Wall clock time and date at job start Mon Mar 30 2020 03:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.46799 * 2 1 4 4 C 1.44258 * 110.95865 * 300.32346 * 3 2 1 5 5 C 1.54316 * 112.53788 * 217.58121 * 4 3 2 6 6 C 1.54315 * 111.72657 * 318.91180 * 5 4 3 7 7 N 1.44182 * 112.61137 * 318.92592 * 6 5 4 8 8 C 1.46902 * 110.99619 * 217.52422 * 7 6 5 9 9 C 1.48075 * 109.89934 * 94.35466 * 7 6 5 10 10 C 1.46095 * 112.15765 * 279.63351 * 9 7 6 11 11 H 1.09006 * 108.94615 * 300.09096 * 10 9 7 12 12 C 1.50697 * 108.94713 * 181.37198 * 10 9 7 13 13 H 1.08003 * 119.99772 * 244.05534 * 12 10 9 14 14 C 1.37876 * 120.00048 * 64.05615 * 12 10 9 15 15 N 1.31517 * 119.99872 * 179.97438 * 14 12 10 16 16 Si 1.86803 * 119.99994 * 359.97438 * 14 12 10 17 17 H 1.48504 * 109.47015 * 270.00177 * 16 14 12 18 18 H 1.48498 * 109.46930 * 30.00386 * 16 14 12 19 19 H 1.48498 * 109.46976 * 150.00077 * 16 14 12 20 20 H 1.09007 * 109.46841 * 303.49029 * 1 2 3 21 21 H 1.09000 * 109.47650 * 63.48597 * 1 2 3 22 22 H 1.08995 * 109.47216 * 183.49053 * 1 2 3 23 23 H 1.08999 * 109.46750 * 240.00149 * 2 1 3 24 24 H 1.08994 * 109.46957 * 119.99801 * 2 1 3 25 25 H 1.09001 * 108.89679 * 96.79519 * 4 3 2 26 26 H 1.08997 * 108.80864 * 338.30916 * 4 3 2 27 27 H 1.09000 * 109.03156 * 198.33583 * 5 4 3 28 28 H 1.08998 * 109.03388 * 79.49409 * 5 4 3 29 29 H 1.09007 * 108.85526 * 198.11509 * 6 5 4 30 30 H 1.09001 * 108.85485 * 79.73413 * 6 5 4 31 31 H 1.08995 * 109.47338 * 297.46217 * 8 7 6 32 32 H 1.08997 * 109.47394 * 57.46952 * 8 7 6 33 33 H 1.09008 * 109.46722 * 177.46012 * 8 7 6 34 34 H 1.08994 * 108.94502 * 158.94301 * 9 7 6 35 35 H 1.08998 * 108.87404 * 40.26816 * 9 7 6 36 36 H 0.97003 * 119.99621 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5503 2.0982 -1.1628 5 6 2.6092 3.0670 -1.7297 6 6 3.3584 3.8150 -0.6070 7 7 2.4829 4.2372 0.4579 8 6 2.8793 5.5541 0.9743 9 6 2.4771 3.2237 1.5374 10 6 1.6008 2.0960 1.2297 11 1 0.5836 2.4643 1.0965 12 6 1.6233 1.1293 2.3856 13 1 2.0164 0.1327 2.2484 14 6 1.1421 1.5170 3.6181 15 7 1.1613 0.6731 4.6266 16 14 0.4629 3.2409 3.8554 17 1 1.5589 4.1515 4.2736 18 1 -0.1210 3.7230 2.5780 19 1 -0.5891 3.2185 4.9032 20 1 -0.3633 0.5671 0.8571 21 1 -0.3634 0.4588 -0.9196 22 1 -0.3633 -1.0257 0.0626 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 0.6609 2.6674 -0.8927 26 1 1.2847 1.3758 -1.9346 27 1 2.1162 3.7950 -2.3741 28 1 3.3287 2.5008 -2.3211 29 1 3.8448 4.6930 -1.0323 30 1 4.1229 3.1566 -0.1944 31 1 3.8807 5.4911 1.3999 32 1 2.8751 6.2797 0.1610 33 1 2.1759 5.8687 1.7454 34 1 2.1390 3.6928 2.4614 35 1 3.4926 2.8541 1.6795 36 1 0.8231 0.9461 5.4938 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218994741.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:50 Heat of formation + Delta-G solvation = 30.790751 kcal Electronic energy + Delta-G solvation = -15666.865366 eV Core-core repulsion = 13379.887628 eV Total energy + Delta-G solvation = -2286.977738 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.98296 -35.90968 -33.26815 -31.51237 -30.36033 -27.67291 -25.53512 -25.32692 -22.43414 -22.17795 -19.75052 -18.58249 -16.91024 -15.73808 -14.84728 -14.64107 -14.28946 -14.13917 -13.79042 -13.01141 -12.76468 -12.49529 -12.31837 -12.00507 -11.53330 -11.33482 -11.31790 -10.92792 -10.78674 -10.59379 -10.43996 -10.10852 -9.96799 -9.57593 -9.44740 -8.81587 -8.62092 -7.70309 -7.22466 -6.10927 -4.11600 3.22178 3.35151 3.41016 4.35563 4.56495 4.94721 5.23271 5.41224 5.53836 5.66655 5.73969 5.90825 6.00987 6.04391 6.15003 6.17863 6.22307 6.28535 6.36029 6.37364 6.48047 6.57471 6.65745 6.67581 6.78539 7.13129 7.15818 7.36713 7.50513 7.71393 7.82189 8.05627 8.24831 8.67607 8.95502 9.49668 11.00198 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025104 B = 0.016822 C = 0.011296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.091078 B = 1664.110733 C = 2478.072936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.062 3.938 3 N -0.525 5.525 4 C 0.065 3.935 5 C -0.100 4.100 6 C 0.068 3.932 7 N -0.549 5.549 8 C 0.028 3.972 9 C 0.069 3.931 10 C 0.187 3.813 11 H 0.011 0.989 12 C -0.517 4.517 13 H 0.092 0.908 14 C 0.073 3.927 15 N -0.896 5.896 16 Si 0.869 3.131 17 H -0.279 1.279 18 H -0.258 1.258 19 H -0.294 1.294 20 H 0.073 0.927 21 H 0.035 0.965 22 H 0.044 0.956 23 H 0.046 0.954 24 H 0.095 0.905 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.020 0.980 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.641 5.303 -9.304 10.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.066 4.066 3 N -0.249 5.249 4 C -0.065 4.065 5 C -0.139 4.139 6 C -0.061 4.061 7 N -0.273 5.273 8 C -0.121 4.121 9 C -0.057 4.057 10 C 0.079 3.921 11 H 0.029 0.971 12 C -0.556 4.556 13 H 0.109 0.891 14 C -0.129 4.129 15 N -0.534 5.534 16 Si 0.698 3.302 17 H -0.206 1.206 18 H -0.182 1.182 19 H -0.221 1.221 20 H 0.092 0.908 21 H 0.054 0.946 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.113 0.887 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.642 5.311 -9.316 10.848 hybrid contribution -0.459 0.997 0.691 1.297 sum 1.182 6.308 -8.625 10.751 Atomic orbital electron populations 1.22362 0.98946 1.01118 1.01397 1.22137 0.92594 0.90371 1.01490 1.61611 1.59245 1.01890 1.02106 1.21687 0.96041 0.95417 0.93346 1.21967 0.98192 0.97211 0.96521 1.21679 0.93962 0.97551 0.92919 1.61674 1.52073 1.02619 1.10915 1.22384 0.98475 0.91505 0.99687 1.21676 1.00843 0.91768 0.91437 1.18638 0.93073 0.91498 0.88896 0.97125 1.21296 1.41387 1.00301 0.92589 0.89062 1.24955 0.95260 0.96751 0.95954 1.69872 1.46691 1.35163 1.01638 0.87088 0.78931 0.85736 0.78451 1.20569 1.18235 1.22116 0.90843 0.94630 0.93696 0.93572 0.88677 0.94561 0.93507 0.92936 0.92609 0.93535 0.93779 0.96162 0.92148 0.92177 0.92623 0.93870 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.44 9.24 37.16 0.34 -3.10 16 2 C 0.06 1.23 5.37 -3.82 -0.02 1.21 16 3 N -0.53 -11.04 4.43 -232.34 -1.03 -12.06 16 4 C 0.06 1.19 4.17 -4.55 -0.02 1.17 16 5 C -0.10 -1.60 6.42 -25.35 -0.16 -1.76 16 6 C 0.07 1.16 5.28 -4.59 -0.02 1.14 16 7 N -0.55 -10.63 4.52 -247.40 -1.12 -11.74 16 8 C 0.03 0.46 9.24 60.07 0.55 1.01 16 9 C 0.07 1.56 4.04 -6.45 -0.03 1.53 16 10 C 0.19 4.42 0.75 -71.48 -0.05 4.37 16 11 H 0.01 0.29 5.46 -51.93 -0.28 0.00 16 12 C -0.52 -13.93 7.40 -34.44 -0.25 -14.19 16 13 H 0.09 2.63 5.55 -52.48 -0.29 2.34 16 14 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 15 N -0.90 -26.65 13.96 55.43 0.77 -25.88 16 16 Si 0.87 21.54 24.58 -169.99 -4.18 17.36 16 17 H -0.28 -6.75 6.91 56.52 0.39 -6.36 16 18 H -0.26 -6.33 6.39 56.52 0.36 -5.96 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H 0.07 1.63 6.22 -51.93 -0.32 1.31 16 21 H 0.03 0.62 7.02 -51.93 -0.36 0.25 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.81 8.05 -51.93 -0.42 0.40 16 24 H 0.10 2.12 5.40 -51.93 -0.28 1.84 16 25 H 0.04 0.73 7.16 -51.93 -0.37 0.35 16 26 H 0.05 0.78 7.04 -51.93 -0.37 0.42 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.69 7.49 -51.93 -0.39 0.30 16 30 H 0.04 0.81 7.16 -51.93 -0.37 0.44 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.84 7.98 -51.93 -0.41 0.42 16 33 H 0.06 1.00 8.06 -51.92 -0.42 0.58 16 34 H 0.06 1.32 3.20 -51.93 -0.17 1.16 16 35 H 0.04 1.01 7.36 -51.93 -0.38 0.63 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 259.27 15.07 3.91 3.91 Total: -1.00 -28.66 259.27 -7.12 -35.78 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.72 Total: -0.71 kcal Atomic # 6 Polarization: -6.90 SS G_CDS: 0.24 Total: -6.66 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -1.37 Total: -49.69 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.18 Total: 17.36 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.66 -7.12 -35.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218994741.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.575 kcal (2) G-P(sol) polarization free energy of solvation -28.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds