Wall clock time and date at job start Mon Mar 30 2020 02:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.63722 * 2 1 4 4 C 1.54519 * 109.55512 * 239.73252 * 2 1 3 5 5 N 1.40083 * 111.49914 * 164.15762 * 4 2 1 6 6 C 1.46898 * 110.99694 * 188.14629 * 5 4 2 7 7 C 1.47686 * 114.57527 * 61.44509 * 5 4 2 8 8 C 1.50778 * 108.09629 * 278.67846 * 7 5 4 9 9 H 1.09000 * 108.99473 * 333.98867 * 8 7 5 10 10 C 1.50703 * 108.98972 * 215.23940 * 8 7 5 11 11 H 1.07991 * 120.00251 * 245.24670 * 10 8 7 12 12 C 1.37886 * 119.99907 * 65.25305 * 10 8 7 13 13 N 1.31517 * 119.99759 * 359.97438 * 12 10 8 14 14 Si 1.86799 * 119.99994 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46626 * 90.00036 * 14 12 10 16 16 H 1.48499 * 109.46920 * 209.99709 * 14 12 10 17 17 H 1.48495 * 109.46996 * 330.00096 * 14 12 10 18 18 N 1.47740 * 111.90958 * 94.61980 * 8 7 5 19 19 C 1.46897 * 111.00363 * 84.93900 * 18 8 7 20 20 C 1.48073 * 113.78553 * 318.87148 * 18 8 7 21 21 H 1.09002 * 109.46833 * 180.27130 * 1 2 3 22 22 H 1.08996 * 109.47330 * 300.26426 * 1 2 3 23 23 H 1.08994 * 109.47272 * 60.27265 * 1 2 3 24 24 H 1.08993 * 109.07253 * 284.67289 * 4 2 1 25 25 H 1.08995 * 109.07642 * 43.63690 * 4 2 1 26 26 H 1.08999 * 109.47568 * 60.00029 * 6 5 4 27 27 H 1.09001 * 109.47076 * 179.97438 * 6 5 4 28 28 H 1.09000 * 109.47223 * 299.99814 * 6 5 4 29 29 H 1.08998 * 109.73805 * 38.33403 * 7 5 4 30 30 H 1.09003 * 109.73531 * 159.02469 * 7 5 4 31 31 H 0.96998 * 119.99635 * 179.97438 * 13 12 10 32 32 H 1.08994 * 109.47408 * 70.04536 * 19 18 8 33 33 H 1.08998 * 109.47168 * 190.04720 * 19 18 8 34 34 H 1.09002 * 109.46890 * 310.04477 * 19 18 8 35 35 H 1.08999 * 108.78815 * 197.40005 * 20 18 8 36 36 H 1.08998 * 108.78753 * 79.18216 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8963 1.0266 0.0000 4 6 2.0472 -0.7339 -1.2576 5 7 3.4006 -0.4589 -1.4923 6 6 3.8309 -1.0011 -2.7880 7 6 4.3108 -0.8868 -0.4108 8 6 4.2824 0.1651 0.6690 9 1 4.0110 1.1226 0.2244 10 6 5.6564 0.2809 1.2771 11 1 5.8146 0.0077 2.3099 12 6 6.7116 0.7358 0.5150 13 7 6.5190 1.0682 -0.7428 14 14 8.4145 0.8800 1.2690 15 1 9.1500 -0.3959 1.0780 16 1 9.1569 1.9831 0.6077 17 1 8.2904 1.1673 2.7206 18 7 3.3117 -0.1633 1.7332 19 6 3.9106 -1.0550 2.7352 20 6 2.0346 -0.7159 1.2268 21 1 -0.3633 -1.0277 0.0049 22 1 -0.3634 0.5179 0.8876 23 1 -0.3633 0.5096 -0.8924 24 1 1.9206 -1.8078 -1.1206 25 1 1.4640 -0.4149 -2.1213 26 1 3.2394 -0.5505 -3.5850 27 1 4.8852 -0.7731 -2.9452 28 1 3.6874 -2.0816 -2.7955 29 1 3.9762 -1.8411 -0.0041 30 1 5.3239 -0.9871 -0.8005 31 1 7.2612 1.3886 -1.2789 32 1 4.6560 -0.5061 3.3108 33 1 3.1334 -1.4232 3.4048 34 1 4.3870 -1.8973 2.2335 35 1 1.2829 -0.6390 2.0123 36 1 2.1793 -1.7687 0.9844 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218996140.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:27 Heat of formation + Delta-G solvation = 2.010189 kcal Electronic energy + Delta-G solvation = -15520.235462 eV Core-core repulsion = 13232.009705 eV Total energy + Delta-G solvation = -2288.225757 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.66928 -36.90042 -35.61012 -33.92746 -30.28031 -28.37776 -27.87960 -26.62244 -25.18541 -23.41459 -21.36356 -20.36196 -18.22416 -17.29273 -16.55547 -16.13936 -16.06455 -15.69977 -15.16518 -14.53473 -14.04978 -13.98516 -13.65116 -13.30972 -13.10812 -13.01214 -12.74602 -12.68992 -12.49415 -12.33975 -12.03735 -11.89595 -11.72697 -11.38238 -11.27088 -10.70662 -10.43861 -9.09521 -8.62105 -8.03361 -6.16261 1.42600 1.44621 1.54041 2.45533 3.14627 3.33799 3.40643 3.87883 4.03649 4.20525 4.46266 4.49867 4.56179 4.61881 4.67825 4.73347 4.75992 4.87046 4.89846 4.91302 5.01798 5.12045 5.15927 5.23002 5.35883 5.38087 5.51726 5.73622 5.78508 6.17015 6.35360 6.55507 6.70651 6.91777 7.02242 7.52202 9.01247 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034357 B = 0.011683 C = 0.009486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.777340 B = 2395.995598 C = 2950.925595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.093 4.093 3 H 0.058 0.942 4 C 0.083 3.917 5 N -0.569 5.569 6 C 0.045 3.955 7 C 0.086 3.914 8 C 0.230 3.770 9 H 0.016 0.984 10 C -0.542 4.542 11 H 0.067 0.933 12 C 0.017 3.983 13 N -0.901 5.901 14 Si 0.952 3.048 15 H -0.278 1.278 16 H -0.286 1.286 17 H -0.270 1.270 18 N -0.567 5.567 19 C 0.051 3.949 20 C 0.067 3.933 21 H 0.064 0.936 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.006 0.994 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.019 0.981 29 H -0.004 1.004 30 H 0.059 0.941 31 H 0.258 0.742 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.005 0.995 35 H 0.079 0.921 36 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.759 -4.740 -0.158 9.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.112 4.112 3 H 0.077 0.923 4 C -0.047 4.047 5 N -0.292 5.292 6 C -0.102 4.102 7 C -0.042 4.042 8 C 0.123 3.877 9 H 0.034 0.966 10 C -0.580 4.580 11 H 0.085 0.915 12 C -0.184 4.184 13 N -0.539 5.539 14 Si 0.778 3.222 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.195 1.195 18 N -0.292 5.292 19 C -0.097 4.097 20 C -0.060 4.060 21 H 0.083 0.917 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.024 0.976 25 H 0.099 0.901 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.014 0.986 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.024 0.976 35 H 0.097 0.903 36 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -8.761 -3.781 -0.113 9.542 hybrid contribution 1.460 -1.391 -0.235 2.031 sum -7.301 -5.172 -0.347 8.954 Atomic orbital electron populations 1.21670 0.91645 1.02426 1.02660 1.21102 0.97260 0.99647 0.93218 0.92331 1.21129 0.88827 0.96053 0.98661 1.58892 1.03123 1.63642 1.03582 1.22185 1.00895 0.96317 0.90846 1.22154 0.94889 0.94918 0.92281 1.18811 0.89052 0.93306 0.86581 0.96596 1.21829 0.93683 1.44452 0.98083 0.91466 1.25687 1.02216 0.95101 0.95356 1.70182 1.32013 1.44057 1.07653 0.85657 0.80309 0.77494 0.78732 1.20377 1.21192 1.19460 1.62154 1.05310 1.45154 1.16615 1.22085 0.98659 0.94072 0.94873 1.21943 0.91725 0.95230 0.97089 0.91735 0.91625 0.91516 0.97607 0.90138 0.90499 0.93259 0.96224 0.98619 0.92221 0.93320 0.92148 0.91504 0.97626 0.90274 0.97078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.91 71.98 0.64 -2.43 16 2 C -0.09 -3.21 2.47 -11.01 -0.03 -3.24 16 3 H 0.06 2.44 7.19 -2.39 -0.02 2.42 16 4 C 0.08 2.93 4.33 88.05 0.38 3.31 16 5 N -0.57 -24.46 4.23 -938.60 -3.97 -28.43 16 6 C 0.05 1.69 9.47 127.69 1.21 2.90 16 7 C 0.09 4.21 4.40 85.43 0.38 4.59 16 8 C 0.23 11.93 1.70 43.29 0.07 12.00 16 9 H 0.02 0.98 7.19 -2.39 -0.02 0.96 16 10 C -0.54 -29.96 7.82 25.60 0.20 -29.76 16 11 H 0.07 3.64 5.19 -2.91 -0.02 3.62 16 12 C 0.02 0.93 5.03 84.66 0.43 1.36 16 13 N -0.90 -51.97 12.05 21.45 0.26 -51.71 16 14 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 15 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 16 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 18 N -0.57 -25.37 4.94 -904.84 -4.47 -29.84 16 19 C 0.05 2.08 8.46 127.69 1.08 3.16 16 20 C 0.07 2.48 4.46 85.34 0.38 2.86 16 21 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.01 0.21 7.60 -2.39 -0.02 0.19 16 25 H 0.08 2.48 7.86 -2.39 -0.02 2.47 16 26 H 0.08 2.44 8.06 -2.39 -0.02 2.42 16 27 H 0.05 2.04 7.85 -2.39 -0.02 2.02 16 28 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.00 -0.20 6.29 -2.39 -0.02 -0.22 16 30 H 0.06 3.29 5.92 -2.39 -0.01 3.27 16 31 H 0.26 14.25 8.31 -92.71 -0.77 13.47 16 32 H 0.06 2.56 6.19 -2.39 -0.01 2.54 16 33 H 0.07 2.23 7.97 -2.39 -0.02 2.21 16 34 H 0.01 0.22 7.52 -2.39 -0.02 0.20 16 35 H 0.08 2.52 7.69 -2.39 -0.02 2.50 16 36 H 0.01 0.41 6.41 -2.39 -0.02 0.40 16 Total: -1.00 -61.14 268.89 -0.38 -61.52 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 1.03 Total: 7.82 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 4.74 Total: -5.26 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -8.18 Total: -109.98 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -61.14 -0.38 -61.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218996140.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.528 kcal (2) G-P(sol) polarization free energy of solvation -61.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds