Wall clock time and date at job start Mon Mar 30 2020 03:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47130 * 2 1 4 4 C 1.44247 * 110.99977 * 66.04627 * 3 2 1 5 5 C 1.54252 * 108.65434 * 219.84726 * 4 3 2 6 6 C 1.46141 * 111.89803 * 281.40679 * 5 4 3 7 7 N 1.48104 * 112.19730 * 60.85852 * 6 5 4 8 8 C 1.46901 * 110.99736 * 156.47739 * 7 6 5 9 9 C 1.44264 * 109.97479 * 279.70462 * 7 6 5 10 10 H 1.09003 * 108.86772 * 333.11348 * 9 7 6 11 11 C 1.50705 * 108.86406 * 214.70093 * 9 7 6 12 12 H 1.08002 * 119.99713 * 296.83967 * 11 9 7 13 13 C 1.37873 * 120.00101 * 116.84328 * 11 9 7 14 14 N 1.31513 * 120.00127 * 173.10630 * 13 11 9 15 15 Si 1.86804 * 120.00044 * 353.11006 * 13 11 9 16 16 H 1.48497 * 109.47368 * 86.02820 * 15 13 11 17 17 H 1.48500 * 109.47062 * 206.03004 * 15 13 11 18 18 H 1.48499 * 109.46721 * 326.02881 * 15 13 11 19 19 C 1.48203 * 110.99587 * 194.29916 * 3 2 1 20 20 H 1.09003 * 109.47366 * 59.99728 * 1 2 3 21 21 H 1.08999 * 109.47202 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46883 * 299.99665 * 1 2 3 23 23 H 1.09004 * 109.46883 * 240.00335 * 2 1 3 24 24 H 1.09003 * 109.47366 * 120.00272 * 2 1 3 25 25 H 1.09006 * 109.60866 * 100.09870 * 4 3 2 26 26 H 1.09005 * 109.61098 * 339.60231 * 4 3 2 27 27 H 1.09000 * 108.99547 * 42.02713 * 5 4 3 28 28 H 1.08994 * 108.99997 * 160.78054 * 5 4 3 29 29 H 1.08991 * 108.94050 * 181.55778 * 6 5 4 30 30 H 1.09000 * 108.93426 * 300.16603 * 6 5 4 31 31 H 1.09002 * 109.47208 * 66.55313 * 8 7 6 32 32 H 1.09008 * 109.46763 * 186.55163 * 8 7 6 33 33 H 1.08996 * 109.47016 * 306.54639 * 8 7 6 34 34 H 0.97002 * 120.00068 * 180.02562 * 14 13 11 35 35 H 1.08994 * 108.82534 * 70.83389 * 19 3 2 36 36 H 1.08993 * 108.73845 * 312.46190 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6765 2.0546 1.2307 5 6 1.2554 3.5021 0.9040 6 6 2.4103 4.3646 0.6633 7 7 3.2230 3.9038 -0.4860 8 6 4.0026 5.0103 -1.0568 9 6 4.0845 2.8210 -0.0777 10 1 4.2903 2.9171 0.9884 11 6 5.3846 2.9214 -0.8332 12 1 5.3932 2.8225 -1.9086 13 6 6.5630 3.1393 -0.1514 14 7 7.7112 3.0920 -0.7910 15 14 6.5288 3.5016 1.6808 16 1 6.5184 2.2241 2.4379 17 1 7.7327 4.2875 2.0526 18 1 5.3081 4.2812 2.0085 19 6 3.4607 1.4387 -0.3417 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8900 25 1 2.5412 2.0662 1.8943 26 1 0.8496 1.5330 1.7127 27 1 0.6255 3.4962 0.0144 28 1 0.6820 3.9022 1.7401 29 1 2.0602 5.3776 0.4652 30 1 3.0353 4.3763 1.5562 31 1 4.7507 5.3379 -0.3350 32 1 4.4989 4.6734 -1.9670 33 1 3.3366 5.8404 -1.2921 34 1 8.5403 3.2450 -0.3113 35 1 3.5813 1.1944 -1.3971 36 1 3.9898 0.6947 0.2537 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218994250.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:55 Heat of formation + Delta-G solvation = -2.765932 kcal Electronic energy + Delta-G solvation = -15443.711447 eV Core-core repulsion = 13155.278581 eV Total energy + Delta-G solvation = -2288.432865 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.38519 -37.39465 -35.05410 -33.41540 -32.10479 -29.21976 -27.94893 -25.83439 -25.02008 -22.64367 -21.26442 -20.54754 -19.17656 -17.23652 -16.86400 -16.20804 -15.84543 -15.79070 -15.10169 -14.70196 -14.59595 -14.24889 -13.87975 -13.19757 -13.11650 -13.06029 -12.89840 -12.73562 -12.49372 -12.13926 -11.97363 -11.75547 -11.59211 -11.44804 -11.37383 -11.04167 -10.81740 -9.00213 -8.80224 -8.38306 -6.39710 1.19256 1.22387 1.30543 2.21110 2.83358 3.18567 3.41283 4.05040 4.11282 4.26435 4.33129 4.45608 4.47319 4.58952 4.66733 4.67869 4.72834 4.83983 4.95789 5.00274 5.03320 5.07860 5.16161 5.19812 5.36610 5.41848 5.45556 5.46383 5.57822 6.08635 6.30339 6.49468 6.53967 6.70441 6.79365 7.25093 8.77993 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033904 B = 0.011536 C = 0.010562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.653053 B = 2426.568277 C = 2650.434047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.049 3.951 3 N -0.551 5.551 4 C 0.063 3.937 5 C -0.101 4.101 6 C 0.049 3.951 7 N -0.529 5.529 8 C 0.067 3.933 9 C 0.185 3.815 10 H -0.001 1.001 11 C -0.507 4.507 12 H 0.041 0.959 13 C 0.027 3.973 14 N -0.935 5.935 15 Si 0.928 3.072 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.261 1.261 19 C 0.098 3.902 20 H 0.056 0.944 21 H 0.073 0.927 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.026 0.974 25 H 0.009 0.991 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.004 0.996 31 H -0.003 1.003 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.267 0.733 35 H 0.052 0.948 36 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.968 -1.481 5.943 15.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.078 4.078 3 N -0.276 5.276 4 C -0.066 4.066 5 C -0.139 4.139 6 C -0.078 4.078 7 N -0.253 5.253 8 C -0.081 4.081 9 C 0.076 3.924 10 H 0.017 0.983 11 C -0.546 4.546 12 H 0.059 0.941 13 C -0.173 4.173 14 N -0.575 5.575 15 Si 0.754 3.246 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.186 1.186 19 C -0.030 4.030 20 H 0.075 0.925 21 H 0.092 0.908 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.044 0.956 25 H 0.028 0.972 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.023 0.977 31 H 0.015 0.985 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -14.320 -1.402 5.247 15.315 hybrid contribution 1.963 -0.012 1.717 2.608 sum -12.357 -1.413 6.963 14.254 Atomic orbital electron populations 1.21754 0.92991 1.02166 1.02383 1.22146 0.97363 0.88288 1.00022 1.60548 1.16056 1.15904 1.35074 1.21881 0.98973 0.95956 0.89764 1.20554 0.97096 0.93880 1.02416 1.21217 0.95842 0.99595 0.91154 1.61820 1.25077 1.08112 1.30281 1.21924 0.95219 0.92277 0.98718 1.19405 0.90163 0.89745 0.93065 0.98332 1.21102 0.90704 1.48531 0.94266 0.94050 1.25753 0.95047 0.94682 1.01787 1.70014 0.98317 1.50815 1.38332 0.86047 0.77705 0.79203 0.81670 1.19471 1.20800 1.18552 1.22295 0.85480 0.96045 0.99139 0.92476 0.90826 0.92082 0.91772 0.95604 0.97221 0.88989 0.90668 0.89379 0.90552 0.97749 0.98451 0.93181 0.91567 0.92335 0.92979 0.97201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.87 71.98 0.71 -2.21 16 2 C 0.05 1.40 5.56 86.30 0.48 1.88 16 3 N -0.55 -19.39 4.15 -895.07 -3.71 -23.10 16 4 C 0.06 1.96 5.12 87.22 0.45 2.41 16 5 C -0.10 -2.98 5.66 28.91 0.16 -2.81 16 6 C 0.05 1.76 5.01 83.96 0.42 2.18 16 7 N -0.53 -22.92 4.65 -915.72 -4.26 -27.18 16 8 C 0.07 2.91 8.43 127.69 1.08 3.99 16 9 C 0.18 8.86 1.72 44.98 0.08 8.94 16 10 H 0.00 -0.04 3.10 -2.39 -0.01 -0.05 16 11 C -0.51 -28.57 6.12 25.60 0.16 -28.42 16 12 H 0.04 2.61 7.66 -2.91 -0.02 2.59 16 13 C 0.03 1.53 5.41 84.65 0.46 1.99 16 14 N -0.94 -57.38 13.96 21.45 0.30 -57.08 16 15 Si 0.93 44.84 26.75 68.60 1.84 46.67 16 16 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 17 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 18 H -0.26 -12.16 6.46 99.48 0.64 -11.52 16 19 C 0.10 4.30 5.06 86.37 0.44 4.74 16 20 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 21 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.06 1.21 6.37 -2.38 -0.02 1.19 16 23 H 0.06 1.87 8.02 -2.38 -0.02 1.85 16 24 H 0.03 0.72 8.12 -2.39 -0.02 0.70 16 25 H 0.01 0.34 6.97 -2.38 -0.02 0.32 16 26 H 0.09 2.30 5.83 -2.38 -0.01 2.29 16 27 H 0.07 2.26 8.12 -2.39 -0.02 2.24 16 28 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.08 2.38 7.70 -2.39 -0.02 2.36 16 30 H 0.00 0.17 7.07 -2.39 -0.02 0.15 16 31 H 0.00 -0.15 7.62 -2.39 -0.02 -0.17 16 32 H 0.05 2.42 6.69 -2.38 -0.02 2.41 16 33 H 0.07 2.38 7.89 -2.39 -0.02 2.36 16 34 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.05 2.43 7.97 -2.39 -0.02 2.41 16 36 H 0.01 0.44 8.03 -2.39 -0.02 0.42 16 Total: -1.00 -63.38 268.05 -0.44 -63.83 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: 0.97 Total: 4.19 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 4.43 Total: -7.33 kcal Atomic # 7 Polarization: -99.69 SS G_CDS: -7.67 Total: -107.36 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.84 Total: 46.67 kcal Total: -63.38 -0.44 -63.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218994250.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.061 kcal (2) G-P(sol) polarization free energy of solvation -63.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds