Wall clock time and date at job start Mon Mar 30 2020 02:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.64339 * 2 1 4 4 C 1.50792 * 109.51716 * 120.32094 * 2 1 3 5 5 N 1.48068 * 112.87277 * 212.53759 * 4 2 1 6 6 C 1.46892 * 111.00269 * 84.34526 * 5 4 2 7 7 C 1.47745 * 113.78868 * 318.27601 * 5 4 2 8 8 C 1.50781 * 111.90689 * 318.88021 * 7 5 4 9 9 H 1.08995 * 109.74278 * 334.96759 * 8 7 5 10 10 C 1.50699 * 109.73720 * 214.26484 * 8 7 5 11 11 H 1.08004 * 120.00004 * 296.86704 * 10 8 7 12 12 C 1.37875 * 120.00002 * 116.86632 * 10 8 7 13 13 N 1.31513 * 120.00172 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 120.00058 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47212 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47008 * 119.99778 * 14 12 10 17 17 H 1.48498 * 109.46934 * 239.99576 * 14 12 10 18 18 N 1.47690 * 108.09113 * 94.62063 * 8 7 5 19 19 C 1.46901 * 111.00018 * 151.97211 * 18 8 7 20 20 C 1.40088 * 114.57238 * 278.67047 * 18 8 7 21 21 H 1.08996 * 109.47210 * 180.26773 * 1 2 3 22 22 H 1.09007 * 109.47021 * 300.26481 * 1 2 3 23 23 H 1.08996 * 109.47126 * 60.26325 * 1 2 3 24 24 H 1.08994 * 108.82596 * 91.65988 * 4 2 1 25 25 H 1.09002 * 108.72592 * 333.34169 * 4 2 1 26 26 H 1.09002 * 109.47153 * 296.35367 * 6 5 4 27 27 H 1.08999 * 109.47265 * 56.35383 * 6 5 4 28 28 H 1.08999 * 109.47446 * 176.34896 * 6 5 4 29 29 H 1.09001 * 108.99387 * 198.25726 * 7 5 4 30 30 H 1.09001 * 108.92435 * 79.46360 * 7 5 4 31 31 H 0.96993 * 120.00395 * 180.02562 * 13 12 10 32 32 H 1.08994 * 109.47151 * 181.69813 * 19 18 8 33 33 H 1.08996 * 109.46998 * 301.69405 * 19 18 8 34 34 H 1.09000 * 109.47253 * 61.69777 * 19 18 8 35 35 H 1.08995 * 109.07142 * 181.97035 * 20 18 8 36 36 H 1.09001 * 109.07581 * 300.99542 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8964 1.0265 0.0000 4 6 2.0338 -0.7175 1.2269 5 7 3.3101 -0.1640 1.7339 6 6 3.0723 0.9932 2.6068 7 6 4.2810 0.1659 0.6702 8 6 4.3106 -0.8855 -0.4102 9 1 3.9766 -1.8403 -0.0041 10 6 5.7115 -1.0227 -0.9485 11 1 6.1826 -0.1883 -1.4469 12 6 6.3917 -2.2133 -0.8049 13 7 5.8183 -3.2292 -0.1977 14 14 8.1285 -2.3831 -1.4716 15 1 8.5424 -1.1057 -2.1057 16 1 9.0565 -2.7072 -0.3585 17 1 8.1669 -3.4716 -2.4810 18 7 3.4004 -0.4576 -1.4917 19 6 3.8317 -0.9986 -2.7876 20 6 2.0472 -0.7340 -1.2576 21 1 -0.3633 -1.0276 0.0048 22 1 -0.3633 0.5180 0.8877 23 1 -0.3633 0.5097 -0.8923 24 1 2.1795 -1.7700 0.9838 25 1 1.2811 -0.6398 2.0115 26 1 2.6108 1.7947 2.0300 27 1 2.4087 0.7034 3.4216 28 1 4.0207 1.3402 3.0168 29 1 5.2746 0.2502 1.1104 30 1 4.0074 1.1231 0.2263 31 1 6.2969 -4.0667 -0.0963 32 1 3.1616 -0.6437 -3.5706 33 1 4.8475 -0.6657 -3.0003 34 1 3.8058 -2.0877 -2.7534 35 1 1.4639 -0.4149 -2.1213 36 1 1.9215 -1.8079 -1.1202 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218996215.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:31 Heat of formation + Delta-G solvation = 12.619483 kcal Electronic energy + Delta-G solvation = -15460.748398 eV Core-core repulsion = 13172.982694 eV Total energy + Delta-G solvation = -2287.765704 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.96577 -35.19974 -33.76760 -32.07377 -28.91963 -26.85254 -26.19800 -24.84368 -23.20230 -21.95201 -19.53102 -18.73624 -16.54214 -15.43905 -14.99543 -14.46860 -14.16931 -14.01693 -13.55334 -12.91072 -12.60832 -12.32795 -12.16449 -11.58513 -11.50269 -11.26353 -11.15867 -11.01986 -10.90833 -10.70661 -10.46121 -10.26803 -10.08843 -9.69195 -9.42926 -8.98317 -8.56867 -7.35705 -6.90157 -6.05921 -4.10340 3.27296 3.35969 3.40035 4.37685 4.75245 5.01766 5.25873 5.32541 5.42401 5.73239 5.82983 5.92026 5.98807 6.05464 6.12409 6.18419 6.28511 6.40311 6.44580 6.50215 6.55018 6.68482 6.76408 6.87192 6.93391 7.11255 7.32889 7.65400 7.83112 7.87593 8.02751 8.12183 8.43380 8.90558 9.06960 9.54281 11.01920 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036533 B = 0.010917 C = 0.009400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.249607 B = 2564.094533 C = 2978.004963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 H 0.072 0.928 4 C 0.066 3.934 5 N -0.552 5.552 6 C 0.032 3.968 7 C 0.080 3.920 8 C 0.199 3.801 9 H 0.062 0.938 10 C -0.508 4.508 11 H 0.059 0.941 12 C 0.068 3.932 13 N -0.886 5.886 14 Si 0.893 3.107 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.284 1.284 18 N -0.572 5.572 19 C 0.061 3.939 20 C 0.088 3.912 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.014 0.986 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.022 0.978 31 H 0.262 0.738 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.015 0.985 35 H 0.048 0.952 36 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.143 4.929 0.785 8.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.141 4.141 3 H 0.090 0.910 4 C -0.062 4.062 5 N -0.275 5.275 6 C -0.117 4.117 7 C -0.047 4.047 8 C 0.095 3.905 9 H 0.079 0.921 10 C -0.548 4.548 11 H 0.077 0.923 12 C -0.135 4.135 13 N -0.523 5.523 14 Si 0.720 3.280 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.210 1.210 18 N -0.297 5.297 19 C -0.086 4.086 20 C -0.042 4.042 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.088 0.912 25 H 0.073 0.927 26 H 0.033 0.967 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.034 0.966 35 H 0.066 0.934 36 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -6.859 4.848 1.115 8.473 hybrid contribution 0.453 -0.377 -0.744 0.949 sum -6.406 4.471 0.371 7.820 Atomic orbital electron populations 1.21749 0.95451 1.01364 1.00930 1.21619 0.94795 1.00900 0.96820 0.90976 1.21953 0.90073 0.99664 0.94517 1.62229 1.11167 1.31316 1.22836 1.22277 1.00646 0.92289 0.96522 1.22229 0.93614 0.98006 0.90878 1.19267 0.91091 0.93963 0.86224 0.92050 1.20944 0.98138 0.97980 1.37708 0.92250 1.25001 0.98101 0.95783 0.94638 1.69928 1.37332 1.03072 1.41987 0.86526 0.84527 0.78164 0.78737 1.19558 1.20890 1.21028 1.59400 1.01612 1.63566 1.05171 1.21884 1.00716 0.96813 0.89207 1.20897 0.91299 0.96175 0.95860 0.92862 0.93174 0.93056 0.91158 0.92660 0.96712 0.92661 0.92140 0.91220 0.96012 0.92823 0.95363 0.90548 0.96597 0.93357 0.97353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.91 37.16 0.33 -1.56 16 2 C -0.12 -2.12 2.44 -90.93 -0.22 -2.34 16 3 H 0.07 1.36 6.70 -51.93 -0.35 1.01 16 4 C 0.07 1.24 4.72 -4.29 -0.02 1.22 16 5 N -0.55 -11.35 4.99 -243.96 -1.22 -12.56 16 6 C 0.03 0.53 9.38 60.06 0.56 1.09 16 7 C 0.08 1.83 4.66 -4.47 -0.02 1.81 16 8 C 0.20 5.01 2.17 -69.54 -0.15 4.86 16 9 H 0.06 1.76 5.57 -51.93 -0.29 1.47 16 10 C -0.51 -13.70 5.88 -34.44 -0.20 -13.90 16 11 H 0.06 1.61 7.56 -52.48 -0.40 1.21 16 12 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 13 N -0.89 -25.56 12.62 55.43 0.70 -24.86 16 14 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 15 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 N -0.57 -12.97 4.19 -241.36 -1.01 -13.98 16 19 C 0.06 1.35 8.81 60.06 0.53 1.88 16 20 C 0.09 1.75 4.33 -6.55 -0.03 1.72 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.62 8.10 -51.93 -0.42 0.20 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.07 1.50 6.52 -51.93 -0.34 1.16 16 25 H 0.05 0.91 7.29 -51.93 -0.38 0.53 16 26 H 0.01 0.23 7.72 -51.93 -0.40 -0.17 16 27 H 0.05 0.81 7.97 -51.93 -0.41 0.40 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.70 7.71 -51.93 -0.40 1.30 16 30 H 0.02 0.49 7.07 -51.93 -0.37 0.13 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.03 0.53 7.92 -51.93 -0.41 0.12 16 33 H 0.08 1.75 6.46 -51.93 -0.34 1.41 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.88 7.77 -51.93 -0.40 0.48 16 36 H 0.01 0.18 7.59 -51.93 -0.39 -0.21 16 LS Contribution 272.23 15.07 4.10 4.10 Total: -1.00 -28.35 272.23 -7.89 -36.24 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -6.12 Total: -1.53 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 0.68 Total: -3.45 kcal Atomic # 7 Polarization: -49.87 SS G_CDS: -1.53 Total: -51.40 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.35 -7.89 -36.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218996215.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.860 kcal (2) G-P(sol) polarization free energy of solvation -28.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds