Wall clock time and date at job start Mon Mar 30 2020 02:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.63329 * 2 1 4 4 C 1.50800 * 109.63229 * 120.40041 * 2 1 3 5 5 C 1.53691 * 112.10028 * 212.25324 * 4 2 1 6 6 N 1.48072 * 112.47093 * 318.55421 * 5 4 2 7 7 C 1.46891 * 111.00163 * 192.19666 * 6 5 4 8 8 C 1.44580 * 113.85716 * 318.31834 * 6 5 4 9 9 H 1.09002 * 109.57457 * 334.28595 * 8 6 5 10 10 C 1.50694 * 109.57371 * 214.03497 * 8 6 5 11 11 H 1.07996 * 120.00284 * 275.65996 * 10 8 6 12 12 C 1.37877 * 120.00152 * 95.66104 * 10 8 6 13 13 N 1.31521 * 119.99922 * 354.06808 * 12 10 8 14 14 Si 1.86799 * 120.00179 * 174.06803 * 12 10 8 15 15 H 1.48503 * 109.46952 * 179.97438 * 14 12 10 16 16 H 1.48496 * 109.47152 * 300.00138 * 14 12 10 17 17 H 1.48500 * 109.47138 * 60.00277 * 14 12 10 18 18 C 1.54205 * 108.95651 * 94.15709 * 8 6 5 19 19 N 1.39919 * 112.13703 * 281.39076 * 18 8 6 20 20 C 1.46895 * 110.99644 * 187.97758 * 19 18 8 21 21 H 1.09000 * 109.46908 * 299.60348 * 1 2 3 22 22 H 1.09004 * 109.46752 * 59.60062 * 1 2 3 23 23 H 1.08998 * 109.47486 * 179.59525 * 1 2 3 24 24 H 1.09004 * 108.95112 * 91.57580 * 4 2 1 25 25 H 1.08996 * 108.88258 * 332.88296 * 4 2 1 26 26 H 1.08995 * 108.88071 * 197.78723 * 5 4 2 27 27 H 1.08999 * 108.88714 * 79.32089 * 5 4 2 28 28 H 1.08996 * 109.47270 * 192.39401 * 7 6 5 29 29 H 1.09003 * 109.47185 * 312.40074 * 7 6 5 30 30 H 1.09007 * 109.47106 * 72.39667 * 7 6 5 31 31 H 0.96998 * 119.99721 * 354.55074 * 13 12 10 32 32 H 1.09003 * 108.96001 * 41.93288 * 18 8 6 33 33 H 1.09012 * 108.95766 * 160.58547 * 18 8 6 34 34 H 1.09003 * 109.47341 * 291.89378 * 20 19 18 35 35 H 1.09001 * 109.47815 * 51.89560 * 20 19 18 36 36 H 1.09004 * 109.47307 * 171.89808 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8963 1.0266 0.0000 4 6 2.0367 -0.7187 1.2251 5 6 3.3652 -0.1341 1.7304 6 7 4.2978 0.1887 0.6264 7 6 5.6454 0.4674 1.1402 8 6 4.3376 -0.8115 -0.4168 9 1 4.0496 -1.7792 -0.0061 10 6 5.7323 -0.8973 -0.9810 11 1 6.0445 -0.2127 -1.7557 12 6 6.6098 -1.8498 -0.5082 13 7 6.2718 -2.6060 0.5134 14 14 8.2789 -2.0664 -1.3185 15 1 9.0281 -3.1466 -0.6277 16 1 8.0926 -2.4277 -2.7468 17 1 9.0432 -0.7966 -1.2248 18 6 3.3523 -0.4104 -1.5332 19 7 2.0269 -0.7092 -1.1991 20 6 1.1339 -0.4944 -2.3456 21 1 -0.3633 0.5077 0.8935 22 1 -0.3633 0.5201 -0.8864 23 1 -0.3634 -1.0276 -0.0073 24 1 2.1823 -1.7715 0.9829 25 1 1.2906 -0.6375 2.0155 26 1 3.8399 -0.8580 2.3927 27 1 3.1586 0.7752 2.2948 28 1 6.2509 0.9112 0.3500 29 1 5.5784 1.1600 1.9792 30 1 6.1070 -0.4625 1.4727 31 1 5.4397 -2.4417 0.9840 32 1 3.4370 0.6616 -1.7119 33 1 3.6173 -0.9421 -2.4472 34 1 1.0778 0.5712 -2.5679 35 1 1.5226 -1.0267 -3.2137 36 1 0.1385 -0.8684 -2.1058 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218995105.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:42 Heat of formation + Delta-G solvation = 16.497402 kcal Electronic energy + Delta-G solvation = -15577.405973 eV Core-core repulsion = 13289.808428 eV Total energy + Delta-G solvation = -2287.597545 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.05216 -35.89060 -33.32964 -31.76149 -29.06814 -28.12969 -25.37702 -24.41963 -22.93159 -22.29800 -19.51225 -19.03938 -16.64044 -15.31652 -15.19990 -14.81605 -14.14252 -13.77180 -13.37428 -13.19930 -12.78000 -12.46183 -12.09458 -11.78766 -11.66215 -11.33811 -11.19371 -10.77648 -10.71984 -10.45150 -10.34183 -10.14266 -10.02343 -9.87311 -9.67017 -8.49808 -8.41762 -7.48428 -6.90788 -6.40636 -4.11455 3.41622 3.42726 3.61731 4.45377 4.60798 5.03616 5.31508 5.37737 5.45127 5.70499 5.73008 5.82849 5.90712 6.00151 6.09052 6.10328 6.23583 6.35938 6.43385 6.51670 6.55913 6.58550 6.64527 6.87504 6.88391 7.09862 7.34438 7.40738 7.80892 7.83238 8.14831 8.38081 8.59111 8.69814 8.87887 9.58690 10.95199 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.040895 B = 0.010692 C = 0.009374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.511767 B = 2618.235641 C = 2986.408917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.098 3.902 3 H 0.051 0.949 4 C -0.111 4.111 5 C 0.060 3.940 6 N -0.560 5.560 7 C 0.060 3.940 8 C 0.200 3.800 9 H 0.027 0.973 10 C -0.589 4.589 11 H 0.051 0.949 12 C 0.025 3.975 13 N -0.905 5.905 14 Si 1.065 2.935 15 H -0.283 1.283 16 H -0.287 1.287 17 H -0.287 1.287 18 C 0.090 3.910 19 N -0.552 5.552 20 C 0.030 3.970 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.021 0.979 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.020 0.980 30 H 0.039 0.961 31 H 0.269 0.731 32 H 0.009 0.991 33 H 0.062 0.938 34 H 0.016 0.984 35 H 0.059 0.941 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.037 4.367 -0.555 9.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 H 0.069 0.931 4 C -0.149 4.149 5 C -0.068 4.068 6 N -0.286 5.286 7 C -0.088 4.088 8 C 0.094 3.906 9 H 0.045 0.955 10 C -0.629 4.629 11 H 0.069 0.931 12 C -0.180 4.180 13 N -0.541 5.541 14 Si 0.893 3.107 15 H -0.208 1.208 16 H -0.213 1.213 17 H -0.214 1.214 18 C -0.039 4.039 19 N -0.276 5.276 20 C -0.118 4.118 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.027 0.973 33 H 0.080 0.920 34 H 0.034 0.966 35 H 0.078 0.922 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.835 3.367 -0.629 7.645 hybrid contribution -1.065 1.100 0.129 1.537 sum -7.900 4.467 -0.500 9.089 Atomic orbital electron populations 1.22086 0.95713 1.01822 1.01132 1.21162 0.92997 0.96322 0.90414 0.93054 1.21433 0.96033 1.01160 0.96276 1.22267 0.93081 0.97684 0.93743 1.61296 1.08498 1.48008 1.10802 1.21929 0.90355 0.99323 0.97186 1.19212 0.93928 0.89803 0.87672 0.95503 1.21884 0.97289 1.20136 1.23581 0.93058 1.25836 1.03690 0.92710 0.95776 1.70820 1.25377 1.38893 1.19019 0.83600 0.75076 0.76333 0.75682 1.20821 1.21336 1.21360 1.21048 0.86171 0.97150 0.99567 1.59334 1.03614 1.60425 1.04275 1.22354 0.97409 0.98363 0.93665 0.92679 0.92805 0.92213 0.91192 0.92304 0.96043 0.93259 0.91663 0.96150 0.94266 0.91888 0.97327 0.91957 0.96594 0.92235 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 7.78 37.16 0.29 -1.78 16 2 C 0.10 1.74 2.43 -68.26 -0.17 1.58 16 3 H 0.05 1.00 7.59 -51.93 -0.39 0.60 16 4 C -0.11 -2.03 4.92 -27.48 -0.14 -2.17 16 5 C 0.06 1.23 5.43 -2.82 -0.02 1.22 16 6 N -0.56 -13.09 4.20 -235.89 -0.99 -14.08 16 7 C 0.06 1.42 8.40 60.06 0.50 1.92 16 8 C 0.20 5.06 1.75 -69.48 -0.12 4.94 16 9 H 0.03 0.77 5.38 -51.93 -0.28 0.49 16 10 C -0.59 -16.11 5.99 -34.44 -0.21 -16.32 16 11 H 0.05 1.42 7.82 -52.49 -0.41 1.01 16 12 C 0.03 0.70 4.51 -17.82 -0.08 0.62 16 13 N -0.90 -26.63 12.70 55.43 0.70 -25.92 16 14 Si 1.07 24.73 29.91 -169.99 -5.08 19.65 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 18 C 0.09 2.05 4.43 -6.80 -0.03 2.02 16 19 N -0.55 -10.79 4.28 -240.08 -1.03 -11.81 16 20 C 0.03 0.48 8.37 60.06 0.50 0.98 16 21 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 22 H 0.05 0.69 6.56 -51.93 -0.34 0.34 16 23 H 0.06 0.81 7.99 -51.93 -0.41 0.39 16 24 H 0.07 1.44 7.23 -51.93 -0.38 1.06 16 25 H 0.06 0.91 7.70 -51.93 -0.40 0.51 16 26 H 0.02 0.46 8.03 -51.93 -0.42 0.05 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.60 7.06 -51.93 -0.37 1.23 16 29 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 30 H 0.04 1.02 5.66 -51.93 -0.29 0.73 16 31 H 0.27 8.03 6.26 -40.82 -0.26 7.78 16 32 H 0.01 0.20 8.08 -51.93 -0.42 -0.22 16 33 H 0.06 1.45 7.69 -51.92 -0.40 1.05 16 34 H 0.02 0.24 8.05 -51.93 -0.42 -0.18 16 35 H 0.06 0.92 7.89 -51.93 -0.41 0.51 16 36 H 0.06 0.88 6.34 -51.93 -0.33 0.55 16 LS Contribution 266.04 15.07 4.01 4.01 Total: -1.00 -28.90 266.04 -7.83 -36.73 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -5.98 Total: -1.59 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: 0.54 Total: -6.99 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -1.31 Total: -51.81 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.08 Total: 19.65 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.90 -7.83 -36.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218995105.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.226 kcal (2) G-P(sol) polarization free energy of solvation -28.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds