Wall clock time and date at job start Mon Mar 30 2020 02:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.64339 * 2 1 4 4 C 1.50792 * 109.51716 * 120.32094 * 2 1 3 5 5 N 1.48068 * 112.87277 * 212.53759 * 4 2 1 6 6 C 1.46892 * 111.00269 * 84.34526 * 5 4 2 7 7 C 1.47745 * 113.78868 * 318.27601 * 5 4 2 8 8 C 1.50781 * 111.90689 * 318.88021 * 7 5 4 9 9 H 1.08995 * 109.74278 * 334.96759 * 8 7 5 10 10 C 1.50699 * 109.73720 * 214.26484 * 8 7 5 11 11 H 1.08004 * 120.00004 * 296.86704 * 10 8 7 12 12 C 1.37875 * 120.00002 * 116.86632 * 10 8 7 13 13 N 1.31513 * 120.00172 * 359.97438 * 12 10 8 14 14 Si 1.86803 * 120.00058 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47212 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47008 * 119.99778 * 14 12 10 17 17 H 1.48498 * 109.46934 * 239.99576 * 14 12 10 18 18 N 1.47690 * 108.09113 * 94.62063 * 8 7 5 19 19 C 1.46901 * 111.00018 * 151.97211 * 18 8 7 20 20 C 1.40088 * 114.57238 * 278.67047 * 18 8 7 21 21 H 1.08996 * 109.47210 * 180.26773 * 1 2 3 22 22 H 1.09007 * 109.47021 * 300.26481 * 1 2 3 23 23 H 1.08996 * 109.47126 * 60.26325 * 1 2 3 24 24 H 1.08994 * 108.82596 * 91.65988 * 4 2 1 25 25 H 1.09002 * 108.72592 * 333.34169 * 4 2 1 26 26 H 1.09002 * 109.47153 * 296.35367 * 6 5 4 27 27 H 1.08999 * 109.47265 * 56.35383 * 6 5 4 28 28 H 1.08999 * 109.47446 * 176.34896 * 6 5 4 29 29 H 1.09001 * 108.99387 * 198.25726 * 7 5 4 30 30 H 1.09001 * 108.92435 * 79.46360 * 7 5 4 31 31 H 0.96993 * 120.00395 * 180.02562 * 13 12 10 32 32 H 1.08994 * 109.47151 * 181.69813 * 19 18 8 33 33 H 1.08996 * 109.46998 * 301.69405 * 19 18 8 34 34 H 1.09000 * 109.47253 * 61.69777 * 19 18 8 35 35 H 1.08995 * 109.07142 * 181.97035 * 20 18 8 36 36 H 1.09001 * 109.07581 * 300.99542 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8964 1.0265 0.0000 4 6 2.0338 -0.7175 1.2269 5 7 3.3101 -0.1640 1.7339 6 6 3.0723 0.9932 2.6068 7 6 4.2810 0.1659 0.6702 8 6 4.3106 -0.8855 -0.4102 9 1 3.9766 -1.8403 -0.0041 10 6 5.7115 -1.0227 -0.9485 11 1 6.1826 -0.1883 -1.4469 12 6 6.3917 -2.2133 -0.8049 13 7 5.8183 -3.2292 -0.1977 14 14 8.1285 -2.3831 -1.4716 15 1 8.5424 -1.1057 -2.1057 16 1 9.0565 -2.7072 -0.3585 17 1 8.1669 -3.4716 -2.4810 18 7 3.4004 -0.4576 -1.4917 19 6 3.8317 -0.9986 -2.7876 20 6 2.0472 -0.7340 -1.2576 21 1 -0.3633 -1.0276 0.0048 22 1 -0.3633 0.5180 0.8877 23 1 -0.3633 0.5097 -0.8923 24 1 2.1795 -1.7700 0.9838 25 1 1.2811 -0.6398 2.0115 26 1 2.6108 1.7947 2.0300 27 1 2.4087 0.7034 3.4216 28 1 4.0207 1.3402 3.0168 29 1 5.2746 0.2502 1.1104 30 1 4.0074 1.1231 0.2263 31 1 6.2969 -4.0667 -0.0963 32 1 3.1616 -0.6437 -3.5706 33 1 4.8475 -0.6657 -3.0003 34 1 3.8058 -2.0877 -2.7534 35 1 1.4639 -0.4149 -2.1213 36 1 1.9215 -1.8079 -1.1202 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218996215.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:30 Heat of formation + Delta-G solvation = -7.512829 kcal Electronic energy + Delta-G solvation = -15461.621401 eV Core-core repulsion = 13172.982694 eV Total energy + Delta-G solvation = -2288.638706 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.63673 -36.88766 -35.46713 -33.93457 -30.72254 -28.42812 -27.73823 -26.63082 -24.98614 -23.51090 -21.23510 -20.43098 -18.59393 -17.02955 -16.88894 -16.16888 -15.88182 -15.68590 -15.19346 -14.42847 -14.17369 -13.94143 -13.65698 -13.18818 -13.07835 -13.02668 -12.88879 -12.69116 -12.44925 -12.30749 -12.18303 -11.93374 -11.76196 -11.45290 -11.14081 -10.98766 -10.66325 -8.94203 -8.78490 -8.16078 -6.26699 1.39152 1.41383 1.53457 2.39657 3.06252 3.20799 3.51970 3.89195 3.98932 4.22851 4.47345 4.58017 4.59565 4.70990 4.73777 4.75715 4.79425 4.85872 4.90088 4.99630 5.01203 5.05156 5.17140 5.23066 5.30332 5.43395 5.47200 5.62378 5.75609 6.06369 6.34085 6.41219 6.47968 6.97510 7.06633 7.41754 8.92116 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036533 B = 0.010917 C = 0.009400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.249607 B = 2564.094533 C = 2978.004963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.111 4.111 3 H 0.065 0.935 4 C 0.069 3.931 5 N -0.575 5.575 6 C 0.034 3.966 7 C 0.094 3.906 8 C 0.203 3.797 9 H 0.021 0.979 10 C -0.516 4.516 11 H 0.055 0.945 12 C 0.019 3.981 13 N -0.923 5.923 14 Si 0.957 3.043 15 H -0.262 1.262 16 H -0.281 1.281 17 H -0.281 1.281 18 N -0.573 5.573 19 C 0.066 3.934 20 C 0.083 3.917 21 H 0.056 0.944 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.035 0.965 25 H 0.085 0.915 26 H 0.025 0.975 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.024 0.976 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.062 0.938 34 H -0.011 1.011 35 H 0.072 0.928 36 H -0.013 1.013 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.185 6.322 0.711 10.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.132 4.132 3 H 0.083 0.917 4 C -0.059 4.059 5 N -0.299 5.299 6 C -0.114 4.114 7 C -0.034 4.034 8 C 0.098 3.902 9 H 0.039 0.961 10 C -0.555 4.555 11 H 0.073 0.927 12 C -0.181 4.181 13 N -0.562 5.562 14 Si 0.783 3.217 15 H -0.186 1.186 16 H -0.206 1.206 17 H -0.206 1.206 18 N -0.297 5.297 19 C -0.081 4.081 20 C -0.047 4.047 21 H 0.075 0.925 22 H 0.089 0.911 23 H 0.084 0.916 24 H 0.053 0.947 25 H 0.103 0.897 26 H 0.044 0.956 27 H 0.098 0.902 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.008 0.992 35 H 0.090 0.910 36 H 0.004 0.996 Dipole moment (debyes) X Y Z Total from point charges -7.917 6.261 1.039 10.147 hybrid contribution 0.719 -0.799 -0.711 1.289 sum -7.198 5.462 0.328 9.042 Atomic orbital electron populations 1.21696 0.92012 1.02233 1.02721 1.21546 0.97521 0.99460 0.94639 0.91693 1.21934 0.89979 0.97712 0.96231 1.62074 1.11940 1.33453 1.22443 1.22335 1.01533 0.91162 0.96406 1.21853 0.93551 0.97125 0.90822 1.19074 0.90832 0.92884 0.87455 0.96094 1.21178 0.99161 0.97845 1.37318 0.92690 1.25762 1.01962 0.95433 0.94956 1.70072 1.38961 1.03586 1.43607 0.85516 0.79770 0.78363 0.78091 1.18621 1.20634 1.20647 1.59444 1.02679 1.62978 1.04608 1.21855 1.01009 0.95155 0.90127 1.21063 0.90014 0.95356 0.98271 0.92464 0.91091 0.91618 0.94676 0.89663 0.95612 0.90232 0.91942 0.93483 0.95774 0.92905 0.91788 0.91871 0.99206 0.90975 0.99555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.91 71.98 0.64 -2.45 16 2 C -0.11 -3.69 2.44 -10.99 -0.03 -3.72 16 3 H 0.06 2.29 6.70 -2.39 -0.02 2.27 16 4 C 0.07 2.53 4.72 85.36 0.40 2.94 16 5 N -0.57 -23.36 4.99 -925.75 -4.62 -27.98 16 6 C 0.03 1.04 9.38 127.69 1.20 2.24 16 7 C 0.09 4.38 4.66 85.42 0.40 4.78 16 8 C 0.20 10.49 2.17 43.30 0.09 10.59 16 9 H 0.02 1.27 5.57 -2.39 -0.01 1.25 16 10 C -0.52 -28.45 5.88 25.60 0.15 -28.29 16 11 H 0.05 3.02 7.56 -2.91 -0.02 3.00 16 12 C 0.02 1.04 5.46 84.65 0.46 1.51 16 13 N -0.92 -55.07 12.62 21.45 0.27 -54.80 16 14 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 15 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 18 N -0.57 -25.96 4.19 -917.51 -3.85 -29.81 16 19 C 0.07 2.91 8.81 127.69 1.12 4.04 16 20 C 0.08 3.23 4.33 88.05 0.38 3.62 16 21 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.07 1.45 8.10 -2.38 -0.02 1.43 16 23 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.03 1.53 6.52 -2.39 -0.02 1.51 16 25 H 0.09 2.58 7.29 -2.39 -0.02 2.56 16 26 H 0.03 0.75 7.72 -2.39 -0.02 0.73 16 27 H 0.08 2.09 7.97 -2.39 -0.02 2.07 16 28 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.05 2.35 7.71 -2.39 -0.02 2.33 16 30 H 0.02 1.09 7.07 -2.39 -0.02 1.07 16 31 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 32 H 0.06 2.32 7.92 -2.39 -0.02 2.30 16 33 H 0.06 2.90 6.46 -2.39 -0.02 2.89 16 34 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 35 H 0.07 2.46 7.77 -2.39 -0.02 2.44 16 36 H -0.01 -0.59 7.59 -2.39 -0.02 -0.61 16 Total: -1.00 -62.50 272.23 -0.32 -62.81 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 1.03 Total: 8.64 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: 4.83 Total: -4.76 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -8.19 Total: -112.59 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -62.50 -0.32 -62.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218996215.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.301 kcal (2) G-P(sol) polarization free energy of solvation -62.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds