Wall clock time and date at job start Mon Mar 30 2020 02:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.74389 * 2 1 4 4 C 1.54249 * 109.60526 * 239.57233 * 2 1 3 5 5 C 1.46134 * 111.89966 * 161.63220 * 4 2 1 6 6 N 1.48107 * 112.19073 * 60.86720 * 5 4 2 7 7 C 1.46899 * 111.00114 * 156.48113 * 6 5 4 8 8 C 1.44257 * 109.98855 * 279.71871 * 6 5 4 9 9 H 1.08997 * 108.86268 * 333.21003 * 8 6 5 10 10 C 1.50696 * 108.86896 * 214.68915 * 8 6 5 11 11 H 1.07995 * 119.99779 * 302.44060 * 10 8 6 12 12 C 1.37877 * 119.99936 * 122.43162 * 10 8 6 13 13 N 1.31512 * 119.99855 * 5.81239 * 12 10 8 14 14 Si 1.86803 * 119.99924 * 185.80997 * 12 10 8 15 15 H 1.48497 * 109.47054 * 59.99986 * 14 12 10 16 16 H 1.48500 * 109.46867 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47049 * 300.00170 * 14 12 10 18 18 C 1.53939 * 112.55199 * 93.89516 * 8 6 5 19 19 N 1.44250 * 109.60854 * 120.41981 * 2 1 3 20 20 C 1.46901 * 111.00034 * 339.59980 * 19 2 1 21 21 H 1.09007 * 109.47153 * 299.57719 * 1 2 3 22 22 H 1.09000 * 109.47175 * 59.57965 * 1 2 3 23 23 H 1.09000 * 109.47471 * 179.58343 * 1 2 3 24 24 H 1.09004 * 108.99897 * 282.25746 * 4 2 1 25 25 H 1.08994 * 108.99615 * 41.08969 * 4 2 1 26 26 H 1.09004 * 108.93686 * 181.56140 * 5 4 2 27 27 H 1.08998 * 108.94005 * 300.17258 * 5 4 2 28 28 H 1.08997 * 109.47287 * 66.78036 * 7 6 5 29 29 H 1.09000 * 109.47220 * 186.78274 * 7 6 5 30 30 H 1.08999 * 109.47050 * 306.77694 * 7 6 5 31 31 H 0.97003 * 119.99714 * 180.02562 * 13 12 10 32 32 H 1.09002 * 108.82013 * 197.53512 * 18 8 6 33 33 H 1.08993 * 108.82394 * 79.23684 * 18 8 6 34 34 H 1.08998 * 109.47262 * 59.99643 * 20 19 2 35 35 H 1.08995 * 109.47224 * 180.02562 * 20 19 2 36 36 H 1.09004 * 109.46942 * 299.99606 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0476 -0.7359 -1.2529 5 6 3.4427 -0.4089 -1.5398 6 7 4.3471 -0.7964 -0.4328 7 6 5.7204 -0.9886 -0.9176 8 6 4.3020 0.1974 0.6118 9 1 4.0307 1.1577 0.1731 10 6 5.6703 0.3149 1.2322 11 1 6.1433 -0.5541 1.6650 12 6 6.3183 1.5318 1.2470 13 7 5.6985 2.6120 0.8244 14 14 8.0766 1.6462 1.8675 15 1 8.9524 0.7834 1.0347 16 1 8.5412 3.0540 1.7814 17 1 8.1334 1.1921 3.2803 18 6 3.2841 -0.1496 1.7133 19 7 2.0141 -0.6880 1.1718 20 6 0.9799 -0.7453 2.2135 21 1 -0.3634 0.5073 0.8938 22 1 -0.3633 0.5203 -0.8862 23 1 -0.3634 -1.0276 -0.0075 24 1 1.9605 -1.8108 -1.0944 25 1 1.4349 -0.4531 -2.1089 26 1 3.7492 -0.9309 -2.4462 27 1 3.5273 0.6650 -1.7061 28 1 6.1267 -0.0322 -1.2466 29 1 6.3373 -1.3880 -0.1127 30 1 5.7160 -1.6883 -1.7534 31 1 6.1546 3.4681 0.8345 32 1 3.0676 0.7508 2.2883 33 1 3.7254 -0.8914 2.3788 34 1 0.1083 -1.2766 1.8313 35 1 1.3714 -1.2687 3.0857 36 1 0.6928 0.2674 2.4965 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218995023.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:40 Heat of formation + Delta-G solvation = 21.260116 kcal Electronic energy + Delta-G solvation = -15479.346573 eV Core-core repulsion = 13191.955555 eV Total energy + Delta-G solvation = -2287.391018 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.79201 -35.72373 -33.23460 -31.68023 -29.06497 -28.20532 -25.39275 -24.81770 -23.09988 -21.81792 -19.39612 -18.53767 -16.35338 -15.73965 -15.03484 -14.47345 -14.36459 -13.70901 -13.23381 -13.08888 -12.38428 -12.33670 -12.13939 -11.75265 -11.56279 -11.21223 -11.05863 -10.94833 -10.70089 -10.64219 -10.34234 -10.19380 -9.89980 -9.75460 -9.49675 -8.90053 -8.58487 -7.28855 -6.81732 -6.12618 -4.15327 3.26650 3.31675 3.34520 4.34277 4.66317 5.15508 5.31583 5.42157 5.50459 5.75464 5.83557 5.91061 6.07477 6.12755 6.23667 6.31118 6.37591 6.47651 6.53223 6.56376 6.65360 6.75195 6.79064 6.90713 7.04357 7.15570 7.33436 7.67835 7.76617 7.89455 8.01326 8.18031 8.57155 8.76486 9.03351 9.49431 10.95684 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038595 B = 0.010550 C = 0.009463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.309246 B = 2653.388203 C = 2958.131028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.093 3.907 3 H 0.044 0.956 4 C -0.097 4.097 5 C 0.055 3.945 6 N -0.526 5.526 7 C 0.062 3.938 8 C 0.190 3.810 9 H 0.046 0.954 10 C -0.515 4.515 11 H 0.061 0.939 12 C 0.066 3.934 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.275 1.275 18 C 0.091 3.909 19 N -0.546 5.546 20 C 0.030 3.970 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.023 0.977 28 H 0.019 0.981 29 H 0.067 0.933 30 H 0.026 0.974 31 H 0.263 0.737 32 H 0.018 0.982 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.822 -4.053 -2.001 8.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 H 0.062 0.938 4 C -0.136 4.136 5 C -0.073 4.073 6 N -0.251 5.251 7 C -0.086 4.086 8 C 0.082 3.918 9 H 0.063 0.937 10 C -0.554 4.554 11 H 0.079 0.921 12 C -0.137 4.137 13 N -0.531 5.531 14 Si 0.721 3.279 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.036 4.036 19 N -0.271 5.271 20 C -0.118 4.118 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -6.858 -4.736 -1.971 8.565 hybrid contribution 1.095 1.853 0.334 2.178 sum -5.764 -2.884 -1.637 6.650 Atomic orbital electron populations 1.22176 0.96166 1.01612 1.01177 1.21207 0.92739 0.96058 0.91579 0.93840 1.20558 0.95720 1.01595 0.95705 1.20997 0.94136 0.97868 0.94335 1.61817 1.06824 1.48107 1.08311 1.21944 0.90773 0.98109 0.97803 1.19286 0.93491 0.90222 0.88769 0.93653 1.21120 1.00995 0.94840 1.38435 0.92117 1.25018 0.98185 0.95751 0.94711 1.69910 1.37001 0.98994 1.47198 0.86627 0.84753 0.77009 0.79548 1.19955 1.21328 1.20045 1.22669 0.87057 0.95966 0.97952 1.60650 1.04101 1.57004 1.05387 1.22381 0.95568 0.98720 0.95160 0.92762 0.92955 0.92196 0.91149 0.93113 0.93276 0.95899 0.96208 0.91407 0.95524 0.92697 0.96370 0.92277 0.92040 0.92592 0.96800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 7.80 37.16 0.29 -1.94 16 2 C 0.09 1.73 2.55 -68.47 -0.17 1.56 16 3 H 0.04 0.93 6.96 -51.93 -0.36 0.57 16 4 C -0.10 -1.74 5.06 -29.34 -0.15 -1.89 16 5 C 0.05 1.11 5.01 -6.42 -0.03 1.08 16 6 N -0.53 -12.13 4.65 -240.80 -1.12 -13.25 16 7 C 0.06 1.38 8.43 60.06 0.51 1.88 16 8 C 0.19 4.81 2.06 -69.79 -0.14 4.66 16 9 H 0.05 1.30 5.30 -51.93 -0.28 1.02 16 10 C -0.51 -13.88 5.72 -34.44 -0.20 -14.07 16 11 H 0.06 1.64 7.17 -52.49 -0.38 1.27 16 12 C 0.07 1.81 5.45 -17.82 -0.10 1.72 16 13 N -0.89 -25.66 12.61 55.43 0.70 -24.96 16 14 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 C 0.09 2.11 5.11 -2.62 -0.01 2.09 16 19 N -0.55 -10.86 4.40 -234.41 -1.03 -11.89 16 20 C 0.03 0.49 8.26 60.07 0.50 0.99 16 21 H 0.05 0.76 6.40 -51.93 -0.33 0.43 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 0.81 7.35 -51.93 -0.38 0.43 16 24 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 25 H 0.05 0.78 8.00 -51.93 -0.42 0.36 16 26 H 0.05 0.91 7.69 -51.93 -0.40 0.51 16 27 H 0.02 0.51 7.38 -51.93 -0.38 0.13 16 28 H 0.02 0.47 7.87 -51.93 -0.41 0.06 16 29 H 0.07 1.55 6.57 -51.93 -0.34 1.21 16 30 H 0.03 0.51 7.89 -51.93 -0.41 0.10 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.02 0.44 8.04 -51.93 -0.42 0.03 16 33 H 0.06 1.40 7.97 -51.93 -0.41 0.99 16 34 H 0.06 0.88 6.28 -51.93 -0.33 0.56 16 35 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 36 H 0.01 0.22 7.37 -51.93 -0.38 -0.16 16 LS Contribution 268.89 15.07 4.05 4.05 Total: -1.00 -28.33 268.89 -7.96 -36.29 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -6.02 Total: -2.36 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 0.49 Total: -3.91 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: -1.45 Total: -50.10 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.33 -7.96 -36.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218995023.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.547 kcal (2) G-P(sol) polarization free energy of solvation -28.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds