Wall clock time and date at job start Mon Mar 30 2020 03:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.47209 * 2 1 4 4 C 1.48065 * 110.99794 * 297.78983 * 3 2 1 5 5 C 1.50743 * 112.93832 * 192.22134 * 4 3 2 6 6 H 1.08996 * 109.56071 * 332.81051 * 5 4 3 7 7 C 1.53001 * 109.55781 * 212.59744 * 5 4 3 8 8 C 1.54520 * 108.94259 * 92.65130 * 5 4 3 9 9 N 1.40081 * 111.50565 * 283.99087 * 8 5 4 10 10 C 1.47785 * 114.51678 * 61.47442 * 9 8 5 11 11 C 1.47741 * 111.00296 * 170.18831 * 3 2 1 12 12 H 1.08993 * 108.99403 * 205.48483 * 11 3 2 13 13 C 1.50703 * 108.99399 * 324.31157 * 11 3 2 14 14 H 1.08006 * 119.99851 * 96.35817 * 13 11 3 15 15 C 1.37873 * 120.00306 * 276.37056 * 13 11 3 16 16 N 1.31515 * 119.99632 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00399 * 179.72547 * 15 13 11 18 18 H 1.48502 * 109.47374 * 180.27249 * 17 15 13 19 19 H 1.48506 * 109.46670 * 300.26803 * 17 15 13 20 20 H 1.48498 * 109.47283 * 60.26824 * 17 15 13 21 21 H 1.08998 * 109.46737 * 60.00481 * 1 2 3 22 22 H 1.09004 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47209 * 300.00197 * 1 2 3 24 24 H 1.08995 * 109.47765 * 239.99520 * 2 1 3 25 25 H 1.09007 * 109.46997 * 119.99650 * 2 1 3 26 26 H 1.09006 * 108.78950 * 313.10934 * 4 3 2 27 27 H 1.09000 * 108.79061 * 71.32553 * 4 3 2 28 28 H 1.08997 * 109.47322 * 59.99893 * 7 5 4 29 29 H 1.08999 * 109.47019 * 180.02562 * 7 5 4 30 30 H 1.09008 * 109.47014 * 300.00002 * 7 5 4 31 31 H 1.09000 * 109.07012 * 44.51398 * 8 5 4 32 32 H 1.09001 * 109.06898 * 163.53582 * 8 5 4 33 33 H 1.00899 * 110.99581 * 188.14739 * 9 8 5 34 34 H 1.08999 * 109.71893 * 158.99070 * 10 9 8 35 35 H 1.09004 * 109.81438 * 38.25310 * 10 9 8 36 36 H 0.97001 * 120.00106 * 359.72418 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5890 2.1000 -1.2229 5 6 2.2991 3.4158 -1.4150 6 1 2.6058 3.8098 -0.4462 7 6 1.3584 4.4105 -2.0981 8 6 3.5458 3.1885 -2.2992 9 7 4.5833 2.5833 -1.5782 10 6 4.2580 1.2453 -1.0417 11 6 3.4776 1.4312 0.2350 12 1 3.7361 2.3958 0.6716 13 6 3.8532 0.3388 1.2029 14 1 4.2201 -0.6074 0.8334 15 6 3.7283 0.5472 2.5601 16 7 3.2817 1.6995 3.0100 17 14 4.1866 -0.8095 3.7595 18 1 3.9569 -0.3399 5.1495 19 1 3.3481 -2.0067 3.4966 20 1 5.6190 -1.1607 3.5859 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8935 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 1.7846 1.4660 -2.0877 27 1 0.5166 2.2855 -1.1618 28 1 0.4762 4.5621 -1.4762 29 1 1.8734 5.3611 -2.2367 30 1 1.0557 4.0168 -3.0684 31 1 3.2750 2.5484 -3.1389 32 1 3.8917 4.1491 -2.6808 33 1 5.4339 2.5588 -2.1203 34 1 5.1779 0.6986 -0.8345 35 1 3.6560 0.6939 -1.7640 36 1 3.0441 2.4041 2.3872 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218996313.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:28 Heat of formation + Delta-G solvation = 2.508996 kcal Electronic energy + Delta-G solvation = -15511.335582 eV Core-core repulsion = 13223.131455 eV Total energy + Delta-G solvation = -2288.204127 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.94071 -35.11756 -33.62719 -32.14535 -29.90987 -27.47053 -25.44109 -24.48683 -23.08563 -21.39621 -19.81865 -18.76526 -16.64916 -15.46807 -15.27838 -14.60668 -14.13700 -13.95325 -13.68648 -13.14779 -12.71966 -12.39374 -12.20072 -11.84008 -11.70181 -11.43075 -10.86251 -10.77826 -10.69298 -10.46481 -10.29581 -10.08513 -10.01045 -9.72979 -9.45717 -8.49326 -8.27898 -7.83332 -6.83405 -6.27380 -3.98524 3.46926 3.47577 3.66702 4.55928 4.78458 4.99764 5.19605 5.36635 5.50785 5.72112 5.85465 5.92744 5.96147 6.01501 6.05115 6.16801 6.25454 6.26871 6.32586 6.36293 6.51381 6.57099 6.62935 6.82527 6.88671 7.01844 7.27490 7.45870 7.88624 7.97479 8.03791 8.45311 8.64285 8.72225 8.99567 9.76970 11.14164 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032746 B = 0.011467 C = 0.010000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.867677 B = 2441.191970 C = 2799.234439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.068 3.932 3 N -0.538 5.538 4 C 0.064 3.936 5 C -0.095 4.095 6 H 0.090 0.910 7 C -0.137 4.137 8 C 0.088 3.912 9 N -0.703 5.703 10 C 0.056 3.944 11 C 0.197 3.803 12 H 0.061 0.939 13 C -0.601 4.601 14 H 0.044 0.956 15 C 0.035 3.965 16 N -0.893 5.893 17 Si 1.061 2.939 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.289 1.289 21 H 0.037 0.963 22 H 0.043 0.957 23 H 0.056 0.944 24 H 0.002 0.998 25 H 0.100 0.900 26 H 0.008 0.992 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.002 0.998 32 H 0.060 0.940 33 H 0.332 0.668 34 H 0.070 0.930 35 H 0.014 0.986 36 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.048 0.903 -8.738 9.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.060 4.060 3 N -0.264 5.264 4 C -0.064 4.064 5 C -0.115 4.115 6 H 0.108 0.892 7 C -0.195 4.195 8 C -0.043 4.043 9 N -0.334 5.334 10 C -0.074 4.074 11 C 0.092 3.908 12 H 0.079 0.921 13 C -0.641 4.641 14 H 0.062 0.938 15 C -0.174 4.174 16 N -0.527 5.527 17 Si 0.890 3.110 18 H -0.208 1.208 19 H -0.215 1.215 20 H -0.216 1.216 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.020 0.980 25 H 0.118 0.882 26 H 0.026 0.974 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.019 0.981 32 H 0.078 0.922 33 H 0.150 0.850 34 H 0.089 0.911 35 H 0.032 0.968 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.384 1.076 -6.198 6.727 hybrid contribution 0.284 -0.607 -3.322 3.389 sum -2.100 0.469 -9.520 9.760 Atomic orbital electron populations 1.21857 0.97752 0.99780 1.01029 1.21826 0.92395 0.90769 1.00966 1.62623 1.16924 1.13809 1.33065 1.21847 0.98528 0.93881 0.92181 1.21101 0.94248 0.95832 1.00281 0.89194 1.21751 0.99285 0.98460 0.99999 1.20854 0.92504 0.97475 0.93454 1.57555 1.06105 1.25579 1.44160 1.22499 1.00425 0.86505 0.97928 1.19300 0.81383 0.99303 0.90786 0.92126 1.21790 1.48710 1.00594 0.92990 0.93773 1.25665 0.93932 1.00572 0.97223 1.70661 1.38108 1.04390 1.39520 0.83671 0.76151 0.74849 0.76323 1.20824 1.21543 1.21610 0.94363 0.93820 0.92439 0.98029 0.88201 0.97421 0.92747 0.92486 0.92936 0.93456 0.98059 0.92201 0.85012 0.91129 0.96752 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.75 37.16 0.36 -2.38 16 2 C 0.07 1.52 5.08 -3.82 -0.02 1.50 16 3 N -0.54 -12.48 4.71 -229.09 -1.08 -13.56 16 4 C 0.06 1.26 3.89 -4.31 -0.02 1.24 16 5 C -0.10 -1.72 2.47 -90.95 -0.22 -1.95 16 6 H 0.09 1.90 7.19 -51.93 -0.37 1.53 16 7 C -0.14 -1.95 8.92 37.16 0.33 -1.61 16 8 C 0.09 1.51 5.41 -6.55 -0.04 1.47 16 9 N -0.70 -13.27 6.12 -118.19 -0.72 -13.99 16 10 C 0.06 1.21 5.71 -4.45 -0.03 1.18 16 11 C 0.20 4.90 1.47 -69.51 -0.10 4.79 16 12 H 0.06 1.71 5.80 -51.93 -0.30 1.40 16 13 C -0.60 -16.27 5.58 -34.44 -0.19 -16.46 16 14 H 0.04 1.20 7.79 -52.48 -0.41 0.79 16 15 C 0.03 0.97 5.39 -17.82 -0.10 0.88 16 16 N -0.89 -26.66 13.63 55.43 0.76 -25.91 16 17 Si 1.06 24.80 29.90 -169.99 -5.08 19.72 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H 0.04 0.66 6.71 -51.93 -0.35 0.31 16 22 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.00 0.03 7.73 -51.93 -0.40 -0.37 16 25 H 0.10 2.49 6.10 -51.93 -0.32 2.18 16 26 H 0.01 0.16 6.34 -51.93 -0.33 -0.17 16 27 H 0.05 1.03 6.51 -51.93 -0.34 0.69 16 28 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.00 0.03 7.60 -51.93 -0.39 -0.37 16 32 H 0.06 0.90 8.04 -51.93 -0.42 0.48 16 33 H 0.33 5.36 8.85 -39.29 -0.35 5.02 16 34 H 0.07 1.55 7.71 -51.93 -0.40 1.15 16 35 H 0.01 0.31 6.35 -51.93 -0.33 -0.02 16 36 H 0.28 8.54 6.68 -40.82 -0.27 8.27 16 LS Contribution 269.40 15.07 4.06 4.06 Total: -1.00 -28.81 269.40 -7.97 -36.78 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -5.89 Total: 4.24 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -0.02 Total: -11.34 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -1.05 Total: -53.46 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.72 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.81 -7.97 -36.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218996313.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.292 kcal (2) G-P(sol) polarization free energy of solvation -28.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds