Wall clock time and date at job start Mon Mar 30 2020 02:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 108.75464 * 2 1 4 4 C 1.50744 * 108.78880 * 118.23333 * 2 1 3 5 5 C 1.54511 * 108.94600 * 213.54878 * 4 2 1 6 6 N 1.40091 * 111.50675 * 283.99451 * 5 4 2 7 7 C 1.46898 * 110.99708 * 188.14662 * 6 5 4 8 8 C 1.47677 * 114.57272 * 61.44746 * 6 5 4 9 9 C 1.50784 * 108.09780 * 278.68650 * 8 6 5 10 10 H 1.08996 * 108.92854 * 334.03094 * 9 8 6 11 11 C 1.50697 * 108.99581 * 215.23713 * 9 8 6 12 12 H 1.08001 * 120.00227 * 325.78597 * 11 9 8 13 13 C 1.37879 * 120.00304 * 146.04794 * 11 9 8 14 14 N 1.31512 * 119.99532 * 359.73042 * 13 11 9 15 15 Si 1.86793 * 120.00225 * 179.72673 * 13 11 9 16 16 H 1.48503 * 109.47396 * 60.00363 * 15 13 11 17 17 H 1.48497 * 109.47109 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47204 * 300.00484 * 15 13 11 19 19 N 1.47745 * 111.91048 * 94.61197 * 9 8 6 20 20 C 1.46904 * 110.99889 * 84.93793 * 19 9 8 21 21 H 1.08998 * 109.47196 * 178.35332 * 1 2 3 22 22 H 1.08999 * 109.47584 * 298.35810 * 1 2 3 23 23 H 1.09005 * 109.46923 * 58.35538 * 1 2 3 24 24 H 1.09007 * 109.55661 * 333.38673 * 4 2 1 25 25 H 1.08998 * 109.55474 * 93.70651 * 4 2 1 26 26 H 1.08998 * 109.07345 * 44.51036 * 5 4 2 27 27 H 1.08997 * 109.07323 * 163.47146 * 5 4 2 28 28 H 1.09004 * 109.47612 * 63.95090 * 7 6 5 29 29 H 1.09003 * 109.47239 * 183.94915 * 7 6 5 30 30 H 1.08995 * 109.47237 * 303.95071 * 7 6 5 31 31 H 1.08996 * 109.73913 * 159.03836 * 8 6 5 32 32 H 1.08998 * 109.74023 * 38.33838 * 8 6 5 33 33 H 0.97005 * 120.00086 * 179.97438 * 14 13 11 34 34 H 1.09007 * 109.47018 * 65.99230 * 20 19 9 35 35 H 1.08998 * 109.47087 * 185.98727 * 20 19 9 36 36 H 1.09001 * 109.47286 * 305.99227 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8804 1.0322 0.0000 4 6 2.0155 -0.6751 1.2573 5 6 3.3301 -0.0027 1.7122 6 7 4.4135 -0.4049 0.9204 7 6 5.6821 0.0846 1.4761 8 6 4.2923 -0.0557 -0.5094 9 6 3.4203 -1.0919 -1.1723 10 1 3.4861 -2.0224 -0.6086 11 6 3.9214 -1.3311 -2.5733 12 1 4.3461 -0.5166 -3.1413 13 6 3.8329 -2.5886 -3.1319 14 7 3.3159 -3.5804 -2.4401 15 14 4.4471 -2.8833 -4.8711 16 1 5.8941 -2.5583 -4.9469 17 1 4.2397 -4.3081 -5.2345 18 1 3.6953 -2.0177 -5.8150 19 7 2.0070 -0.6657 -1.2335 20 6 1.7609 0.1739 -2.4136 21 1 -0.3633 -1.0272 -0.0295 22 1 -0.3634 0.4881 0.9043 23 1 -0.3633 0.5392 -0.8749 24 1 1.2636 -0.5731 2.0399 25 1 2.1958 -1.7314 1.0579 26 1 3.2197 1.0794 1.6415 27 1 3.5277 -0.2723 2.7497 28 1 5.8506 -0.3699 2.4525 29 1 6.4993 -0.1816 0.8057 30 1 5.6379 1.1684 1.5827 31 1 5.2788 -0.0538 -0.9728 32 1 3.8356 0.9288 -0.6104 33 1 3.2533 -4.4650 -2.8332 34 1 1.8924 -0.4217 -3.3171 35 1 0.7424 0.5606 -2.3784 36 1 2.4653 1.0057 -2.4210 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218995472.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:24 Heat of formation + Delta-G solvation = -1.219701 kcal Electronic energy + Delta-G solvation = -15515.615932 eV Core-core repulsion = 13227.250116 eV Total energy + Delta-G solvation = -2288.365816 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.63406 -37.07290 -35.30250 -33.31663 -30.55425 -29.51163 -27.31666 -26.55340 -24.83306 -23.43090 -21.62205 -19.98592 -18.30680 -17.08058 -16.82399 -16.29867 -16.06614 -15.66240 -14.93461 -14.48974 -14.09641 -13.89376 -13.52197 -13.40882 -13.13253 -12.84989 -12.70728 -12.63857 -12.49740 -12.39141 -12.28158 -11.72802 -11.57081 -11.50534 -11.04923 -10.86640 -10.52002 -9.12633 -8.43885 -8.04208 -6.16492 1.43734 1.44390 1.51974 2.45526 3.09029 3.20818 3.65703 4.00988 4.03949 4.21285 4.42059 4.48135 4.53533 4.58833 4.67563 4.75560 4.80690 4.85942 4.89228 4.99466 5.05112 5.09639 5.11397 5.22789 5.37463 5.41764 5.55026 5.66571 5.82586 6.16685 6.31450 6.58831 6.90349 6.94136 7.17271 7.50332 9.03666 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029413 B = 0.012226 C = 0.009889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.745152 B = 2289.634082 C = 2830.695294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.077 3.923 3 H 0.014 0.986 4 C -0.111 4.111 5 C 0.079 3.921 6 N -0.576 5.576 7 C 0.035 3.965 8 C 0.065 3.935 9 C 0.215 3.785 10 H 0.042 0.958 11 C -0.529 4.529 12 H 0.045 0.955 13 C 0.032 3.968 14 N -0.904 5.904 15 Si 0.947 3.053 16 H -0.271 1.271 17 H -0.286 1.286 18 H -0.272 1.272 19 N -0.554 5.554 20 C 0.064 3.936 21 H 0.048 0.952 22 H 0.076 0.924 23 H 0.049 0.951 24 H 0.096 0.904 25 H 0.051 0.949 26 H 0.013 0.987 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.027 0.973 31 H 0.060 0.940 32 H 0.012 0.988 33 H 0.259 0.741 34 H 0.047 0.953 35 H 0.057 0.943 36 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.263 7.748 6.587 10.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.031 4.031 3 H 0.032 0.968 4 C -0.149 4.149 5 C -0.050 4.050 6 N -0.301 5.301 7 C -0.112 4.112 8 C -0.064 4.064 9 C 0.109 3.891 10 H 0.060 0.940 11 C -0.568 4.568 12 H 0.063 0.937 13 C -0.170 4.170 14 N -0.542 5.542 15 Si 0.773 3.227 16 H -0.196 1.196 17 H -0.212 1.212 18 H -0.197 1.197 19 N -0.280 5.280 20 C -0.084 4.084 21 H 0.067 0.933 22 H 0.094 0.906 23 H 0.068 0.932 24 H 0.114 0.886 25 H 0.070 0.930 26 H 0.031 0.969 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.030 0.970 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -1.582 6.680 6.583 9.511 hybrid contribution 0.836 1.129 -1.102 1.785 sum -0.746 7.809 5.481 9.570 Atomic orbital electron populations 1.21856 0.93877 1.01602 1.01615 1.21438 0.96231 0.94439 0.90956 0.96766 1.21603 0.96595 1.00120 0.96616 1.21052 0.90789 0.95872 0.97325 1.59014 1.03886 1.64403 1.02778 1.22349 0.90667 0.97519 1.00679 1.22428 1.00476 0.96600 0.86851 1.18991 0.82173 0.93417 0.94525 0.93958 1.21215 1.40471 0.94712 1.00407 0.93657 1.25646 0.94536 0.96062 1.00762 1.70109 1.44680 1.01202 1.38198 0.85803 0.78972 0.76955 0.80980 1.19630 1.21173 1.19695 1.62402 1.23053 1.41288 1.01216 1.21854 0.97684 0.94072 0.94797 0.93303 0.90555 0.93158 0.88564 0.92979 0.96907 0.89617 0.90185 0.92108 0.95471 0.92181 0.96953 0.93179 0.93434 0.92402 0.98307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 8.99 71.98 0.65 -3.50 16 2 C 0.08 2.92 1.81 43.96 0.08 3.00 16 3 H 0.01 0.55 6.40 -2.38 -0.02 0.53 16 4 C -0.11 -3.92 5.19 30.38 0.16 -3.76 16 5 C 0.08 2.61 4.94 88.05 0.44 3.04 16 6 N -0.58 -22.11 4.23 -938.62 -3.97 -26.08 16 7 C 0.04 1.07 9.52 127.69 1.22 2.28 16 8 C 0.06 2.87 4.79 85.43 0.41 3.28 16 9 C 0.21 10.99 1.90 43.29 0.08 11.07 16 10 H 0.04 2.54 6.38 -2.39 -0.02 2.52 16 11 C -0.53 -29.12 5.84 25.60 0.15 -28.97 16 12 H 0.05 2.47 7.81 -2.91 -0.02 2.44 16 13 C 0.03 1.78 5.46 84.66 0.46 2.24 16 14 N -0.90 -53.98 12.81 21.45 0.27 -53.71 16 15 Si 0.95 43.97 29.54 68.60 2.03 45.99 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 18 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 19 N -0.55 -25.89 4.62 -879.57 -4.07 -29.96 16 20 C 0.06 2.82 8.49 127.69 1.08 3.91 16 21 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.08 1.90 7.99 -2.39 -0.02 1.88 16 23 H 0.05 1.54 6.50 -2.38 -0.02 1.52 16 24 H 0.10 2.69 7.63 -2.38 -0.02 2.67 16 25 H 0.05 2.24 7.19 -2.39 -0.02 2.22 16 26 H 0.01 0.42 7.59 -2.39 -0.02 0.40 16 27 H 0.09 2.40 8.01 -2.39 -0.02 2.38 16 28 H 0.08 2.07 8.12 -2.38 -0.02 2.05 16 29 H 0.06 1.88 7.73 -2.39 -0.02 1.86 16 30 H 0.03 0.74 8.12 -2.39 -0.02 0.72 16 31 H 0.06 2.73 7.16 -2.39 -0.02 2.71 16 32 H 0.01 0.54 6.27 -2.39 -0.01 0.52 16 33 H 0.26 14.77 8.31 -92.70 -0.77 14.00 16 34 H 0.05 2.31 6.99 -2.38 -0.02 2.29 16 35 H 0.06 2.18 6.27 -2.39 -0.01 2.17 16 36 H 0.00 -0.07 7.62 -2.39 -0.02 -0.09 16 Total: -1.00 -62.22 269.69 0.02 -62.20 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 1.03 Total: 8.96 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 4.72 Total: -7.40 kcal Atomic # 7 Polarization: -101.99 SS G_CDS: -7.76 Total: -109.75 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -62.22 0.02 -62.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218995472.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.981 kcal (2) G-P(sol) polarization free energy of solvation -62.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds