Wall clock time and date at job start Mon Mar 30 2020 02:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.74389 * 2 1 4 4 C 1.54249 * 109.60526 * 239.57233 * 2 1 3 5 5 C 1.46134 * 111.89966 * 161.63220 * 4 2 1 6 6 N 1.48107 * 112.19073 * 60.86720 * 5 4 2 7 7 C 1.46899 * 111.00114 * 156.48113 * 6 5 4 8 8 C 1.44257 * 109.98855 * 279.71871 * 6 5 4 9 9 H 1.08997 * 108.86268 * 333.21003 * 8 6 5 10 10 C 1.50696 * 108.86896 * 214.68915 * 8 6 5 11 11 H 1.07995 * 119.99779 * 302.44060 * 10 8 6 12 12 C 1.37877 * 119.99936 * 122.43162 * 10 8 6 13 13 N 1.31512 * 119.99855 * 5.81239 * 12 10 8 14 14 Si 1.86803 * 119.99924 * 185.80997 * 12 10 8 15 15 H 1.48497 * 109.47054 * 59.99986 * 14 12 10 16 16 H 1.48500 * 109.46867 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47049 * 300.00170 * 14 12 10 18 18 C 1.53939 * 112.55199 * 93.89516 * 8 6 5 19 19 N 1.44250 * 109.60854 * 120.41981 * 2 1 3 20 20 C 1.46901 * 111.00034 * 339.59980 * 19 2 1 21 21 H 1.09007 * 109.47153 * 299.57719 * 1 2 3 22 22 H 1.09000 * 109.47175 * 59.57965 * 1 2 3 23 23 H 1.09000 * 109.47471 * 179.58343 * 1 2 3 24 24 H 1.09004 * 108.99897 * 282.25746 * 4 2 1 25 25 H 1.08994 * 108.99615 * 41.08969 * 4 2 1 26 26 H 1.09004 * 108.93686 * 181.56140 * 5 4 2 27 27 H 1.08998 * 108.94005 * 300.17258 * 5 4 2 28 28 H 1.08997 * 109.47287 * 66.78036 * 7 6 5 29 29 H 1.09000 * 109.47220 * 186.78274 * 7 6 5 30 30 H 1.08999 * 109.47050 * 306.77694 * 7 6 5 31 31 H 0.97003 * 119.99714 * 180.02562 * 13 12 10 32 32 H 1.09002 * 108.82013 * 197.53512 * 18 8 6 33 33 H 1.08993 * 108.82394 * 79.23684 * 18 8 6 34 34 H 1.08998 * 109.47262 * 59.99643 * 20 19 2 35 35 H 1.08995 * 109.47224 * 180.02562 * 20 19 2 36 36 H 1.09004 * 109.46942 * 299.99606 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8982 1.0259 0.0000 4 6 2.0476 -0.7359 -1.2529 5 6 3.4427 -0.4089 -1.5398 6 7 4.3471 -0.7964 -0.4328 7 6 5.7204 -0.9886 -0.9176 8 6 4.3020 0.1974 0.6118 9 1 4.0307 1.1577 0.1731 10 6 5.6703 0.3149 1.2322 11 1 6.1433 -0.5541 1.6650 12 6 6.3183 1.5318 1.2470 13 7 5.6985 2.6120 0.8244 14 14 8.0766 1.6462 1.8675 15 1 8.9524 0.7834 1.0347 16 1 8.5412 3.0540 1.7814 17 1 8.1334 1.1921 3.2803 18 6 3.2841 -0.1496 1.7133 19 7 2.0141 -0.6880 1.1718 20 6 0.9799 -0.7453 2.2135 21 1 -0.3634 0.5073 0.8938 22 1 -0.3633 0.5203 -0.8862 23 1 -0.3634 -1.0276 -0.0075 24 1 1.9605 -1.8108 -1.0944 25 1 1.4349 -0.4531 -2.1089 26 1 3.7492 -0.9309 -2.4462 27 1 3.5273 0.6650 -1.7061 28 1 6.1267 -0.0322 -1.2466 29 1 6.3373 -1.3880 -0.1127 30 1 5.7160 -1.6883 -1.7534 31 1 6.1546 3.4681 0.8345 32 1 3.0676 0.7508 2.2883 33 1 3.7254 -0.8914 2.3788 34 1 0.1083 -1.2766 1.8313 35 1 1.3714 -1.2687 3.0857 36 1 0.6928 0.2674 2.4965 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218995023.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:39 Heat of formation + Delta-G solvation = 1.129000 kcal Electronic energy + Delta-G solvation = -15480.219523 eV Core-core repulsion = 13191.955555 eV Total energy + Delta-G solvation = -2288.263969 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.44362 -37.42292 -35.08209 -33.51836 -30.66228 -29.86894 -27.11139 -26.58572 -24.83750 -23.46758 -21.10419 -20.24197 -18.42177 -17.31642 -16.91445 -16.07996 -15.95624 -15.59079 -14.90308 -14.69838 -14.21280 -14.00483 -13.58953 -13.37028 -13.11698 -12.82821 -12.74134 -12.61868 -12.52737 -12.18374 -12.11981 -11.84205 -11.58481 -11.35939 -11.25213 -10.92449 -10.67655 -8.94103 -8.69614 -8.23100 -6.32202 1.37639 1.38938 1.46994 2.35843 2.95733 3.25838 3.55717 3.97439 4.13654 4.37342 4.48886 4.55577 4.60088 4.68184 4.72887 4.75450 4.82196 4.94263 4.97906 5.02682 5.05631 5.12457 5.22339 5.25517 5.32119 5.42911 5.55917 5.59017 5.71199 5.95768 6.36254 6.56773 6.59864 6.86354 6.97184 7.36524 8.85382 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038595 B = 0.010550 C = 0.009463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.309246 B = 2653.388203 C = 2958.131028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.088 3.912 3 H 0.003 0.997 4 C -0.093 4.093 5 C 0.055 3.945 6 N -0.530 5.530 7 C 0.067 3.933 8 C 0.196 3.804 9 H 0.005 0.995 10 C -0.523 4.523 11 H 0.057 0.943 12 C 0.017 3.983 13 N -0.929 5.929 14 Si 0.956 3.044 15 H -0.265 1.265 16 H -0.286 1.286 17 H -0.268 1.268 18 C 0.102 3.898 19 N -0.550 5.550 20 C 0.029 3.971 21 H 0.057 0.943 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.072 0.928 27 H -0.005 1.005 28 H -0.008 1.008 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.263 0.737 32 H -0.007 1.007 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.746 -5.552 -2.423 9.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.021 4.021 3 H 0.021 0.979 4 C -0.131 4.131 5 C -0.072 4.072 6 N -0.254 5.254 7 C -0.081 4.081 8 C 0.088 3.912 9 H 0.023 0.977 10 C -0.562 4.562 11 H 0.075 0.925 12 C -0.182 4.182 13 N -0.568 5.568 14 Si 0.781 3.219 15 H -0.190 1.190 16 H -0.211 1.211 17 H -0.193 1.193 18 C -0.026 4.026 19 N -0.275 5.275 20 C -0.119 4.119 21 H 0.076 0.924 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.094 0.906 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.013 0.987 28 H 0.010 0.990 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.011 0.989 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -7.797 -6.256 -2.395 10.280 hybrid contribution 1.337 2.294 0.429 2.690 sum -6.460 -3.962 -1.966 7.830 Atomic orbital electron populations 1.22092 0.92479 1.03142 1.02376 1.21326 0.95694 0.93749 0.91375 0.97872 1.20554 0.94358 1.01614 0.96614 1.21112 0.95371 0.96398 0.94346 1.61859 1.07584 1.46931 1.09003 1.21907 0.90247 0.97386 0.98536 1.19099 0.93396 0.89082 0.89604 0.97691 1.21353 1.01927 0.94749 1.38206 0.92484 1.25786 1.02092 0.95332 0.95007 1.70056 1.38594 0.99445 1.48749 0.85633 0.79961 0.77054 0.79293 1.19021 1.21143 1.19275 1.22324 0.88827 0.94599 0.96812 1.60654 1.03777 1.56367 1.06665 1.22501 0.95567 0.99212 0.94590 0.92355 0.91158 0.90317 0.90650 0.89843 0.90921 0.98718 0.98956 0.92380 0.92034 0.92823 0.98861 0.93102 0.88916 0.92284 0.96832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 7.80 71.98 0.56 -3.15 16 2 C 0.09 3.16 2.55 45.83 0.12 3.27 16 3 H 0.00 0.14 6.96 -2.39 -0.02 0.12 16 4 C -0.09 -3.13 5.06 28.91 0.15 -2.98 16 5 C 0.06 2.22 5.01 83.96 0.42 2.64 16 6 N -0.53 -24.46 4.65 -915.75 -4.26 -28.72 16 7 C 0.07 2.99 8.43 127.69 1.08 4.07 16 8 C 0.20 10.27 2.06 44.98 0.09 10.36 16 9 H 0.01 0.31 5.30 -2.39 -0.01 0.30 16 10 C -0.52 -28.96 5.72 25.60 0.15 -28.81 16 11 H 0.06 3.14 7.17 -2.91 -0.02 3.12 16 12 C 0.02 0.96 5.45 84.66 0.46 1.42 16 13 N -0.93 -55.36 12.61 21.45 0.27 -55.09 16 14 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 15 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 16 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 C 0.10 4.89 5.11 86.37 0.44 5.33 16 19 N -0.55 -21.40 4.40 -895.55 -3.94 -25.34 16 20 C 0.03 0.90 8.26 127.69 1.05 1.95 16 21 H 0.06 1.47 6.40 -2.38 -0.02 1.45 16 22 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 23 H 0.08 1.77 7.35 -2.39 -0.02 1.76 16 24 H 0.07 2.51 8.12 -2.39 -0.02 2.49 16 25 H 0.08 2.28 8.00 -2.39 -0.02 2.26 16 26 H 0.07 2.54 7.69 -2.39 -0.02 2.52 16 27 H -0.01 -0.25 7.38 -2.39 -0.02 -0.27 16 28 H -0.01 -0.41 7.87 -2.39 -0.02 -0.43 16 29 H 0.06 2.65 6.57 -2.39 -0.02 2.63 16 30 H 0.06 2.27 7.89 -2.39 -0.02 2.25 16 31 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 32 H -0.01 -0.35 8.04 -2.39 -0.02 -0.37 16 33 H 0.05 2.46 7.97 -2.39 -0.02 2.44 16 34 H 0.09 2.32 6.28 -2.39 -0.01 2.31 16 35 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 36 H 0.01 0.42 7.37 -2.39 -0.02 0.40 16 Total: -1.00 -62.85 268.89 -0.35 -63.20 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 1.03 Total: 6.03 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 4.52 Total: -5.90 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -7.93 Total: -109.16 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -62.85 -0.35 -63.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218995023.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.327 kcal (2) G-P(sol) polarization free energy of solvation -62.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds