Wall clock time and date at job start Mon Mar 30 2020 03:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46901 * 109.47209 * 2 1 4 4 C 1.48065 * 110.99794 * 297.78983 * 3 2 1 5 5 C 1.50743 * 112.93832 * 192.22134 * 4 3 2 6 6 H 1.08996 * 109.56071 * 332.81051 * 5 4 3 7 7 C 1.53001 * 109.55781 * 212.59744 * 5 4 3 8 8 C 1.54520 * 108.94259 * 92.65130 * 5 4 3 9 9 N 1.40081 * 111.50565 * 283.99087 * 8 5 4 10 10 C 1.47785 * 114.51678 * 61.47442 * 9 8 5 11 11 C 1.47741 * 111.00296 * 170.18831 * 3 2 1 12 12 H 1.08993 * 108.99403 * 205.48483 * 11 3 2 13 13 C 1.50703 * 108.99399 * 324.31157 * 11 3 2 14 14 H 1.08006 * 119.99851 * 96.35817 * 13 11 3 15 15 C 1.37873 * 120.00306 * 276.37056 * 13 11 3 16 16 N 1.31515 * 119.99632 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00399 * 179.72547 * 15 13 11 18 18 H 1.48502 * 109.47374 * 180.27249 * 17 15 13 19 19 H 1.48506 * 109.46670 * 300.26803 * 17 15 13 20 20 H 1.48498 * 109.47283 * 60.26824 * 17 15 13 21 21 H 1.08998 * 109.46737 * 60.00481 * 1 2 3 22 22 H 1.09004 * 109.46955 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47209 * 300.00197 * 1 2 3 24 24 H 1.08995 * 109.47765 * 239.99520 * 2 1 3 25 25 H 1.09007 * 109.46997 * 119.99650 * 2 1 3 26 26 H 1.09006 * 108.78950 * 313.10934 * 4 3 2 27 27 H 1.09000 * 108.79061 * 71.32553 * 4 3 2 28 28 H 1.08997 * 109.47322 * 59.99893 * 7 5 4 29 29 H 1.08999 * 109.47019 * 180.02562 * 7 5 4 30 30 H 1.09008 * 109.47014 * 300.00002 * 7 5 4 31 31 H 1.09000 * 109.07012 * 44.51398 * 8 5 4 32 32 H 1.09001 * 109.06898 * 163.53582 * 8 5 4 33 33 H 1.00899 * 110.99581 * 188.14739 * 9 8 5 34 34 H 1.08999 * 109.71893 * 158.99070 * 10 9 8 35 35 H 1.09004 * 109.81438 * 38.25310 * 10 9 8 36 36 H 0.97001 * 120.00106 * 359.72418 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5890 2.1000 -1.2229 5 6 2.2991 3.4158 -1.4150 6 1 2.6058 3.8098 -0.4462 7 6 1.3584 4.4105 -2.0981 8 6 3.5458 3.1885 -2.2992 9 7 4.5833 2.5833 -1.5782 10 6 4.2580 1.2453 -1.0417 11 6 3.4776 1.4312 0.2350 12 1 3.7361 2.3958 0.6716 13 6 3.8532 0.3388 1.2029 14 1 4.2201 -0.6074 0.8334 15 6 3.7283 0.5472 2.5601 16 7 3.2817 1.6995 3.0100 17 14 4.1866 -0.8095 3.7595 18 1 3.9569 -0.3399 5.1495 19 1 3.3481 -2.0067 3.4966 20 1 5.6190 -1.1607 3.5859 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8935 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 1.7846 1.4660 -2.0877 27 1 0.5166 2.2855 -1.1618 28 1 0.4762 4.5621 -1.4762 29 1 1.8734 5.3611 -2.2367 30 1 1.0557 4.0168 -3.0684 31 1 3.2750 2.5484 -3.1389 32 1 3.8917 4.1491 -2.6808 33 1 5.4339 2.5588 -2.1203 34 1 5.1779 0.6986 -0.8345 35 1 3.6560 0.6939 -1.7640 36 1 3.0441 2.4041 2.3872 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218996313.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:28 Heat of formation + Delta-G solvation = -18.634091 kcal Electronic energy + Delta-G solvation = -15512.252415 eV Core-core repulsion = 13223.131455 eV Total energy + Delta-G solvation = -2289.120960 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.59265 -36.79957 -35.32980 -33.97052 -31.64747 -29.09428 -27.15919 -26.05186 -24.95191 -23.12183 -21.35655 -20.58594 -18.52751 -17.14746 -16.90140 -16.29099 -15.82339 -15.60334 -15.57055 -14.77728 -14.34078 -13.88529 -13.76536 -13.51847 -13.17828 -12.94193 -12.59821 -12.51194 -12.36573 -12.07730 -11.96357 -11.87365 -11.49962 -11.44667 -11.22843 -10.53761 -10.38109 -9.38517 -8.61893 -8.49713 -6.19497 1.55804 1.62828 1.81497 2.62127 3.11961 3.34231 3.57751 3.82364 4.00052 4.13792 4.33488 4.36570 4.49638 4.56740 4.59509 4.68496 4.72310 4.76091 4.78891 4.88334 4.97399 5.03802 5.15909 5.28572 5.30634 5.43217 5.45622 5.55730 5.95540 6.22715 6.33269 6.64434 6.67714 6.77785 6.97366 7.62929 8.91052 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.032746 B = 0.011467 C = 0.010000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.867677 B = 2441.191970 C = 2799.234439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.071 3.929 3 N -0.558 5.558 4 C 0.067 3.933 5 C -0.096 4.096 6 H 0.051 0.949 7 C -0.128 4.128 8 C 0.087 3.913 9 N -0.710 5.710 10 C 0.068 3.932 11 C 0.204 3.796 12 H 0.022 0.978 13 C -0.603 4.603 14 H 0.039 0.961 15 C -0.013 4.013 16 N -0.923 5.923 17 Si 1.105 2.895 18 H -0.288 1.288 19 H -0.273 1.273 20 H -0.273 1.273 21 H 0.055 0.945 22 H 0.068 0.932 23 H 0.044 0.956 24 H 0.002 0.998 25 H 0.066 0.934 26 H 0.009 0.991 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.011 0.989 32 H 0.088 0.912 33 H 0.349 0.651 34 H 0.062 0.938 35 H 0.014 0.986 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.501 0.659 -10.353 10.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.057 4.057 3 N -0.284 5.284 4 C -0.060 4.060 5 C -0.116 4.116 6 H 0.070 0.930 7 C -0.186 4.186 8 C -0.043 4.043 9 N -0.343 5.343 10 C -0.062 4.062 11 C 0.098 3.902 12 H 0.039 0.961 13 C -0.642 4.642 14 H 0.057 0.943 15 C -0.215 4.215 16 N -0.559 5.559 17 Si 0.929 3.071 18 H -0.214 1.214 19 H -0.198 1.198 20 H -0.199 1.199 21 H 0.074 0.926 22 H 0.087 0.913 23 H 0.063 0.937 24 H 0.020 0.980 25 H 0.085 0.915 26 H 0.027 0.973 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.029 0.971 32 H 0.106 0.894 33 H 0.170 0.830 34 H 0.080 0.920 35 H 0.032 0.968 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.831 0.831 -7.850 8.386 hybrid contribution 0.425 -0.512 -2.891 2.967 sum -2.406 0.319 -10.741 11.012 Atomic orbital electron populations 1.21747 0.94834 1.01517 1.01179 1.21760 0.94801 0.89908 0.99260 1.62389 1.15825 1.14689 1.35504 1.21918 0.99275 0.94359 0.90482 1.21128 0.95603 0.95626 0.99204 0.93040 1.21677 0.98433 0.98103 1.00344 1.20944 0.91605 0.98745 0.93050 1.57435 1.07639 1.23816 1.45404 1.22162 0.99373 0.88050 0.96652 1.19052 0.82984 0.96423 0.91715 0.96058 1.22063 1.47676 1.00772 0.93684 0.94263 1.26966 0.93420 1.01593 0.99517 1.70792 1.40907 1.05130 1.39034 0.83093 0.77032 0.72982 0.74042 1.21359 1.19800 1.19860 0.92646 0.91349 0.93719 0.98011 0.91550 0.97271 0.91655 0.92467 0.91234 0.91555 0.97109 0.89387 0.83022 0.91968 0.96829 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.86 9.75 71.98 0.70 -4.15 16 2 C 0.07 3.13 5.08 86.30 0.44 3.57 16 3 N -0.56 -26.11 4.71 -878.71 -4.14 -30.25 16 4 C 0.07 2.58 3.89 85.35 0.33 2.91 16 5 C -0.10 -3.35 2.47 -11.01 -0.03 -3.38 16 6 H 0.05 2.21 7.19 -2.39 -0.02 2.19 16 7 C -0.13 -3.27 8.92 71.98 0.64 -2.63 16 8 C 0.09 2.78 5.41 88.05 0.48 3.25 16 9 N -0.71 -26.08 6.12 -527.84 -3.23 -29.30 16 10 C 0.07 2.93 5.71 85.41 0.49 3.42 16 11 C 0.20 10.37 1.47 43.29 0.06 10.44 16 12 H 0.02 1.26 5.80 -2.39 -0.01 1.25 16 13 C -0.60 -33.32 5.58 25.60 0.14 -33.18 16 14 H 0.04 2.16 7.79 -2.91 -0.02 2.13 16 15 C -0.01 -0.73 5.39 84.65 0.46 -0.28 16 16 N -0.92 -56.96 13.63 21.45 0.29 -56.67 16 17 Si 1.11 50.40 29.90 68.60 2.05 52.45 16 18 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 20 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 21 H 0.05 1.79 6.71 -2.39 -0.02 1.77 16 22 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.00 0.08 7.73 -2.39 -0.02 0.06 16 25 H 0.07 3.37 6.10 -2.38 -0.01 3.35 16 26 H 0.01 0.35 6.34 -2.38 -0.02 0.34 16 27 H 0.07 2.35 6.51 -2.39 -0.02 2.33 16 28 H 0.06 1.46 8.09 -2.39 -0.02 1.44 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.01 0.34 7.60 -2.39 -0.02 0.32 16 32 H 0.09 2.34 8.04 -2.39 -0.02 2.32 16 33 H 0.35 10.69 8.85 -89.69 -0.79 9.89 16 34 H 0.06 2.75 7.71 -2.39 -0.02 2.73 16 35 H 0.01 0.59 6.35 -2.38 -0.02 0.57 16 36 H 0.26 16.85 6.68 -92.71 -0.62 16.23 16 Total: -1.00 -63.64 269.40 -0.90 -64.54 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.41 Total: 19.26 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: 3.71 Total: -20.03 kcal Atomic # 7 Polarization: -109.15 SS G_CDS: -7.07 Total: -116.22 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.05 Total: 52.45 kcal Total: -63.64 -0.90 -64.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218996313.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.908 kcal (2) G-P(sol) polarization free energy of solvation -63.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds