.09 8.51 25.60 0.22 -28.87 16 14 H 0.04 2.81 6.69 -2.91 -0.02 2.79 16 15 C 0.02 1.07 5.45 84.65 0.46 1.53 16 16 N -0.94 -59.24 13.96 21.45 0.30 -58.94 16 17 Si 0.94 46.13 24.36 68.60 1.67 47.80 16 18 H -0.27 -12.31 6.88 99.48 0.68 -11.63 16 19 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 20 H -0.25 -12.18 6.53 99.48 0.65 -11.53 16 21 H 0.07 1.70 6.28 -2.38 -0.01 1.68 16 22 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 23 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.05 2.56 6.28 -2.38 -0.01 2.55 16 25 H 0.03 1.33 6.48 -2.38 -0.02 1.31 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.06 1.98 6.56 -2.39 -0.02 1.96 16 28 H 0.03 1.00 6.57 -2.39 -0.02 0.99 16 29 H 0.10 2.66 6.06 -2.38 -0.01 2.65 16 30 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.34 10.32 8.83 -89.69 -0.79 9.53 16 34 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 2.30 3.32 -2.39 -0.01 2.29 16 36 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -66.21 263.26 -1.17 -67.38 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.19 Total: 15.08 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 3.75 Total: -17.28 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -6.78 Total: -112.99 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.67 Total: 47.80 kcal Total: -66.21 -1.17 -67.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218993032.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.461 kcal (2) G-P(sol) polarization free energy of solvation -66.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds