Wall clock time and date at job start Mon Mar 30 2020 03:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47231 * 2 1 4 4 C 1.47903 * 110.99993 * 189.99751 * 3 2 1 5 5 C 1.50809 * 108.49073 * 153.77628 * 4 3 2 6 6 H 1.08997 * 108.95299 * 331.87518 * 5 4 3 7 7 C 1.53003 * 108.95141 * 213.22925 * 5 4 3 8 8 C 1.53691 * 112.10053 * 92.55551 * 5 4 3 9 9 N 1.48068 * 112.46789 * 318.55247 * 8 5 4 10 10 C 1.44571 * 113.85953 * 318.31473 * 9 8 5 11 11 H 1.08999 * 109.57575 * 334.29226 * 10 9 8 12 12 C 1.50697 * 109.57525 * 214.03423 * 10 9 8 13 13 H 1.07991 * 120.00449 * 239.72721 * 12 10 9 14 14 C 1.37885 * 119.99686 * 60.00553 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.72095 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.72528 * 14 12 10 17 17 H 1.48498 * 109.47416 * 59.99812 * 16 14 12 18 18 H 1.48508 * 109.46609 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46903 * 299.99397 * 16 14 12 20 20 C 1.40015 * 110.99781 * 62.02507 * 3 2 1 21 21 H 1.08999 * 109.47446 * 60.00249 * 1 2 3 22 22 H 1.08999 * 109.47112 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47269 * 299.99646 * 1 2 3 24 24 H 1.09004 * 109.47115 * 239.99901 * 2 1 3 25 25 H 1.09003 * 109.47319 * 120.00254 * 2 1 3 26 26 H 1.09000 * 109.63336 * 34.07600 * 4 3 2 27 27 H 1.08993 * 109.63804 * 273.47771 * 4 3 2 28 28 H 1.08999 * 109.47308 * 297.41241 * 7 5 4 29 29 H 1.08997 * 109.47417 * 57.41504 * 7 5 4 30 30 H 1.09008 * 109.46970 * 177.41273 * 7 5 4 31 31 H 1.09002 * 108.88440 * 197.78410 * 8 5 4 32 32 H 1.08998 * 108.88308 * 79.32605 * 8 5 4 33 33 H 1.00909 * 110.99511 * 192.19564 * 9 8 5 34 34 H 0.97000 * 119.99651 * 180.02562 * 15 14 12 35 35 H 1.09000 * 108.95859 * 67.43273 * 20 3 2 36 36 H 1.08997 * 108.96091 * 308.77118 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4784 1.4314 -0.2397 5 6 3.8191 2.7632 -0.8598 6 1 2.9555 3.1252 -1.4177 7 6 4.9898 2.5761 -1.8269 8 6 4.2063 3.8106 0.1962 9 7 3.3366 3.7555 1.3933 10 6 1.9355 3.5681 1.0902 11 1 1.7244 3.9471 0.0902 12 6 1.0970 4.3101 2.0988 13 1 0.3908 3.7725 2.7140 14 6 1.2275 5.6763 2.2323 15 7 2.0877 6.3309 1.4831 16 14 0.1827 6.5970 3.4772 17 1 0.4609 6.0753 4.8394 18 1 0.5106 8.0445 3.4244 19 1 -1.2544 6.4036 3.1569 20 6 1.6088 2.0624 1.1544 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.7638 0.6277 -0.9185 27 1 4.0087 1.3215 0.7061 28 1 5.8661 2.2358 -1.2752 29 1 4.7240 1.8344 -2.5801 30 1 5.2134 3.5251 -2.3146 31 1 4.1325 4.8033 -0.2479 32 1 5.2383 3.6387 0.5017 33 1 3.4748 4.5661 1.9782 34 1 2.1797 7.2920 1.5773 35 1 2.1117 1.6274 2.0181 36 1 0.5325 1.9383 1.2737 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218995951.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:38 Heat of formation + Delta-G solvation = -19.332357 kcal Electronic energy + Delta-G solvation = -15245.444122 eV Core-core repulsion = 12956.292883 eV Total energy + Delta-G solvation = -2289.151240 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.32835 -36.73836 -35.65062 -33.30531 -31.53174 -29.51238 -27.31415 -25.65841 -25.47959 -22.74544 -21.21410 -20.24760 -18.58870 -16.98900 -16.63517 -16.34591 -16.07907 -15.64441 -15.39951 -14.53227 -14.11786 -13.87603 -13.50130 -13.43482 -13.11809 -12.92292 -12.81431 -12.57734 -12.43930 -12.32115 -11.92305 -11.71866 -11.44843 -11.34231 -11.17661 -11.00863 -10.76539 -8.96529 -8.72419 -8.18479 -6.33594 1.40981 1.42324 1.50316 2.39162 3.05631 3.19687 3.93654 4.03122 4.14405 4.23050 4.37518 4.44776 4.57569 4.70218 4.74523 4.81550 4.89115 4.90879 4.96933 5.01689 5.07436 5.15907 5.17721 5.27119 5.37913 5.41792 5.48131 5.57748 5.79452 6.05689 6.45385 6.62831 6.71244 7.06717 7.18066 7.36412 8.86097 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.028929 B = 0.011125 C = 0.008445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.654449 B = 2516.321987 C = 3314.855588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 N -0.566 5.566 4 C 0.086 3.914 5 C -0.087 4.087 6 H 0.044 0.956 7 C -0.130 4.130 8 C 0.075 3.925 9 N -0.694 5.694 10 C 0.231 3.769 11 H -0.030 1.030 12 C -0.543 4.543 13 H 0.055 0.945 14 C 0.019 3.981 15 N -0.920 5.920 16 Si 0.964 3.036 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.099 3.901 21 H 0.054 0.946 22 H 0.081 0.919 23 H 0.041 0.959 24 H 0.089 0.911 25 H 0.026 0.974 26 H 0.091 0.909 27 H 0.030 0.970 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.051 0.949 31 H -0.006 1.006 32 H 0.061 0.939 33 H 0.340 0.660 34 H 0.264 0.736 35 H -0.003 1.003 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.435 -9.639 -4.097 10.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 N -0.290 5.290 4 C -0.041 4.041 5 C -0.106 4.106 6 H 0.063 0.937 7 C -0.188 4.188 8 C -0.054 4.054 9 N -0.326 5.326 10 C 0.121 3.879 11 H -0.012 1.012 12 C -0.582 4.582 13 H 0.073 0.927 14 C -0.181 4.181 15 N -0.559 5.559 16 Si 0.789 3.211 17 H -0.194 1.194 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.032 4.032 21 H 0.073 0.927 22 H 0.100 0.900 23 H 0.060 0.940 24 H 0.107 0.893 25 H 0.045 0.955 26 H 0.109 0.891 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.013 0.987 32 H 0.080 0.920 33 H 0.160 0.840 34 H 0.073 0.927 35 H 0.015 0.985 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.389 -9.893 -4.420 11.096 hybrid contribution -0.437 1.576 1.031 1.934 sum 1.951 -8.317 -3.389 9.190 Atomic orbital electron populations 1.21827 0.94790 1.02218 1.01590 1.22121 0.96357 0.87898 1.00790 1.59302 1.14144 1.15120 1.40458 1.21739 0.86297 0.96887 0.99196 1.20937 0.98604 0.95101 0.95967 0.93699 1.21755 0.96874 1.01906 0.98307 1.22129 0.96372 0.95661 0.91250 1.59827 1.08345 1.46089 1.18354 1.18601 0.85765 0.90379 0.93140 1.01191 1.21662 1.22085 0.92911 1.21529 0.92671 1.25792 0.96462 0.98278 0.97581 1.69987 1.36729 1.08758 1.40453 0.85528 0.79038 0.77116 0.79429 1.19439 1.20906 1.19797 1.20877 0.98238 0.95065 0.88992 0.92730 0.90019 0.94025 0.89289 0.95543 0.89107 0.95117 0.91581 0.90926 0.92986 0.98721 0.92031 0.84031 0.92673 0.98496 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.71 71.98 0.70 -3.36 16 2 C 0.06 1.63 5.66 86.30 0.49 2.12 16 3 N -0.57 -21.59 4.11 -912.44 -3.75 -25.34 16 4 C 0.09 2.97 4.85 85.40 0.41 3.38 16 5 C -0.09 -3.21 2.25 -11.27 -0.03 -3.23 16 6 H 0.04 1.94 7.23 -2.39 -0.02 1.92 16 7 C -0.13 -3.54 8.85 71.98 0.64 -2.90 16 8 C 0.08 3.29 5.87 86.31 0.51 3.79 16 9 N -0.69 -34.97 5.88 -494.34 -2.91 -37.88 16 10 C 0.23 12.24 2.06 45.01 0.09 12.33 16 11 H -0.03 -1.79 6.94 -2.39 -0.02 -1.80 16 12 C -0.54 -30.69 8.53 25.60 0.22 -30.47 16 13 H 0.06 3.06 7.71 -2.92 -0.02 3.04 16 14 C 0.02 1.03 5.06 84.66 0.43 1.46 16 15 N -0.92 -53.08 11.99 21.45 0.26 -52.82 16 16 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 19 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 20 C 0.10 4.47 4.27 87.96 0.38 4.85 16 21 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 22 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 23 H 0.04 1.29 6.27 -2.39 -0.01 1.28 16 24 H 0.09 2.19 7.81 -2.38 -0.02 2.17 16 25 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.09 2.51 7.18 -2.39 -0.02 2.50 16 27 H 0.03 1.16 7.57 -2.39 -0.02 1.14 16 28 H 0.07 1.60 8.11 -2.39 -0.02 1.58 16 29 H 0.07 1.66 8.02 -2.39 -0.02 1.64 16 30 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 31 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 32 H 0.06 2.41 7.95 -2.39 -0.02 2.39 16 33 H 0.34 18.82 6.64 -89.69 -0.60 18.22 16 34 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.00 -0.14 8.07 -2.39 -0.02 -0.16 16 36 H 0.06 2.62 5.56 -2.39 -0.01 2.61 16 Total: -1.00 -61.25 274.03 -0.10 -61.35 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.44 Total: 20.82 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 3.83 Total: -12.03 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -6.40 Total: -116.04 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -61.25 -0.10 -61.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218995951.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.018 kcal (2) G-P(sol) polarization free energy of solvation -61.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds