Wall clock time and date at job start Mon Mar 30 2020 03:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47070 * 2 1 4 4 C 1.48061 * 111.00030 * 317.68706 * 3 2 1 5 5 C 1.53696 * 112.47323 * 192.20172 * 4 3 2 6 6 C 1.50798 * 112.10067 * 318.55078 * 5 4 3 7 7 H 1.09002 * 109.79432 * 332.74665 * 6 5 4 8 8 C 1.53006 * 109.63246 * 212.25275 * 6 5 4 9 9 N 1.47911 * 108.50130 * 92.54652 * 6 5 4 10 10 C 1.40013 * 114.06799 * 280.08244 * 9 6 5 11 11 H 1.08998 * 108.95747 * 301.13296 * 10 9 6 12 12 C 1.50698 * 108.95963 * 182.39067 * 10 9 6 13 13 H 1.07997 * 119.99957 * 240.00317 * 12 10 9 14 14 C 1.37875 * 120.00018 * 59.99623 * 12 10 9 15 15 N 1.31517 * 120.00092 * 0.02562 * 14 12 10 16 16 Si 1.86807 * 119.99973 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47055 * 60.00107 * 16 14 12 18 18 H 1.48493 * 109.47134 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47109 * 300.00358 * 16 14 12 20 20 C 1.44573 * 110.99964 * 189.99642 * 3 2 1 21 21 H 1.09003 * 109.47226 * 300.00288 * 1 2 3 22 22 H 1.09000 * 109.47207 * 60.00555 * 1 2 3 23 23 H 1.09002 * 109.47308 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47226 * 239.99712 * 2 1 3 25 25 H 1.09005 * 109.47142 * 119.99909 * 2 1 3 26 26 H 1.09000 * 108.87940 * 312.97001 * 4 3 2 27 27 H 1.08998 * 108.88462 * 71.52658 * 4 3 2 28 28 H 1.08997 * 108.95775 * 197.87327 * 5 4 3 29 29 H 1.09006 * 108.95683 * 79.22377 * 5 4 3 30 30 H 1.09001 * 109.47002 * 300.98913 * 8 6 5 31 31 H 1.08993 * 109.46955 * 60.99351 * 8 6 5 32 32 H 1.09000 * 109.47050 * 180.99179 * 8 6 5 33 33 H 1.00900 * 110.99858 * 153.79191 * 9 6 5 34 34 H 0.97000 * 119.99712 * 180.02562 * 15 14 12 35 35 H 1.09008 * 109.57430 * 100.53997 * 20 3 2 36 36 H 1.08993 * 109.67943 * 340.22223 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.2328 2.2260 -0.9305 5 6 1.8899 3.5915 -1.1868 6 6 2.4559 4.1944 0.0742 7 1 1.9023 3.8286 0.9390 8 6 2.3534 5.7195 0.0058 9 7 3.8758 3.7963 0.1885 10 6 4.0676 2.5011 0.6845 11 1 3.6114 2.4289 1.6718 12 6 5.5463 2.2383 0.8086 13 1 5.9985 1.4267 0.2581 14 6 6.3218 3.0340 1.6249 15 7 5.7710 4.0222 2.2956 16 14 8.1549 2.7087 1.7781 17 1 8.7932 2.8343 0.4432 18 1 8.7567 3.6959 2.7099 19 1 8.3719 1.3367 2.3033 20 6 3.4455 1.4304 -0.2343 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.1299 1.7003 -1.8798 27 1 0.2412 2.3871 -0.5077 28 1 1.1448 4.2709 -1.6006 29 1 2.6944 3.4669 -1.9117 30 1 2.9020 6.0819 -0.8636 31 1 1.3063 6.0098 -0.0783 32 1 2.7792 6.1532 0.9106 33 1 4.3982 4.4709 0.7272 34 1 6.3168 4.5822 2.8696 35 1 3.6364 1.6877 -1.2762 36 1 3.8852 0.4582 -0.0119 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218996853.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:23 Heat of formation + Delta-G solvation = -16.027253 kcal Electronic energy + Delta-G solvation = -15230.707215 eV Core-core repulsion = 12941.699296 eV Total energy + Delta-G solvation = -2289.007919 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.21421 -37.03086 -35.28041 -32.99761 -31.76075 -29.38981 -28.08852 -26.14744 -24.57311 -22.63988 -21.18668 -20.19791 -18.54636 -17.18075 -16.63193 -16.39170 -15.91411 -15.77801 -15.12044 -14.68597 -14.14071 -13.86631 -13.54070 -13.22641 -13.01097 -12.86158 -12.74866 -12.56541 -12.42752 -12.29632 -12.12618 -11.77227 -11.52930 -11.44644 -11.34097 -10.95155 -10.60678 -8.91946 -8.53764 -8.13464 -6.26304 1.42705 1.44728 1.52364 2.42997 3.10412 3.13506 3.90505 4.14209 4.17318 4.23116 4.28272 4.48408 4.52171 4.56966 4.67214 4.72450 4.80300 4.90465 4.95718 4.99508 5.05173 5.07056 5.20893 5.30927 5.34740 5.41239 5.51253 5.62250 5.84483 6.18321 6.39500 6.47246 6.73668 7.30551 7.42778 7.48770 8.94007 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031514 B = 0.010455 C = 0.008400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.276542 B = 2677.545551 C = 3332.386809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 N -0.571 5.571 4 C 0.068 3.932 5 C -0.108 4.108 6 C 0.086 3.914 7 H 0.013 0.987 8 C -0.137 4.137 9 N -0.694 5.694 10 C 0.242 3.758 11 H -0.059 1.059 12 C -0.532 4.532 13 H 0.053 0.947 14 C 0.018 3.982 15 N -0.925 5.925 16 Si 0.963 3.037 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.273 1.273 20 C 0.090 3.910 21 H 0.054 0.946 22 H 0.063 0.937 23 H 0.076 0.924 24 H 0.030 0.970 25 H 0.060 0.940 26 H 0.037 0.963 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.035 0.965 33 H 0.352 0.648 34 H 0.265 0.735 35 H 0.029 0.971 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.307 -2.371 -5.893 11.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 N -0.297 5.297 4 C -0.059 4.059 5 C -0.146 4.146 6 C -0.023 4.023 7 H 0.031 0.969 8 C -0.195 4.195 9 N -0.331 5.331 10 C 0.131 3.869 11 H -0.042 1.042 12 C -0.571 4.571 13 H 0.072 0.928 14 C -0.181 4.181 15 N -0.566 5.566 16 Si 0.789 3.211 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.199 1.199 20 C -0.039 4.039 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.095 0.905 24 H 0.048 0.952 25 H 0.078 0.922 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.177 0.823 34 H 0.074 0.926 35 H 0.047 0.953 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.323 -2.267 -5.953 11.291 hybrid contribution 1.171 -0.301 0.610 1.354 sum -8.152 -2.568 -5.342 10.079 Atomic orbital electron populations 1.21849 0.93178 1.02717 1.02299 1.22152 0.97056 0.88299 0.99908 1.60825 1.03881 1.10743 1.54259 1.22426 0.97041 0.93005 0.93414 1.21506 0.99844 0.95868 0.97398 1.21127 0.90034 0.94861 0.96299 0.96878 1.21848 1.02185 0.94243 1.01184 1.58338 1.08756 1.05783 1.60259 1.17682 0.92698 0.87162 0.89358 1.04175 1.21614 0.94516 1.14706 1.26297 0.92846 1.25764 1.03080 0.94760 0.94468 1.69761 1.37308 1.19618 1.29952 0.85539 0.79783 0.77838 0.77961 1.19679 1.20789 1.19870 1.21784 0.86365 0.98312 0.97429 0.92656 0.91766 0.90533 0.95159 0.92178 0.94484 0.90124 0.89130 0.93068 0.92233 0.90152 0.94562 0.82319 0.92574 0.95303 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.08 71.98 0.65 -2.72 16 2 C 0.05 1.65 5.68 86.30 0.49 2.14 16 3 N -0.57 -21.90 4.11 -895.23 -3.68 -25.58 16 4 C 0.07 2.17 4.18 86.31 0.36 2.53 16 5 C -0.11 -3.68 4.92 30.11 0.15 -3.53 16 6 C 0.09 3.54 2.77 44.01 0.12 3.67 16 7 H 0.01 0.60 7.59 -2.39 -0.02 0.59 16 8 C -0.14 -4.71 9.01 71.98 0.65 -4.07 16 9 N -0.69 -35.04 5.65 -486.74 -2.75 -37.79 16 10 C 0.24 13.05 2.14 45.82 0.10 13.15 16 11 H -0.06 -3.69 8.07 -2.39 -0.02 -3.70 16 12 C -0.53 -30.53 8.62 25.60 0.22 -30.31 16 13 H 0.05 3.00 7.71 -2.91 -0.02 2.98 16 14 C 0.02 1.00 5.27 84.65 0.45 1.44 16 15 N -0.93 -53.98 11.44 21.45 0.25 -53.74 16 16 Si 0.96 44.47 29.54 68.60 2.03 46.49 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 20 C 0.09 4.07 4.71 87.15 0.41 4.49 16 21 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.06 1.39 6.43 -2.39 -0.02 1.37 16 23 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.03 0.90 8.07 -2.39 -0.02 0.88 16 25 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.04 1.07 7.78 -2.39 -0.02 1.05 16 27 H 0.08 2.29 7.03 -2.39 -0.02 2.28 16 28 H 0.09 2.45 7.72 -2.39 -0.02 2.43 16 29 H 0.05 1.92 7.23 -2.38 -0.02 1.90 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.08 2.19 8.11 -2.39 -0.02 2.17 16 32 H 0.04 1.34 8.13 -2.39 -0.02 1.32 16 33 H 0.35 19.48 5.96 -89.69 -0.53 18.95 16 34 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 35 H 0.03 1.31 6.93 -2.38 -0.02 1.29 16 36 H 0.05 2.27 7.45 -2.39 -0.02 2.25 16 Total: -1.00 -62.54 273.52 -0.06 -62.61 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.50 Total: 21.21 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 3.60 Total: -13.21 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -6.19 Total: -117.10 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -62.54 -0.06 -62.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218996853.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.578 kcal (2) G-P(sol) polarization free energy of solvation -62.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds