Wall clock time and date at job start Mon Mar 30 2020 03:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47231 * 2 1 4 4 C 1.47903 * 110.99993 * 189.99751 * 3 2 1 5 5 C 1.50809 * 108.49073 * 153.77628 * 4 3 2 6 6 H 1.08997 * 108.95299 * 331.87518 * 5 4 3 7 7 C 1.53003 * 108.95141 * 213.22925 * 5 4 3 8 8 C 1.53691 * 112.10053 * 92.55551 * 5 4 3 9 9 N 1.48068 * 112.46789 * 318.55247 * 8 5 4 10 10 C 1.44571 * 113.85953 * 318.31473 * 9 8 5 11 11 H 1.08999 * 109.57575 * 334.29226 * 10 9 8 12 12 C 1.50697 * 109.57525 * 214.03423 * 10 9 8 13 13 H 1.07991 * 120.00449 * 239.72721 * 12 10 9 14 14 C 1.37885 * 119.99686 * 60.00553 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 10 17 17 H 1.48498 * 109.47416 * 59.99812 * 16 14 12 18 18 H 1.48508 * 109.46609 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46903 * 299.99397 * 16 14 12 20 20 C 1.40015 * 110.99781 * 62.02507 * 3 2 1 21 21 H 1.08999 * 109.47446 * 60.00249 * 1 2 3 22 22 H 1.08999 * 109.47112 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47269 * 299.99646 * 1 2 3 24 24 H 1.09004 * 109.47115 * 239.99901 * 2 1 3 25 25 H 1.09003 * 109.47319 * 120.00254 * 2 1 3 26 26 H 1.09000 * 109.63336 * 34.07600 * 4 3 2 27 27 H 1.08993 * 109.63804 * 273.47771 * 4 3 2 28 28 H 1.08999 * 109.47308 * 297.41241 * 7 5 4 29 29 H 1.08997 * 109.47417 * 57.41504 * 7 5 4 30 30 H 1.09008 * 109.46970 * 177.41273 * 7 5 4 31 31 H 1.09002 * 108.88440 * 197.78410 * 8 5 4 32 32 H 1.08998 * 108.88308 * 79.32605 * 8 5 4 33 33 H 1.00909 * 110.99511 * 192.19564 * 9 8 5 34 34 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 35 35 H 1.09000 * 108.95859 * 67.43273 * 20 3 2 36 36 H 1.08997 * 108.96091 * 308.77118 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4784 1.4314 -0.2397 5 6 3.8191 2.7632 -0.8598 6 1 2.9555 3.1252 -1.4177 7 6 4.9898 2.5761 -1.8269 8 6 4.2063 3.8106 0.1962 9 7 3.3366 3.7555 1.3933 10 6 1.9355 3.5681 1.0902 11 1 1.7244 3.9471 0.0902 12 6 1.0970 4.3101 2.0988 13 1 0.3908 3.7725 2.7140 14 6 1.2275 5.6763 2.2323 15 7 2.0877 6.3309 1.4831 16 14 0.1827 6.5970 3.4772 17 1 0.4609 6.0753 4.8394 18 1 0.5106 8.0445 3.4244 19 1 -1.2544 6.4036 3.1569 20 6 1.6088 2.0624 1.1544 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.7638 0.6277 -0.9185 27 1 4.0087 1.3215 0.7061 28 1 5.8661 2.2358 -1.2752 29 1 4.7240 1.8344 -2.5801 30 1 5.2134 3.5251 -2.3146 31 1 4.1325 4.8033 -0.2479 32 1 5.2383 3.6387 0.5017 33 1 3.4748 4.5661 1.9782 34 1 2.1797 7.2920 1.5773 35 1 2.1117 1.6274 2.0181 36 1 0.5325 1.9383 1.2737 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218995951.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:39 Heat of formation + Delta-G solvation = -0.206510 kcal Electronic energy + Delta-G solvation = -15244.614763 eV Core-core repulsion = 12956.292883 eV Total energy + Delta-G solvation = -2288.321881 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.69503 -35.09196 -33.87027 -31.33330 -30.12524 -27.81272 -25.51811 -24.23157 -23.64703 -21.18242 -19.57027 -18.53319 -16.60307 -15.17658 -14.93762 -14.67798 -14.38160 -14.10312 -13.63543 -12.97571 -12.51667 -12.24100 -12.02536 -12.02002 -11.59321 -11.19192 -11.11202 -10.89725 -10.85803 -10.61076 -10.50129 -10.16616 -9.91792 -9.56665 -9.44865 -8.96773 -8.66280 -7.39867 -6.71913 -6.08229 -4.14331 3.30148 3.34623 3.37528 4.37333 4.65422 5.16925 5.43209 5.48888 5.58819 5.65446 5.68470 5.84026 5.99986 6.07548 6.16138 6.18059 6.31468 6.36079 6.41777 6.49723 6.56662 6.63599 6.76851 6.79895 6.96103 7.10848 7.15674 7.58876 7.87040 7.93712 8.13073 8.32143 8.83509 9.06143 9.26543 9.51539 10.98117 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028929 B = 0.011125 C = 0.008445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.654449 B = 2516.321987 C = 3314.855588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 N -0.551 5.551 4 C 0.082 3.918 5 C -0.091 4.091 6 H 0.075 0.925 7 C -0.140 4.140 8 C 0.076 3.924 9 N -0.695 5.695 10 C 0.227 3.773 11 H 0.013 0.987 12 C -0.517 4.517 13 H 0.058 0.942 14 C 0.063 3.937 15 N -0.896 5.896 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.078 3.922 21 H 0.060 0.940 22 H 0.049 0.951 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.022 0.978 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.023 0.977 32 H 0.042 0.958 33 H 0.357 0.643 34 H 0.263 0.737 35 H 0.010 0.990 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.205 -8.174 -3.815 9.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.071 4.071 3 N -0.275 5.275 4 C -0.045 4.045 5 C -0.110 4.110 6 H 0.094 0.906 7 C -0.198 4.198 8 C -0.054 4.054 9 N -0.329 5.329 10 C 0.118 3.882 11 H 0.031 0.969 12 C -0.556 4.556 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.535 5.535 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.052 4.052 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.040 0.960 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.060 0.940 33 H 0.179 0.821 34 H 0.073 0.927 35 H 0.028 0.972 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.157 -8.399 -4.124 9.602 hybrid contribution -0.379 1.125 0.984 1.542 sum 1.778 -7.274 -3.140 8.119 Atomic orbital electron populations 1.21851 0.95523 1.00528 1.02883 1.21979 0.95695 0.90037 0.99376 1.59340 1.13095 1.12904 1.42164 1.21698 0.87263 0.96355 0.99158 1.20975 0.97955 0.95662 0.96449 0.90644 1.21830 0.98260 1.00970 0.98746 1.22007 0.95914 0.95906 0.91595 1.59744 1.08619 1.47340 1.17245 1.18705 0.85239 0.88316 0.95968 0.96949 1.21338 1.21373 0.92036 1.20875 0.92400 1.25029 0.95424 0.97567 0.95907 1.69862 1.35721 1.08615 1.39343 0.86571 0.80718 0.78471 0.81724 1.20171 1.21354 1.20262 1.21258 0.98597 0.97125 0.88207 0.92077 0.93195 0.92142 0.91955 0.95959 0.92693 0.93802 0.93220 0.93229 0.93057 0.95849 0.94007 0.82119 0.92685 0.97153 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.71 37.16 0.36 -1.86 16 2 C 0.06 0.91 5.66 -3.83 -0.02 0.89 16 3 N -0.55 -10.73 4.11 -239.75 -0.99 -11.72 16 4 C 0.08 1.50 4.85 -4.37 -0.02 1.48 16 5 C -0.09 -1.71 2.25 -91.36 -0.21 -1.92 16 6 H 0.08 1.60 7.23 -51.93 -0.38 1.23 16 7 C -0.14 -2.07 8.85 37.16 0.33 -1.75 16 8 C 0.08 1.62 5.87 -2.82 -0.02 1.60 16 9 N -0.69 -17.01 5.88 -107.60 -0.63 -17.65 16 10 C 0.23 5.82 2.06 -69.48 -0.14 5.67 16 11 H 0.01 0.37 6.94 -51.93 -0.36 0.01 16 12 C -0.52 -14.23 8.53 -34.44 -0.29 -14.52 16 13 H 0.06 1.57 7.71 -52.49 -0.40 1.17 16 14 C 0.06 1.71 5.06 -17.82 -0.09 1.62 16 15 N -0.90 -25.19 11.99 55.43 0.66 -24.53 16 16 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 C 0.08 1.74 4.27 -6.75 -0.03 1.71 16 21 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.96 6.27 -51.93 -0.33 0.64 16 24 H 0.06 0.89 7.81 -51.93 -0.41 0.48 16 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.87 7.18 -51.93 -0.37 0.49 16 27 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 28 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 29 H 0.05 0.66 8.02 -51.93 -0.42 0.24 16 30 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 31 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.83 7.95 -51.93 -0.41 0.41 16 33 H 0.36 9.53 6.64 -39.29 -0.26 9.27 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.01 0.24 8.07 -51.93 -0.42 -0.18 16 36 H 0.06 1.37 5.56 -51.93 -0.29 1.08 16 LS Contribution 274.03 15.07 4.13 4.13 Total: -1.00 -27.70 274.03 -8.08 -35.78 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -6.11 Total: 4.89 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -0.13 Total: -7.06 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.95 Total: -53.90 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.70 -8.08 -35.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218995951.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.576 kcal (2) G-P(sol) polarization free energy of solvation -27.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds