Wall clock time and date at job start Mon Mar 30 2020 03:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47070 * 2 1 4 4 C 1.48061 * 111.00030 * 317.68706 * 3 2 1 5 5 C 1.53696 * 112.47323 * 192.20172 * 4 3 2 6 6 C 1.50798 * 112.10067 * 318.55078 * 5 4 3 7 7 H 1.09002 * 109.79432 * 332.74665 * 6 5 4 8 8 C 1.53006 * 109.63246 * 212.25275 * 6 5 4 9 9 N 1.47911 * 108.50130 * 92.54652 * 6 5 4 10 10 C 1.40013 * 114.06799 * 280.08244 * 9 6 5 11 11 H 1.08998 * 108.95747 * 301.13296 * 10 9 6 12 12 C 1.50698 * 108.95963 * 182.39067 * 10 9 6 13 13 H 1.07997 * 119.99957 * 240.00317 * 12 10 9 14 14 C 1.37875 * 120.00018 * 59.99623 * 12 10 9 15 15 N 1.31517 * 120.00092 * 0.02562 * 14 12 10 16 16 Si 1.86807 * 119.99973 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47055 * 60.00107 * 16 14 12 18 18 H 1.48493 * 109.47134 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47109 * 300.00358 * 16 14 12 20 20 C 1.44573 * 110.99964 * 189.99642 * 3 2 1 21 21 H 1.09003 * 109.47226 * 300.00288 * 1 2 3 22 22 H 1.09000 * 109.47207 * 60.00555 * 1 2 3 23 23 H 1.09002 * 109.47308 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47226 * 239.99712 * 2 1 3 25 25 H 1.09005 * 109.47142 * 119.99909 * 2 1 3 26 26 H 1.09000 * 108.87940 * 312.97001 * 4 3 2 27 27 H 1.08998 * 108.88462 * 71.52658 * 4 3 2 28 28 H 1.08997 * 108.95775 * 197.87327 * 5 4 3 29 29 H 1.09006 * 108.95683 * 79.22377 * 5 4 3 30 30 H 1.09001 * 109.47002 * 300.98913 * 8 6 5 31 31 H 1.08993 * 109.46955 * 60.99351 * 8 6 5 32 32 H 1.09000 * 109.47050 * 180.99179 * 8 6 5 33 33 H 1.00900 * 110.99858 * 153.79191 * 9 6 5 34 34 H 0.97000 * 119.99712 * 180.02562 * 15 14 12 35 35 H 1.09008 * 109.57430 * 100.53997 * 20 3 2 36 36 H 1.08993 * 109.67943 * 340.22223 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.2328 2.2260 -0.9305 5 6 1.8899 3.5915 -1.1868 6 6 2.4559 4.1944 0.0742 7 1 1.9023 3.8286 0.9390 8 6 2.3534 5.7195 0.0058 9 7 3.8758 3.7963 0.1885 10 6 4.0676 2.5011 0.6845 11 1 3.6114 2.4289 1.6718 12 6 5.5463 2.2383 0.8086 13 1 5.9985 1.4267 0.2581 14 6 6.3218 3.0340 1.6249 15 7 5.7710 4.0222 2.2956 16 14 8.1549 2.7087 1.7781 17 1 8.7932 2.8343 0.4432 18 1 8.7567 3.6959 2.7099 19 1 8.3719 1.3367 2.3033 20 6 3.4455 1.4304 -0.2343 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.1299 1.7003 -1.8798 27 1 0.2412 2.3871 -0.5077 28 1 1.1448 4.2709 -1.6006 29 1 2.6944 3.4669 -1.9117 30 1 2.9020 6.0819 -0.8636 31 1 1.3063 6.0098 -0.0783 32 1 2.7792 6.1532 0.9106 33 1 4.3982 4.4709 0.7272 34 1 6.3168 4.5822 2.8696 35 1 3.6364 1.6877 -1.2762 36 1 3.8852 0.4582 -0.0119 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218996853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:23 Heat of formation + Delta-G solvation = 3.456382 kcal Electronic energy + Delta-G solvation = -15229.862341 eV Core-core repulsion = 12941.699296 eV Total energy + Delta-G solvation = -2288.163046 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.58503 -35.41348 -33.42185 -31.08670 -30.38923 -27.88953 -26.18490 -24.39582 -23.10499 -21.09465 -19.34458 -18.67247 -16.49339 -15.51082 -14.92823 -14.76996 -14.24811 -14.14198 -13.35901 -13.24289 -12.68381 -12.19565 -11.88183 -11.66856 -11.53068 -11.31255 -11.15601 -11.02276 -10.85130 -10.55171 -10.47338 -10.18981 -9.97712 -9.80280 -9.54097 -8.97954 -8.50871 -7.40136 -6.54320 -6.02157 -4.05621 3.34504 3.38718 3.41669 4.40610 4.59620 5.20575 5.37967 5.44742 5.50088 5.64023 5.70176 5.77391 5.91722 5.98592 6.06317 6.23016 6.28882 6.31425 6.39004 6.41201 6.48696 6.55472 6.71997 6.84375 6.88772 7.03976 7.17555 7.64496 7.81756 7.90159 8.11672 8.32978 8.87729 9.32954 9.44259 9.63479 11.07121 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031514 B = 0.010455 C = 0.008400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.276542 B = 2677.545551 C = 3332.386809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 N -0.551 5.551 4 C 0.068 3.932 5 C -0.112 4.112 6 C 0.089 3.911 7 H 0.037 0.963 8 C -0.145 4.145 9 N -0.687 5.687 10 C 0.237 3.763 11 H -0.007 1.007 12 C -0.504 4.504 13 H 0.056 0.944 14 C 0.064 3.936 15 N -0.903 5.903 16 Si 0.897 3.103 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.072 3.928 21 H 0.061 0.939 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.023 0.977 25 H 0.070 0.930 26 H 0.019 0.981 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.368 0.632 34 H 0.264 0.736 35 H 0.033 0.967 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.345 -2.184 -4.713 9.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.071 4.071 3 N -0.276 5.276 4 C -0.059 4.059 5 C -0.151 4.151 6 C -0.021 4.021 7 H 0.055 0.945 8 C -0.202 4.202 9 N -0.328 5.328 10 C 0.126 3.874 11 H 0.010 0.990 12 C -0.544 4.544 13 H 0.074 0.926 14 C -0.137 4.137 15 N -0.543 5.543 16 Si 0.726 3.274 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.056 4.056 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.089 0.911 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.196 0.804 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.331 -2.066 -4.755 9.812 hybrid contribution 0.921 -0.364 0.216 1.014 sum -7.409 -2.430 -4.540 9.023 Atomic orbital electron populations 1.21920 0.95965 1.00998 1.02138 1.22073 0.94776 0.90250 1.00047 1.60939 1.05377 1.08364 1.52965 1.22341 0.96886 0.93787 0.92902 1.21544 0.99465 0.94583 0.99477 1.20982 0.92672 0.92676 0.95763 0.94496 1.21902 0.99939 0.96647 1.01757 1.58306 1.06303 1.06776 1.61382 1.17802 0.93523 0.85265 0.90834 0.98989 1.21261 0.93087 1.14368 1.25684 0.92568 1.24978 0.98676 0.95073 0.94944 1.69628 1.35842 1.19102 1.29757 0.86575 0.85202 0.77830 0.77837 1.20263 1.21367 1.20421 1.22174 0.84282 1.00181 0.98971 0.92037 0.92824 0.92949 0.95890 0.91129 0.96283 0.92069 0.92718 0.91457 0.92771 0.93636 0.92948 0.80414 0.92636 0.94841 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.08 37.16 0.34 -1.68 16 2 C 0.06 0.91 5.68 -3.83 -0.02 0.89 16 3 N -0.55 -10.70 4.11 -234.31 -0.96 -11.66 16 4 C 0.07 1.17 4.18 -2.82 -0.01 1.16 16 5 C -0.11 -2.02 4.92 -27.47 -0.14 -2.16 16 6 C 0.09 1.84 2.77 -68.26 -0.19 1.65 16 7 H 0.04 0.84 7.59 -51.93 -0.39 0.44 16 8 C -0.14 -2.58 9.01 37.16 0.33 -2.25 16 9 N -0.69 -16.93 5.65 -105.20 -0.59 -17.52 16 10 C 0.24 6.14 2.14 -71.80 -0.15 5.99 16 11 H -0.01 -0.22 8.07 -51.93 -0.42 -0.63 16 12 C -0.50 -14.06 8.62 -34.44 -0.30 -14.36 16 13 H 0.06 1.54 7.71 -52.49 -0.40 1.14 16 14 C 0.06 1.77 5.27 -17.82 -0.09 1.68 16 15 N -0.90 -25.65 11.44 55.43 0.63 -25.02 16 16 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.07 1.60 4.71 -4.44 -0.02 1.58 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 22 H 0.05 0.68 6.43 -51.93 -0.33 0.34 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.02 0.36 8.07 -51.93 -0.42 -0.06 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.02 0.31 7.78 -51.93 -0.40 -0.10 16 27 H 0.06 0.97 7.03 -51.93 -0.37 0.60 16 28 H 0.05 0.84 7.72 -51.93 -0.40 0.44 16 29 H 0.07 1.32 7.23 -51.93 -0.38 0.94 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.04 0.69 8.11 -51.93 -0.42 0.26 16 32 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 33 H 0.37 9.85 5.96 -39.29 -0.23 9.62 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.03 0.76 6.93 -51.92 -0.36 0.40 16 36 H 0.06 1.25 7.45 -51.93 -0.39 0.87 16 LS Contribution 273.52 15.07 4.12 4.12 Total: -1.00 -28.23 273.52 -8.24 -36.47 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.17 Total: 4.67 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -0.25 Total: -7.49 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: -0.92 Total: -54.20 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.23 -8.24 -36.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218996853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.931 kcal (2) G-P(sol) polarization free energy of solvation -28.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds