Wall clock time and date at job start Mon Mar 30 2020 03:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 109.47553 * 2 1 4 4 C 1.40083 * 110.99696 * 66.96662 * 3 2 1 5 5 C 1.54515 * 111.51144 * 188.15090 * 4 3 2 6 6 C 1.50744 * 108.94596 * 283.99261 * 5 4 3 7 7 H 1.09004 * 108.78775 * 331.75882 * 6 5 4 8 8 C 1.52992 * 108.79151 * 213.42759 * 6 5 4 9 9 N 1.48076 * 112.93419 * 92.64487 * 6 5 4 10 10 C 1.47735 * 113.78983 * 318.28946 * 9 6 5 11 11 C 1.47683 * 111.00369 * 195.61111 * 3 2 1 12 12 H 1.08998 * 109.73820 * 271.63844 * 11 3 2 13 13 C 1.50702 * 109.73629 * 32.34327 * 11 3 2 14 14 H 1.07995 * 120.00377 * 56.48276 * 13 11 3 15 15 C 1.37875 * 119.99643 * 236.48755 * 13 11 3 16 16 N 1.31518 * 120.00071 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00007 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47190 * 89.99791 * 17 15 13 19 19 H 1.48500 * 109.47164 * 209.99991 * 17 15 13 20 20 H 1.48503 * 109.46954 * 329.99608 * 17 15 13 21 21 H 1.08993 * 109.47351 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47201 * 59.99558 * 1 2 3 23 23 H 1.09000 * 109.46732 * 299.99740 * 1 2 3 24 24 H 1.08998 * 109.47201 * 120.00442 * 2 1 3 25 25 H 1.09000 * 109.46732 * 240.00259 * 2 1 3 26 26 H 1.09004 * 109.07562 * 308.67424 * 4 3 2 27 27 H 1.09001 * 109.07118 * 67.63397 * 4 3 2 28 28 H 1.09003 * 109.56066 * 43.83280 * 5 4 3 29 29 H 1.09005 * 109.56094 * 164.04719 * 5 4 3 30 30 H 1.08992 * 109.47575 * 59.99870 * 8 6 5 31 31 H 1.09006 * 109.46999 * 179.97438 * 8 6 5 32 32 H 1.08996 * 109.47221 * 299.99453 * 8 6 5 33 33 H 1.00905 * 110.99629 * 192.21944 * 9 6 5 34 34 H 1.09000 * 108.99614 * 79.50348 * 10 9 6 35 35 H 1.09003 * 108.99140 * 198.32793 * 10 9 6 36 36 H 0.96997 * 119.99930 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7046 2.0288 1.2036 5 6 2.0314 3.5377 1.1414 6 6 3.5222 3.7213 1.2690 7 1 3.9295 2.8932 1.8491 8 6 3.7956 5.0275 2.0171 9 7 4.2116 3.7708 -0.0405 10 6 3.7122 2.7789 -1.0148 11 6 3.4481 1.4413 -0.3710 12 1 4.0647 1.3341 0.5214 13 6 3.7648 0.3361 -1.3453 14 1 3.2135 0.2575 -2.2707 15 6 4.7583 -0.5748 -1.0553 16 7 5.4300 -0.4789 0.0713 17 14 5.1514 -1.9444 -2.2633 18 1 6.1955 -1.4824 -3.2127 19 1 5.6472 -3.1315 -1.5215 20 1 3.9239 -2.3081 -3.0158 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.8932 -0.5138 -0.8900 26 1 0.6412 1.9027 1.4072 27 1 2.2773 1.5734 2.0116 28 1 1.6938 3.9452 0.1884 29 1 1.5273 4.0542 1.9582 30 1 3.3431 4.9806 3.0075 31 1 4.8716 5.1712 2.1161 32 1 3.3670 5.8613 1.4610 33 1 5.2112 3.6938 0.0740 34 1 2.7868 3.1494 -1.4557 35 1 4.4541 2.6514 -1.8032 36 1 6.1292 -1.1195 0.2752 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218997021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:12 Heat of formation + Delta-G solvation = 4.306080 kcal Electronic energy + Delta-G solvation = -15407.219762 eV Core-core repulsion = 13119.093562 eV Total energy + Delta-G solvation = -2288.126200 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.77641 -35.17825 -33.24503 -31.40467 -30.22506 -27.97494 -26.30870 -24.12200 -22.79090 -21.33922 -19.36874 -18.73826 -16.54365 -15.53808 -15.11769 -14.52749 -14.20758 -14.02810 -13.59897 -12.94741 -12.44468 -12.26869 -12.00724 -11.53034 -11.41130 -11.29894 -11.03362 -10.94819 -10.78027 -10.61319 -10.47240 -10.04878 -9.87855 -9.77541 -9.40907 -9.02075 -8.68581 -7.54707 -6.84103 -6.14523 -4.16288 3.23381 3.30939 3.34154 4.32438 4.89703 5.04972 5.33210 5.45753 5.52427 5.80456 5.97996 6.01025 6.07126 6.19808 6.25206 6.27359 6.41265 6.42958 6.51313 6.64192 6.68307 6.68441 6.85906 6.91989 7.02092 7.17549 7.43709 7.62402 7.75846 7.87324 8.06874 8.27328 8.45783 8.89871 8.98902 9.46450 10.93244 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029043 B = 0.012116 C = 0.009493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.858392 B = 2310.451675 C = 2948.886801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.068 3.932 3 N -0.558 5.558 4 C 0.075 3.925 5 C -0.112 4.112 6 C 0.088 3.912 7 H 0.033 0.967 8 C -0.139 4.139 9 N -0.701 5.701 10 C 0.076 3.924 11 C 0.174 3.826 12 H 0.049 0.951 13 C -0.506 4.506 14 H 0.061 0.939 15 C 0.065 3.935 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.271 1.271 21 H 0.044 0.956 22 H 0.053 0.947 23 H 0.040 0.960 24 H 0.014 0.986 25 H 0.098 0.902 26 H 0.055 0.945 27 H 0.003 0.997 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.333 0.667 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 4.637 2.284 7.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.060 4.060 3 N -0.284 5.284 4 C -0.056 4.056 5 C -0.150 4.150 6 C -0.022 4.022 7 H 0.051 0.949 8 C -0.197 4.197 9 N -0.332 5.332 10 C -0.053 4.053 11 C 0.068 3.932 12 H 0.067 0.933 13 C -0.545 4.545 14 H 0.080 0.920 15 C -0.138 4.138 16 N -0.531 5.531 17 Si 0.721 3.279 18 H -0.205 1.205 19 H -0.213 1.213 20 H -0.196 1.196 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.059 0.941 24 H 0.032 0.968 25 H 0.116 0.884 26 H 0.073 0.927 27 H 0.021 0.979 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.149 0.851 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.221 5.283 1.836 7.651 hybrid contribution 1.135 -2.043 0.511 2.392 sum -4.086 3.240 2.347 5.718 Atomic orbital electron populations 1.21913 0.97904 0.99852 1.00939 1.21839 0.91959 0.90126 1.02046 1.59378 1.21821 1.15449 1.31702 1.20985 0.98981 0.93809 0.91787 1.21563 0.94926 0.96369 1.02122 1.21112 0.94599 0.95924 0.90539 0.94851 1.21856 1.00945 0.98138 0.98736 1.60595 1.08208 1.53783 1.10572 1.22035 0.99362 0.90260 0.93681 1.19810 0.82919 0.93400 0.97047 0.93308 1.20970 1.17878 1.11410 1.04282 0.92047 1.25018 0.95970 0.97641 0.95155 1.69902 1.23085 1.36900 1.23229 0.86561 0.78852 0.81434 0.81034 1.20467 1.21277 1.19607 0.93705 0.92747 0.94073 0.96788 0.88388 0.92717 0.97887 0.90584 0.92112 0.93234 0.93371 0.92518 0.85098 0.92358 0.91799 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.84 37.16 0.37 -2.22 16 2 C 0.07 1.47 5.28 -3.83 -0.02 1.45 16 3 N -0.56 -12.37 3.95 -233.08 -0.92 -13.30 16 4 C 0.07 1.49 4.83 -6.55 -0.03 1.45 16 5 C -0.11 -1.99 5.18 -27.07 -0.14 -2.13 16 6 C 0.09 1.62 2.57 -68.20 -0.18 1.45 16 7 H 0.03 0.71 6.52 -51.93 -0.34 0.37 16 8 C -0.14 -2.08 9.22 37.15 0.34 -1.74 16 9 N -0.70 -13.90 6.51 -107.67 -0.70 -14.60 16 10 C 0.08 1.68 5.66 -4.48 -0.03 1.66 16 11 C 0.17 4.26 2.17 -69.55 -0.15 4.11 16 12 H 0.05 1.37 5.57 -51.93 -0.29 1.08 16 13 C -0.51 -13.33 5.60 -34.44 -0.19 -13.53 16 14 H 0.06 1.63 7.64 -52.49 -0.40 1.23 16 15 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -25.26 12.62 55.43 0.70 -24.56 16 17 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.04 0.67 6.39 -51.93 -0.33 0.34 16 24 H 0.01 0.32 8.10 -51.93 -0.42 -0.10 16 25 H 0.10 2.32 5.79 -51.93 -0.30 2.02 16 26 H 0.05 0.99 5.98 -51.93 -0.31 0.68 16 27 H 0.00 0.07 7.60 -51.93 -0.39 -0.32 16 28 H 0.08 1.44 7.19 -51.93 -0.37 1.06 16 29 H 0.06 0.93 7.69 -51.93 -0.40 0.53 16 30 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.33 6.53 8.91 -39.29 -0.35 6.18 16 34 H 0.06 1.31 7.20 -51.93 -0.37 0.94 16 35 H 0.06 1.48 7.71 -51.93 -0.40 1.08 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 270.99 15.07 4.08 4.08 Total: -1.00 -27.13 270.99 -7.91 -35.05 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.93 Total: 5.42 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -0.13 Total: -7.85 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: -0.92 Total: -52.45 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -27.13 -7.91 -35.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218997021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.352 kcal (2) G-P(sol) polarization free energy of solvation -27.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds