Wall clock time and date at job start Mon Mar 30 2020 02:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 108.75464 * 2 1 4 4 C 1.50744 * 108.78880 * 118.23333 * 2 1 3 5 5 C 1.54511 * 108.94600 * 213.54878 * 4 2 1 6 6 N 1.40091 * 111.50675 * 283.99451 * 5 4 2 7 7 C 1.46898 * 110.99708 * 188.14662 * 6 5 4 8 8 C 1.47677 * 114.57272 * 61.44746 * 6 5 4 9 9 C 1.50784 * 108.09780 * 278.68650 * 8 6 5 10 10 H 1.08996 * 108.92854 * 334.03094 * 9 8 6 11 11 C 1.50697 * 108.99581 * 215.23713 * 9 8 6 12 12 H 1.08001 * 120.00227 * 325.78597 * 11 9 8 13 13 C 1.37879 * 120.00304 * 146.04794 * 11 9 8 14 14 N 1.31512 * 119.99532 * 359.73042 * 13 11 9 15 15 Si 1.86793 * 120.00225 * 179.72673 * 13 11 9 16 16 H 1.48503 * 109.47396 * 60.00363 * 15 13 11 17 17 H 1.48497 * 109.47109 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47204 * 300.00484 * 15 13 11 19 19 N 1.47745 * 111.91048 * 94.61197 * 9 8 6 20 20 C 1.46904 * 110.99889 * 84.93793 * 19 9 8 21 21 H 1.08998 * 109.47196 * 178.35332 * 1 2 3 22 22 H 1.08999 * 109.47584 * 298.35810 * 1 2 3 23 23 H 1.09005 * 109.46923 * 58.35538 * 1 2 3 24 24 H 1.09007 * 109.55661 * 333.38673 * 4 2 1 25 25 H 1.08998 * 109.55474 * 93.70651 * 4 2 1 26 26 H 1.08998 * 109.07345 * 44.51036 * 5 4 2 27 27 H 1.08997 * 109.07323 * 163.47146 * 5 4 2 28 28 H 1.09004 * 109.47612 * 63.95090 * 7 6 5 29 29 H 1.09003 * 109.47239 * 183.94915 * 7 6 5 30 30 H 1.08995 * 109.47237 * 303.95071 * 7 6 5 31 31 H 1.08996 * 109.73913 * 159.03836 * 8 6 5 32 32 H 1.08998 * 109.74023 * 38.33838 * 8 6 5 33 33 H 0.97005 * 120.00086 * 179.97438 * 14 13 11 34 34 H 1.09007 * 109.47018 * 65.99230 * 20 19 9 35 35 H 1.08998 * 109.47087 * 185.98727 * 20 19 9 36 36 H 1.09001 * 109.47286 * 305.99227 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8804 1.0322 0.0000 4 6 2.0155 -0.6751 1.2573 5 6 3.3301 -0.0027 1.7122 6 7 4.4135 -0.4049 0.9204 7 6 5.6821 0.0846 1.4761 8 6 4.2923 -0.0557 -0.5094 9 6 3.4203 -1.0919 -1.1723 10 1 3.4861 -2.0224 -0.6086 11 6 3.9214 -1.3311 -2.5733 12 1 4.3461 -0.5166 -3.1413 13 6 3.8329 -2.5886 -3.1319 14 7 3.3159 -3.5804 -2.4401 15 14 4.4471 -2.8833 -4.8711 16 1 5.8941 -2.5583 -4.9469 17 1 4.2397 -4.3081 -5.2345 18 1 3.6953 -2.0177 -5.8150 19 7 2.0070 -0.6657 -1.2335 20 6 1.7609 0.1739 -2.4136 21 1 -0.3633 -1.0272 -0.0295 22 1 -0.3634 0.4881 0.9043 23 1 -0.3633 0.5392 -0.8749 24 1 1.2636 -0.5731 2.0399 25 1 2.1958 -1.7314 1.0579 26 1 3.2197 1.0794 1.6415 27 1 3.5277 -0.2723 2.7497 28 1 5.8506 -0.3699 2.4525 29 1 6.4993 -0.1816 0.8057 30 1 5.6379 1.1684 1.5827 31 1 5.2788 -0.0538 -0.9728 32 1 3.8356 0.9288 -0.6104 33 1 3.2533 -4.4650 -2.8332 34 1 1.8924 -0.4217 -3.3171 35 1 0.7424 0.5606 -2.3784 36 1 2.4653 1.0057 -2.4210 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218995472.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:24 Heat of formation + Delta-G solvation = 18.802455 kcal Electronic energy + Delta-G solvation = -15514.747706 eV Core-core repulsion = 13227.250116 eV Total energy + Delta-G solvation = -2287.497590 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.01653 -35.46601 -33.47517 -31.43072 -28.95567 -27.94037 -25.38387 -25.01755 -23.19072 -21.71057 -20.06719 -18.23809 -16.30222 -15.46214 -15.06966 -14.64442 -14.35441 -14.07948 -13.25261 -12.98062 -12.37138 -12.17225 -12.08438 -11.71434 -11.60117 -11.30989 -11.02248 -10.91055 -10.81693 -10.64553 -10.56027 -10.14114 -10.00494 -9.76820 -9.19228 -8.92698 -8.42442 -7.61179 -6.66259 -5.94223 -4.01172 3.34029 3.39719 3.41349 4.43546 4.66842 5.01034 5.39932 5.43624 5.58003 5.72390 5.77005 5.88900 5.98052 6.05981 6.21753 6.24997 6.27387 6.31917 6.37452 6.55819 6.59067 6.61687 6.72883 6.82497 6.95130 7.12047 7.24764 7.59806 7.86201 7.93716 8.04739 8.24177 8.77634 8.85314 9.14506 9.62849 11.13489 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029413 B = 0.012226 C = 0.009889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.745152 B = 2289.634082 C = 2830.695294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.080 3.920 3 H 0.014 0.986 4 C -0.114 4.114 5 C 0.080 3.920 6 N -0.556 5.556 7 C 0.034 3.966 8 C 0.051 3.949 9 C 0.206 3.794 10 H 0.086 0.914 11 C -0.521 4.521 12 H 0.049 0.951 13 C 0.081 3.919 14 N -0.867 5.867 15 Si 0.886 3.114 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.277 1.277 19 N -0.531 5.531 20 C 0.055 3.945 21 H 0.060 0.940 22 H 0.042 0.958 23 H 0.047 0.953 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.005 0.995 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.012 0.988 31 H 0.071 0.929 32 H 0.013 0.987 33 H 0.261 0.739 34 H 0.074 0.926 35 H 0.031 0.969 36 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.003 6.396 5.758 8.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 H 0.032 0.968 4 C -0.152 4.152 5 C -0.050 4.050 6 N -0.280 5.280 7 C -0.114 4.114 8 C -0.077 4.077 9 C 0.102 3.898 10 H 0.104 0.896 11 C -0.560 4.560 12 H 0.067 0.933 13 C -0.125 4.125 14 N -0.503 5.503 15 Si 0.713 3.287 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.203 1.203 19 N -0.257 5.257 20 C -0.093 4.093 21 H 0.079 0.921 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.107 0.893 26 H 0.023 0.977 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.030 0.970 31 H 0.090 0.910 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.049 0.951 36 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -1.327 5.308 5.746 7.934 hybrid contribution 0.773 1.512 -0.916 1.929 sum -0.555 6.820 4.830 8.376 Atomic orbital electron populations 1.21911 0.96135 1.01883 0.99758 1.21297 0.94470 0.94915 0.92151 0.96782 1.21588 0.94956 1.02583 0.96106 1.20975 0.91877 0.95634 0.96507 1.59083 1.01750 1.63403 1.03790 1.22296 0.92612 0.96474 0.99993 1.22792 1.01999 0.97820 0.85054 1.19300 0.80495 0.94136 0.95914 0.89633 1.20923 1.40923 0.94778 0.99389 0.93275 1.24935 0.94195 0.96234 0.97130 1.69964 1.42858 1.00914 1.36542 0.86786 0.79294 0.77163 0.85410 1.20340 1.21292 1.20278 1.62645 1.24085 1.39752 0.99191 1.21978 0.96180 0.94890 0.96276 0.92104 0.93911 0.93401 0.91948 0.89320 0.97707 0.92210 0.92391 0.91602 0.96964 0.91033 0.96848 0.92947 0.90703 0.95051 0.98166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.99 37.16 0.33 -2.03 16 2 C 0.08 1.57 1.81 -68.20 -0.12 1.45 16 3 H 0.01 0.29 6.40 -51.92 -0.33 -0.04 16 4 C -0.11 -2.10 5.19 -27.07 -0.14 -2.24 16 5 C 0.08 1.41 4.94 -6.55 -0.03 1.38 16 6 N -0.56 -10.96 4.23 -248.03 -1.05 -12.01 16 7 C 0.03 0.56 9.52 60.06 0.57 1.13 16 8 C 0.05 1.13 4.79 -4.51 -0.02 1.11 16 9 C 0.21 5.17 1.90 -69.51 -0.13 5.04 16 10 H 0.09 2.47 6.38 -51.93 -0.33 2.13 16 11 C -0.52 -14.04 5.84 -34.44 -0.20 -14.24 16 12 H 0.05 1.31 7.81 -52.49 -0.41 0.90 16 13 C 0.08 2.22 5.46 -17.82 -0.10 2.12 16 14 N -0.87 -25.12 12.81 55.43 0.71 -24.41 16 15 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 N -0.53 -12.37 4.62 -229.36 -1.06 -13.43 16 20 C 0.06 1.22 8.49 60.07 0.51 1.73 16 21 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 22 H 0.04 0.61 7.99 -51.93 -0.42 0.20 16 23 H 0.05 0.79 6.50 -51.93 -0.34 0.46 16 24 H 0.06 0.97 7.63 -51.93 -0.40 0.57 16 25 H 0.09 1.90 7.19 -51.93 -0.37 1.52 16 26 H 0.01 0.09 7.59 -51.93 -0.39 -0.31 16 27 H 0.06 0.94 8.01 -51.93 -0.42 0.52 16 28 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 29 H 0.07 1.05 7.73 -51.93 -0.40 0.65 16 30 H 0.01 0.18 8.12 -51.93 -0.42 -0.24 16 31 H 0.07 1.61 7.16 -51.93 -0.37 1.23 16 32 H 0.01 0.30 6.27 -51.93 -0.33 -0.03 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.07 1.80 6.99 -51.92 -0.36 1.44 16 35 H 0.03 0.61 6.27 -51.93 -0.33 0.28 16 36 H 0.00 0.00 7.62 -51.93 -0.40 -0.40 16 LS Contribution 269.69 15.07 4.06 4.06 Total: -1.00 -28.45 269.69 -7.68 -36.13 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -5.99 Total: -1.86 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: 0.67 Total: -4.55 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: -1.40 Total: -49.85 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.45 -7.68 -36.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218995472.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.928 kcal (2) G-P(sol) polarization free energy of solvation -28.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds