Wall clock time and date at job start Mon Mar 30 2020 02:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.05788 * 2 1 4 4 C 1.54513 * 109.07068 * 240.97232 * 2 1 3 5 5 C 1.50748 * 108.94136 * 163.46450 * 4 2 1 6 6 N 1.48070 * 112.93563 * 92.65314 * 5 4 2 7 7 C 1.46896 * 111.00381 * 84.35208 * 6 5 4 8 8 C 1.47751 * 113.78657 * 318.28101 * 6 5 4 9 9 C 1.50775 * 111.91228 * 318.88164 * 8 6 5 10 10 H 1.08993 * 109.73651 * 334.95283 * 9 8 6 11 11 C 1.50704 * 109.73220 * 214.25965 * 9 8 6 12 12 H 1.08002 * 120.00272 * 297.97419 * 11 9 8 13 13 C 1.37878 * 119.99769 * 117.97286 * 11 9 8 14 14 N 1.31513 * 120.00501 * 0.02562 * 13 11 9 15 15 Si 1.86803 * 119.99863 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46804 * 90.00397 * 15 13 11 17 17 H 1.48499 * 109.47100 * 210.00055 * 15 13 11 18 18 H 1.48497 * 109.47427 * 330.00403 * 15 13 11 19 19 N 1.40083 * 109.07348 * 118.96058 * 2 1 3 20 20 C 1.46894 * 111.00197 * 308.67460 * 19 2 1 21 21 H 1.08995 * 109.47400 * 179.03066 * 1 2 3 22 22 H 1.09003 * 109.47105 * 299.02970 * 1 2 3 23 23 H 1.09004 * 109.47615 * 59.02601 * 1 2 3 24 24 H 1.09001 * 109.56284 * 43.62901 * 4 2 1 25 25 H 1.09005 * 109.55799 * 283.30486 * 4 2 1 26 26 H 1.08998 * 108.79193 * 331.76143 * 5 4 2 27 27 H 1.08997 * 108.79192 * 213.54393 * 5 4 2 28 28 H 1.09006 * 109.46854 * 292.39979 * 7 6 5 29 29 H 1.08999 * 109.46963 * 52.39623 * 7 6 5 30 30 H 1.08996 * 109.47308 * 172.39829 * 7 6 5 31 31 H 1.09004 * 108.98976 * 79.50598 * 8 6 5 32 32 H 1.08999 * 108.99270 * 198.24804 * 8 6 5 33 33 H 0.96995 * 120.00492 * 179.97438 * 14 13 11 34 34 H 1.08994 * 109.47494 * 62.79105 * 20 19 2 35 35 H 1.08996 * 109.46928 * 182.79032 * 20 19 2 36 36 H 1.09001 * 109.46726 * 302.78729 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8859 1.0303 0.0000 4 6 2.0348 -0.7086 -1.2769 5 6 3.4866 -0.3615 -1.4877 6 7 4.4096 -1.3445 -0.8761 7 6 4.6357 -2.4844 -1.7747 8 6 3.9898 -1.8023 0.4646 9 6 3.4570 -0.6693 1.3047 10 1 3.8795 0.2746 0.9603 11 6 3.8203 -0.8931 2.7500 12 1 3.4480 -1.7622 3.2721 13 6 4.6279 0.0117 3.4059 14 7 5.0808 1.0702 2.7704 15 14 5.0776 -0.2653 5.1977 16 1 6.3284 -1.0618 5.2766 17 1 5.2825 1.0454 5.8650 18 1 3.9794 -0.9998 5.8759 19 7 1.9878 -0.6411 1.1584 20 6 1.3499 -0.0808 2.3571 21 1 -0.3634 -1.0275 -0.0174 22 1 -0.3633 0.4987 0.8986 23 1 -0.3634 0.5289 -0.8811 24 1 1.4515 -0.3742 -2.1348 25 1 1.9307 -1.7874 -1.1609 26 1 3.6798 0.6192 -1.0529 27 1 3.6842 -0.3133 -2.5585 28 1 3.7137 -3.0573 -1.8739 29 1 4.9437 -2.1191 -2.7544 30 1 5.4174 -3.1224 -1.3626 31 1 3.2122 -2.5580 0.3539 32 1 4.8458 -2.2478 0.9714 33 1 5.6487 1.7069 3.2320 34 1 0.2750 -0.2557 2.3122 35 1 1.7594 -0.5622 3.2452 36 1 1.5421 0.9911 2.4036 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218995393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:21 Heat of formation + Delta-G solvation = 0.347340 kcal Electronic energy + Delta-G solvation = -15541.864457 eV Core-core repulsion = 13253.566593 eV Total energy + Delta-G solvation = -2288.297864 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.70597 -37.09200 -35.39852 -33.15166 -30.78338 -29.37424 -27.53871 -26.66796 -24.76751 -23.60597 -20.82051 -20.56441 -18.50700 -17.05244 -16.94946 -16.17845 -16.00717 -15.70699 -15.13120 -14.47964 -14.14986 -13.87277 -13.28927 -13.20844 -13.08055 -12.99292 -12.87258 -12.77012 -12.56922 -12.30708 -12.15376 -12.01538 -11.67630 -11.34956 -10.99807 -10.98322 -10.64225 -8.95833 -8.74392 -8.15233 -6.25025 1.40861 1.41621 1.52234 2.40000 3.06446 3.20917 3.54408 3.88476 4.10587 4.25970 4.44475 4.56130 4.65054 4.67204 4.69423 4.76271 4.85179 4.88269 4.96639 4.97769 5.02912 5.08163 5.15085 5.26860 5.32554 5.43617 5.50444 5.64900 5.77672 6.09042 6.35868 6.42430 6.51950 6.98812 7.11893 7.42357 8.92608 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029875 B = 0.012374 C = 0.009788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.025569 B = 2262.254773 C = 2859.898940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.094 3.906 3 H -0.012 1.012 4 C -0.128 4.128 5 C 0.061 3.939 6 N -0.575 5.575 7 C 0.034 3.966 8 C 0.095 3.905 9 C 0.202 3.798 10 H 0.020 0.980 11 C -0.515 4.515 12 H 0.055 0.945 13 C 0.019 3.981 14 N -0.924 5.924 15 Si 0.956 3.044 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.263 1.263 19 N -0.562 5.562 20 C 0.057 3.943 21 H 0.063 0.937 22 H 0.053 0.947 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.062 0.938 26 H 0.035 0.965 27 H 0.086 0.914 28 H 0.025 0.975 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.025 0.975 32 H 0.046 0.954 33 H 0.262 0.738 34 H 0.070 0.930 35 H 0.064 0.936 36 H -0.014 1.014 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.194 -3.650 -6.961 10.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.017 4.017 3 H 0.005 0.995 4 C -0.167 4.167 5 C -0.066 4.066 6 N -0.300 5.300 7 C -0.114 4.114 8 C -0.033 4.033 9 C 0.097 3.903 10 H 0.038 0.962 11 C -0.554 4.554 12 H 0.073 0.927 13 C -0.181 4.181 14 N -0.563 5.563 15 Si 0.782 3.218 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.187 1.187 19 N -0.288 5.288 20 C -0.091 4.091 21 H 0.082 0.918 22 H 0.072 0.928 23 H 0.091 0.909 24 H 0.113 0.887 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.044 0.956 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.004 0.996 Dipole moment (debyes) X Y Z Total from point charges -5.786 -3.713 -6.945 9.772 hybrid contribution 0.136 0.650 1.049 1.242 sum -5.650 -3.062 -5.895 8.721 Atomic orbital electron populations 1.21976 0.93203 1.02360 1.02007 1.20610 0.96308 0.93312 0.91491 0.99474 1.21983 0.96763 1.00761 0.97190 1.21861 0.90591 0.95219 0.98938 1.62076 1.48464 1.16098 1.03337 1.22343 0.99914 0.92464 0.96714 1.21844 0.96874 0.97215 0.87376 1.19059 0.82689 0.94418 0.94176 0.96234 1.21128 1.29775 1.07934 0.96534 0.92651 1.25752 0.95579 0.94531 1.02225 1.70066 1.34970 1.12962 1.38272 0.85581 0.78932 0.77401 0.79930 1.20027 1.21150 1.18682 1.59432 1.10236 1.57020 1.02078 1.22049 0.97620 0.95019 0.94373 0.91803 0.92780 0.90938 0.88710 0.91932 0.94603 0.89591 0.95645 0.90195 0.91965 0.95689 0.93577 0.92928 0.91160 0.91683 0.99554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 8.57 71.98 0.62 -3.50 16 2 C 0.09 3.58 2.07 46.66 0.10 3.68 16 3 H -0.01 -0.55 7.59 -2.38 -0.02 -0.57 16 4 C -0.13 -4.22 4.99 30.38 0.15 -4.07 16 5 C 0.06 2.25 5.15 85.35 0.44 2.69 16 6 N -0.57 -23.28 4.99 -925.81 -4.62 -27.90 16 7 C 0.03 1.04 9.44 127.69 1.21 2.24 16 8 C 0.09 4.38 4.66 85.42 0.40 4.78 16 9 C 0.20 10.40 2.17 43.30 0.09 10.50 16 10 H 0.02 1.18 5.57 -2.39 -0.01 1.17 16 11 C -0.51 -28.27 5.67 25.60 0.15 -28.13 16 12 H 0.06 3.02 7.62 -2.91 -0.02 3.00 16 13 C 0.02 1.06 5.46 84.65 0.46 1.52 16 14 N -0.92 -55.14 12.62 21.45 0.27 -54.87 16 15 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 16 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 17 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 18 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 19 N -0.56 -25.17 4.04 -891.24 -3.60 -28.76 16 20 C 0.06 2.50 8.32 127.69 1.06 3.56 16 21 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.05 1.62 6.05 -2.39 -0.01 1.61 16 23 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.09 2.47 8.04 -2.39 -0.02 2.45 16 25 H 0.06 2.14 6.76 -2.38 -0.02 2.13 16 26 H 0.04 1.55 6.52 -2.39 -0.02 1.54 16 27 H 0.09 2.56 7.69 -2.39 -0.02 2.54 16 28 H 0.03 0.73 7.74 -2.38 -0.02 0.72 16 29 H 0.08 2.07 7.86 -2.39 -0.02 2.05 16 30 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.02 1.12 7.05 -2.38 -0.02 1.10 16 32 H 0.05 2.29 7.71 -2.39 -0.02 2.27 16 33 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.07 2.56 6.13 -2.39 -0.01 2.54 16 35 H 0.06 3.08 5.98 -2.39 -0.01 3.06 16 36 H -0.01 -0.68 8.13 -2.39 -0.02 -0.70 16 Total: -1.00 -62.43 268.17 -0.21 -62.64 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.03 Total: 9.82 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 4.67 Total: -6.73 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -7.94 Total: -111.53 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -62.43 -0.21 -62.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218995393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.988 kcal (2) G-P(sol) polarization free energy of solvation -62.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds