Wall clock time and date at job start Mon Mar 30 2020 02:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.05788 * 2 1 4 4 C 1.54513 * 109.07068 * 240.97232 * 2 1 3 5 5 C 1.50748 * 108.94136 * 163.46450 * 4 2 1 6 6 N 1.48070 * 112.93563 * 92.65314 * 5 4 2 7 7 C 1.46896 * 111.00381 * 84.35208 * 6 5 4 8 8 C 1.47751 * 113.78657 * 318.28101 * 6 5 4 9 9 C 1.50775 * 111.91228 * 318.88164 * 8 6 5 10 10 H 1.08993 * 109.73651 * 334.95283 * 9 8 6 11 11 C 1.50704 * 109.73220 * 214.25965 * 9 8 6 12 12 H 1.08002 * 120.00272 * 297.97419 * 11 9 8 13 13 C 1.37878 * 119.99769 * 117.97286 * 11 9 8 14 14 N 1.31513 * 120.00501 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99863 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46804 * 90.00397 * 15 13 11 17 17 H 1.48499 * 109.47100 * 210.00055 * 15 13 11 18 18 H 1.48497 * 109.47427 * 330.00403 * 15 13 11 19 19 N 1.40083 * 109.07348 * 118.96058 * 2 1 3 20 20 C 1.46894 * 111.00197 * 308.67460 * 19 2 1 21 21 H 1.08995 * 109.47400 * 179.03066 * 1 2 3 22 22 H 1.09003 * 109.47105 * 299.02970 * 1 2 3 23 23 H 1.09004 * 109.47615 * 59.02601 * 1 2 3 24 24 H 1.09001 * 109.56284 * 43.62901 * 4 2 1 25 25 H 1.09005 * 109.55799 * 283.30486 * 4 2 1 26 26 H 1.08998 * 108.79193 * 331.76143 * 5 4 2 27 27 H 1.08997 * 108.79192 * 213.54393 * 5 4 2 28 28 H 1.09006 * 109.46854 * 292.39979 * 7 6 5 29 29 H 1.08999 * 109.46963 * 52.39623 * 7 6 5 30 30 H 1.08996 * 109.47308 * 172.39829 * 7 6 5 31 31 H 1.09004 * 108.98976 * 79.50598 * 8 6 5 32 32 H 1.08999 * 108.99270 * 198.24804 * 8 6 5 33 33 H 0.96995 * 120.00492 * 179.97438 * 14 13 11 34 34 H 1.08994 * 109.47494 * 62.79105 * 20 19 2 35 35 H 1.08996 * 109.46928 * 182.79032 * 20 19 2 36 36 H 1.09001 * 109.46726 * 302.78729 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8859 1.0303 0.0000 4 6 2.0348 -0.7086 -1.2769 5 6 3.4866 -0.3615 -1.4877 6 7 4.4096 -1.3445 -0.8761 7 6 4.6357 -2.4844 -1.7747 8 6 3.9898 -1.8023 0.4646 9 6 3.4570 -0.6693 1.3047 10 1 3.8795 0.2746 0.9603 11 6 3.8203 -0.8931 2.7500 12 1 3.4480 -1.7622 3.2721 13 6 4.6279 0.0117 3.4059 14 7 5.0808 1.0702 2.7704 15 14 5.0776 -0.2653 5.1977 16 1 6.3284 -1.0618 5.2766 17 1 5.2825 1.0454 5.8650 18 1 3.9794 -0.9998 5.8759 19 7 1.9878 -0.6411 1.1584 20 6 1.3499 -0.0808 2.3571 21 1 -0.3634 -1.0275 -0.0174 22 1 -0.3633 0.4987 0.8986 23 1 -0.3634 0.5289 -0.8811 24 1 1.4515 -0.3742 -2.1348 25 1 1.9307 -1.7874 -1.1609 26 1 3.6798 0.6192 -1.0529 27 1 3.6842 -0.3133 -2.5585 28 1 3.7137 -3.0573 -1.8739 29 1 4.9437 -2.1191 -2.7544 30 1 5.4174 -3.1224 -1.3626 31 1 3.2122 -2.5580 0.3539 32 1 4.8458 -2.2478 0.9714 33 1 5.6487 1.7069 3.2320 34 1 0.2750 -0.2557 2.3122 35 1 1.7594 -0.5622 3.2452 36 1 1.5421 0.9911 2.4036 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218995393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:22 Heat of formation + Delta-G solvation = 20.372028 kcal Electronic energy + Delta-G solvation = -15540.996121 eV Core-core repulsion = 13253.566593 eV Total energy + Delta-G solvation = -2287.429528 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.02988 -35.48065 -33.49436 -31.30468 -29.18408 -27.77969 -25.59496 -25.12157 -23.11003 -21.87925 -19.22855 -18.77649 -16.45763 -15.45759 -15.06467 -14.53478 -14.29642 -14.02777 -13.52699 -12.82853 -12.51886 -12.23817 -11.80568 -11.53278 -11.44326 -11.37784 -11.19339 -11.08297 -10.83778 -10.67503 -10.49766 -10.23775 -10.05710 -9.51150 -9.36085 -8.99948 -8.55778 -7.37514 -6.88281 -6.05935 -4.09692 3.28486 3.35678 3.38497 4.37273 4.75707 5.01493 5.30534 5.38757 5.57933 5.72743 5.87077 5.95085 6.02417 6.04425 6.21840 6.28924 6.30901 6.33611 6.50761 6.57754 6.63114 6.70330 6.78409 6.86479 6.97144 7.15241 7.39454 7.66030 7.82690 7.88588 8.03288 8.14329 8.45875 8.93019 9.06717 9.53768 11.01743 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029875 B = 0.012374 C = 0.009788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.025569 B = 2262.254773 C = 2859.898940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.105 3.895 3 H 0.016 0.984 4 C -0.139 4.139 5 C 0.060 3.940 6 N -0.552 5.552 7 C 0.031 3.969 8 C 0.080 3.920 9 C 0.199 3.801 10 H 0.061 0.939 11 C -0.508 4.508 12 H 0.059 0.941 13 C 0.069 3.931 14 N -0.885 5.885 15 Si 0.893 3.107 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.272 1.272 19 N -0.565 5.565 20 C 0.051 3.949 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.053 0.947 28 H 0.014 0.986 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.022 0.978 32 H 0.069 0.931 33 H 0.263 0.737 34 H 0.035 0.965 35 H 0.084 0.916 36 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.969 -2.607 -6.004 8.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.007 4.007 3 H 0.034 0.966 4 C -0.178 4.178 5 C -0.068 4.068 6 N -0.276 5.276 7 C -0.117 4.117 8 C -0.047 4.047 9 C 0.095 3.905 10 H 0.079 0.921 11 C -0.547 4.547 12 H 0.077 0.923 13 C -0.135 4.135 14 N -0.523 5.523 15 Si 0.721 3.279 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.197 1.197 19 N -0.291 5.291 20 C -0.097 4.097 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.033 0.967 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.053 0.947 35 H 0.102 0.898 36 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -4.544 -2.653 -5.974 7.961 hybrid contribution -0.229 0.314 0.824 0.911 sum -4.773 -2.339 -5.151 7.402 Atomic orbital electron populations 1.22075 0.96370 1.01416 1.00698 1.20393 0.93761 0.94871 0.91633 0.96605 1.22049 0.97339 1.01342 0.97114 1.21870 0.89904 0.97359 0.97679 1.62233 1.47643 1.14225 1.03504 1.22286 0.99305 0.93612 0.96538 1.22222 0.98041 0.98356 0.86088 1.19243 0.80979 0.95641 0.94646 0.92092 1.20880 1.30087 1.08289 0.95459 0.92272 1.24998 0.95532 0.94820 0.98160 1.69915 1.33863 1.11892 1.36607 0.86580 0.79011 0.77506 0.84834 1.20495 1.21270 1.19719 1.59378 1.11992 1.56813 1.00898 1.22092 0.95676 0.96836 0.95078 0.92683 0.92530 0.93700 0.92274 0.91625 0.91105 0.92796 0.96709 0.92676 0.92143 0.95982 0.91269 0.92757 0.94663 0.89751 0.97253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.57 37.16 0.32 -2.10 16 2 C 0.10 2.05 2.07 -70.44 -0.15 1.91 16 3 H 0.02 0.35 7.59 -51.93 -0.39 -0.04 16 4 C -0.14 -2.46 4.99 -27.07 -0.13 -2.60 16 5 C 0.06 1.13 5.15 -4.31 -0.02 1.10 16 6 N -0.55 -11.33 4.99 -243.98 -1.22 -12.55 16 7 C 0.03 0.52 9.44 60.06 0.57 1.09 16 8 C 0.08 1.83 4.66 -4.47 -0.02 1.81 16 9 C 0.20 4.99 2.17 -69.55 -0.15 4.84 16 10 H 0.06 1.75 5.57 -51.93 -0.29 1.46 16 11 C -0.51 -13.61 5.67 -34.44 -0.20 -13.81 16 12 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 13 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 14 N -0.89 -25.49 12.62 55.43 0.70 -24.79 16 15 Si 0.89 20.99 29.54 -169.99 -5.02 15.96 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 N -0.57 -12.64 4.04 -233.05 -0.94 -13.58 16 20 C 0.05 1.11 8.32 60.06 0.50 1.61 16 21 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 22 H 0.06 0.92 6.05 -51.93 -0.31 0.61 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.89 8.04 -51.93 -0.42 0.48 16 25 H 0.07 1.22 6.76 -51.93 -0.35 0.87 16 26 H 0.07 1.50 6.52 -51.93 -0.34 1.16 16 27 H 0.05 0.88 7.69 -51.93 -0.40 0.48 16 28 H 0.01 0.23 7.74 -51.93 -0.40 -0.17 16 29 H 0.05 0.80 7.86 -51.93 -0.41 0.40 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.02 0.50 7.05 -51.93 -0.37 0.13 16 32 H 0.07 1.68 7.71 -51.93 -0.40 1.28 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.03 0.66 6.13 -51.93 -0.32 0.35 16 35 H 0.08 1.97 5.98 -51.93 -0.31 1.66 16 36 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 LS Contribution 268.17 15.07 4.04 4.04 Total: -1.00 -28.15 268.17 -7.75 -35.90 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.93 Total: -0.62 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 0.62 Total: -4.37 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -1.46 Total: -50.92 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -28.15 -7.75 -35.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218995393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.273 kcal (2) G-P(sol) polarization free energy of solvation -28.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds