Wall clock time and date at job start Mon Mar 30 2020 03:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.46799 * 2 1 4 4 C 1.44258 * 110.95865 * 300.32346 * 3 2 1 5 5 C 1.54316 * 112.53788 * 217.58121 * 4 3 2 6 6 C 1.54315 * 111.72657 * 318.91180 * 5 4 3 7 7 N 1.44182 * 112.61137 * 318.92592 * 6 5 4 8 8 C 1.46902 * 110.99619 * 217.52422 * 7 6 5 9 9 C 1.48075 * 109.89934 * 94.35466 * 7 6 5 10 10 C 1.46095 * 112.15765 * 279.63351 * 9 7 6 11 11 H 1.09006 * 108.94615 * 300.09096 * 10 9 7 12 12 C 1.50697 * 108.94713 * 181.37198 * 10 9 7 13 13 H 1.08003 * 119.99772 * 244.05534 * 12 10 9 14 14 C 1.37876 * 120.00048 * 64.05615 * 12 10 9 15 15 N 1.31517 * 119.99872 * 179.97438 * 14 12 10 16 16 Si 1.86803 * 119.99994 * 359.97438 * 14 12 10 17 17 H 1.48504 * 109.47015 * 270.00177 * 16 14 12 18 18 H 1.48498 * 109.46930 * 30.00386 * 16 14 12 19 19 H 1.48498 * 109.46976 * 150.00077 * 16 14 12 20 20 H 1.09007 * 109.46841 * 303.49029 * 1 2 3 21 21 H 1.09000 * 109.47650 * 63.48597 * 1 2 3 22 22 H 1.08995 * 109.47216 * 183.49053 * 1 2 3 23 23 H 1.08999 * 109.46750 * 240.00149 * 2 1 3 24 24 H 1.08994 * 109.46957 * 119.99801 * 2 1 3 25 25 H 1.09001 * 108.89679 * 96.79519 * 4 3 2 26 26 H 1.08997 * 108.80864 * 338.30916 * 4 3 2 27 27 H 1.09000 * 109.03156 * 198.33583 * 5 4 3 28 28 H 1.08998 * 109.03388 * 79.49409 * 5 4 3 29 29 H 1.09007 * 108.85526 * 198.11509 * 6 5 4 30 30 H 1.09001 * 108.85485 * 79.73413 * 6 5 4 31 31 H 1.08995 * 109.47338 * 297.46217 * 8 7 6 32 32 H 1.08997 * 109.47394 * 57.46952 * 8 7 6 33 33 H 1.09008 * 109.46722 * 177.46012 * 8 7 6 34 34 H 1.08994 * 108.94502 * 158.94301 * 9 7 6 35 35 H 1.08998 * 108.87404 * 40.26816 * 9 7 6 36 36 H 0.97003 * 119.99621 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5503 2.0982 -1.1628 5 6 2.6092 3.0670 -1.7297 6 6 3.3584 3.8150 -0.6070 7 7 2.4829 4.2372 0.4579 8 6 2.8793 5.5541 0.9743 9 6 2.4771 3.2237 1.5374 10 6 1.6008 2.0960 1.2297 11 1 0.5836 2.4643 1.0965 12 6 1.6233 1.1293 2.3856 13 1 2.0164 0.1327 2.2484 14 6 1.1421 1.5170 3.6181 15 7 1.1613 0.6731 4.6266 16 14 0.4629 3.2409 3.8554 17 1 1.5589 4.1515 4.2736 18 1 -0.1210 3.7230 2.5780 19 1 -0.5891 3.2185 4.9032 20 1 -0.3633 0.5671 0.8571 21 1 -0.3634 0.4588 -0.9196 22 1 -0.3633 -1.0257 0.0626 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 0.6609 2.6674 -0.8927 26 1 1.2847 1.3758 -1.9346 27 1 2.1162 3.7950 -2.3741 28 1 3.3287 2.5008 -2.3211 29 1 3.8448 4.6930 -1.0323 30 1 4.1229 3.1566 -0.1944 31 1 3.8807 5.4911 1.3999 32 1 2.8751 6.2797 0.1610 33 1 2.1759 5.8687 1.7454 34 1 2.1390 3.6928 2.4614 35 1 3.4926 2.8541 1.6795 36 1 0.8231 0.9461 5.4938 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218994741.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:49 Heat of formation + Delta-G solvation = 9.054945 kcal Electronic energy + Delta-G solvation = -15667.807902 eV Core-core repulsion = 13379.887628 eV Total energy + Delta-G solvation = -2287.920274 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.60829 -37.44926 -35.17122 -33.21747 -32.04949 -29.24066 -27.28829 -26.83197 -24.14633 -23.79018 -21.36065 -20.18514 -18.91106 -17.44964 -16.44417 -16.30315 -16.10552 -15.70859 -15.29634 -14.59859 -14.39096 -14.33073 -13.83514 -13.57853 -13.17337 -12.98431 -12.86921 -12.55716 -12.43626 -12.28018 -12.08297 -11.71764 -11.59408 -11.29690 -11.11695 -10.80832 -10.72500 -9.20530 -8.90342 -8.29031 -6.32454 1.22706 1.31236 1.41508 2.27671 2.96512 3.20367 3.31696 4.07490 4.17393 4.34595 4.39142 4.45756 4.48645 4.51139 4.60311 4.69821 4.75998 4.85473 4.90809 4.92275 4.96694 5.03608 5.13101 5.24603 5.31806 5.42742 5.43229 5.55964 5.65856 5.99728 6.23980 6.38285 6.45419 6.78392 6.85814 7.32545 8.85014 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025104 B = 0.016822 C = 0.011296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.091078 B = 1664.110733 C = 2478.072936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.061 3.939 3 N -0.530 5.530 4 C 0.062 3.938 5 C -0.096 4.096 6 C 0.064 3.936 7 N -0.556 5.556 8 C 0.025 3.975 9 C 0.076 3.924 10 C 0.198 3.802 11 H -0.008 1.008 12 C -0.510 4.510 13 H 0.063 0.937 14 C 0.022 3.978 15 N -0.940 5.940 16 Si 0.925 3.075 17 H -0.268 1.268 18 H -0.254 1.254 19 H -0.295 1.295 20 H 0.035 0.965 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.018 0.982 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.041 0.959 35 H 0.027 0.973 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.883 6.988 -11.651 13.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.067 4.067 3 N -0.254 5.254 4 C -0.067 4.067 5 C -0.135 4.135 6 C -0.065 4.065 7 N -0.280 5.280 8 C -0.123 4.123 9 C -0.051 4.051 10 C 0.090 3.910 11 H 0.010 0.990 12 C -0.549 4.549 13 H 0.081 0.919 14 C -0.176 4.176 15 N -0.581 5.581 16 Si 0.753 3.247 17 H -0.194 1.194 18 H -0.178 1.178 19 H -0.222 1.222 20 H 0.054 0.946 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.081 0.919 25 H 0.037 0.963 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.895 7.010 -11.691 13.762 hybrid contribution -0.501 0.401 1.334 1.481 sum 1.394 7.411 -10.356 12.810 Atomic orbital electron populations 1.22239 0.98328 1.01625 1.00714 1.22122 0.93095 0.90053 1.01393 1.61646 1.59436 1.02259 1.02042 1.21796 0.96323 0.96037 0.92577 1.21986 0.97929 0.97199 0.96352 1.21788 0.93456 0.98709 0.92519 1.61635 1.53354 1.02836 1.10218 1.22499 0.98512 0.90465 1.00834 1.21368 0.99261 0.92298 0.92168 1.18391 0.92387 0.91293 0.88953 0.99043 1.21528 1.39677 0.99945 0.93768 0.91925 1.25631 0.95952 1.00168 0.95844 1.69999 1.48701 1.37151 1.02239 0.86167 0.78460 0.81821 0.78279 1.19390 1.17804 1.22217 0.94579 0.92474 0.92233 0.90411 0.91949 0.96315 0.91407 0.90692 0.90742 0.90379 0.95577 0.95567 0.88909 0.92845 0.94061 0.95472 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.42 9.24 71.98 0.66 -5.76 16 2 C 0.06 2.40 5.37 86.30 0.46 2.87 16 3 N -0.53 -21.80 4.43 -889.00 -3.93 -25.74 16 4 C 0.06 2.11 4.17 87.24 0.36 2.47 16 5 C -0.10 -2.69 6.42 31.49 0.20 -2.49 16 6 C 0.06 1.98 5.28 87.26 0.46 2.44 16 7 N -0.56 -20.22 4.52 -936.63 -4.23 -24.45 16 8 C 0.02 0.74 9.24 127.69 1.18 1.92 16 9 C 0.08 3.41 4.04 83.95 0.34 3.74 16 10 C 0.20 9.42 0.75 41.82 0.03 9.45 16 11 H -0.01 -0.41 5.46 -2.38 -0.01 -0.42 16 12 C -0.51 -28.41 7.40 25.60 0.19 -28.22 16 13 H 0.06 3.80 5.55 -2.91 -0.02 3.79 16 14 C 0.02 1.28 5.45 84.65 0.46 1.74 16 15 N -0.94 -57.90 13.96 21.45 0.30 -57.60 16 16 Si 0.93 45.30 24.58 68.60 1.69 46.99 16 17 H -0.27 -12.52 6.91 99.48 0.69 -11.83 16 18 H -0.25 -12.14 6.39 99.48 0.64 -11.50 16 19 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 20 H 0.04 1.61 6.22 -2.38 -0.01 1.60 16 21 H 0.06 1.88 7.02 -2.39 -0.02 1.86 16 22 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 23 H 0.08 2.57 8.05 -2.39 -0.02 2.55 16 24 H 0.06 2.87 5.40 -2.39 -0.01 2.86 16 25 H 0.02 0.71 7.16 -2.39 -0.02 0.69 16 26 H 0.07 2.02 7.04 -2.39 -0.02 2.00 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.08 1.94 7.49 -2.38 -0.02 1.92 16 30 H 0.03 0.90 7.16 -2.39 -0.02 0.89 16 31 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 2.16 7.98 -2.39 -0.02 2.14 16 33 H 0.05 1.65 8.06 -2.38 -0.02 1.63 16 34 H 0.04 1.94 3.20 -2.39 -0.01 1.93 16 35 H 0.03 1.28 7.36 -2.39 -0.02 1.26 16 36 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -63.07 259.27 -0.87 -63.95 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.96 Total: 8.70 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 4.36 Total: -11.84 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -7.87 Total: -107.79 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.69 Total: 46.99 kcal Total: -63.07 -0.87 -63.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218994741.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.000 kcal (2) G-P(sol) polarization free energy of solvation -63.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds