Wall clock time and date at job start Mon Mar 30 2020 03:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 109.47553 * 2 1 4 4 C 1.40083 * 110.99696 * 66.96662 * 3 2 1 5 5 C 1.54515 * 111.51144 * 188.15090 * 4 3 2 6 6 C 1.50744 * 108.94596 * 283.99261 * 5 4 3 7 7 H 1.09004 * 108.78775 * 331.75882 * 6 5 4 8 8 C 1.52992 * 108.79151 * 213.42759 * 6 5 4 9 9 N 1.48076 * 112.93419 * 92.64487 * 6 5 4 10 10 C 1.47735 * 113.78983 * 318.28946 * 9 6 5 11 11 C 1.47683 * 111.00369 * 195.61111 * 3 2 1 12 12 H 1.08998 * 109.73820 * 271.63844 * 11 3 2 13 13 C 1.50702 * 109.73629 * 32.34327 * 11 3 2 14 14 H 1.07995 * 120.00377 * 56.48276 * 13 11 3 15 15 C 1.37875 * 119.99643 * 236.48755 * 13 11 3 16 16 N 1.31518 * 120.00071 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00007 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47190 * 89.99791 * 17 15 13 19 19 H 1.48500 * 109.47164 * 209.99991 * 17 15 13 20 20 H 1.48503 * 109.46954 * 329.99608 * 17 15 13 21 21 H 1.08993 * 109.47351 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47201 * 59.99558 * 1 2 3 23 23 H 1.09000 * 109.46732 * 299.99740 * 1 2 3 24 24 H 1.08998 * 109.47201 * 120.00442 * 2 1 3 25 25 H 1.09000 * 109.46732 * 240.00259 * 2 1 3 26 26 H 1.09004 * 109.07562 * 308.67424 * 4 3 2 27 27 H 1.09001 * 109.07118 * 67.63397 * 4 3 2 28 28 H 1.09003 * 109.56066 * 43.83280 * 5 4 3 29 29 H 1.09005 * 109.56094 * 164.04719 * 5 4 3 30 30 H 1.08992 * 109.47575 * 59.99870 * 8 6 5 31 31 H 1.09006 * 109.46999 * 179.97438 * 8 6 5 32 32 H 1.08996 * 109.47221 * 299.99453 * 8 6 5 33 33 H 1.00905 * 110.99629 * 192.21944 * 9 6 5 34 34 H 1.09000 * 108.99614 * 79.50348 * 10 9 6 35 35 H 1.09003 * 108.99140 * 198.32793 * 10 9 6 36 36 H 0.96997 * 119.99930 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7046 2.0288 1.2036 5 6 2.0314 3.5377 1.1414 6 6 3.5222 3.7213 1.2690 7 1 3.9295 2.8932 1.8491 8 6 3.7956 5.0275 2.0171 9 7 4.2116 3.7708 -0.0405 10 6 3.7122 2.7789 -1.0148 11 6 3.4481 1.4413 -0.3710 12 1 4.0647 1.3341 0.5214 13 6 3.7648 0.3361 -1.3453 14 1 3.2135 0.2575 -2.2707 15 6 4.7583 -0.5748 -1.0553 16 7 5.4300 -0.4789 0.0713 17 14 5.1514 -1.9444 -2.2633 18 1 6.1955 -1.4824 -3.2127 19 1 5.6472 -3.1315 -1.5215 20 1 3.9239 -2.3081 -3.0158 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 0.8899 25 1 1.8932 -0.5138 -0.8900 26 1 0.6412 1.9027 1.4072 27 1 2.2773 1.5734 2.0116 28 1 1.6938 3.9452 0.1884 29 1 1.5273 4.0542 1.9582 30 1 3.3431 4.9806 3.0075 31 1 4.8716 5.1712 2.1161 32 1 3.3670 5.8613 1.4610 33 1 5.2112 3.6938 0.0740 34 1 2.7868 3.1494 -1.4557 35 1 4.4541 2.6514 -1.8032 36 1 6.1292 -1.1195 0.2752 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218997021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:12 Heat of formation + Delta-G solvation = -14.729733 kcal Electronic energy + Delta-G solvation = -15408.045216 eV Core-core repulsion = 13119.093562 eV Total energy + Delta-G solvation = -2288.951655 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.48354 -36.79845 -35.17407 -33.20305 -31.79715 -29.61083 -28.00358 -25.96953 -24.40204 -23.01127 -21.13110 -20.39596 -18.56012 -17.19304 -16.92222 -16.23944 -15.93145 -15.81474 -15.24044 -14.50268 -14.19725 -13.82227 -13.58242 -13.03119 -13.02447 -12.89988 -12.73442 -12.61896 -12.53784 -12.23864 -12.10028 -11.78555 -11.66526 -11.39882 -11.12287 -10.93110 -10.73222 -9.27645 -8.67785 -8.21233 -6.28589 1.37446 1.38942 1.49170 2.36412 3.01770 3.37316 3.54060 4.00243 4.04900 4.28613 4.44218 4.57703 4.64327 4.74001 4.75270 4.79144 4.85288 4.89905 4.96789 5.07244 5.11282 5.18446 5.23433 5.36274 5.40610 5.50999 5.57658 5.63036 5.75198 5.97379 6.33925 6.48770 6.60393 6.94312 7.08517 7.37744 8.86288 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029043 B = 0.012116 C = 0.009493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.858392 B = 2310.451675 C = 2948.886801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.068 3.932 3 N -0.556 5.556 4 C 0.071 3.929 5 C -0.104 4.104 6 C 0.084 3.916 7 H -0.001 1.001 8 C -0.129 4.129 9 N -0.693 5.693 10 C 0.087 3.913 11 C 0.178 3.822 12 H 0.010 0.990 13 C -0.511 4.511 14 H 0.057 0.943 15 C 0.017 3.983 16 N -0.929 5.929 17 Si 0.955 3.045 18 H -0.273 1.273 19 H -0.287 1.287 20 H -0.263 1.263 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.055 0.945 24 H -0.013 1.013 25 H 0.074 0.926 26 H 0.080 0.920 27 H -0.022 1.022 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.332 0.668 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.116 5.496 2.167 8.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.060 4.060 3 N -0.281 5.281 4 C -0.059 4.059 5 C -0.142 4.142 6 C -0.025 4.025 7 H 0.017 0.983 8 C -0.187 4.187 9 N -0.323 5.323 10 C -0.043 4.043 11 C 0.071 3.929 12 H 0.028 0.972 13 C -0.550 4.550 14 H 0.075 0.925 15 C -0.182 4.182 16 N -0.568 5.568 17 Si 0.780 3.220 18 H -0.199 1.199 19 H -0.213 1.213 20 H -0.187 1.187 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.005 0.995 25 H 0.092 0.908 26 H 0.098 0.902 27 H -0.004 1.004 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.148 0.852 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.631 6.156 1.715 9.210 hybrid contribution 1.542 -2.299 0.587 2.830 sum -5.089 3.857 2.302 6.788 Atomic orbital electron populations 1.21781 0.93986 1.01567 1.01889 1.21834 0.95139 0.89517 0.99516 1.59459 1.20010 1.15724 1.32862 1.21129 0.99950 0.94999 0.89807 1.21567 0.94511 0.94822 1.03276 1.21250 0.94912 0.96878 0.89458 0.98275 1.21773 1.01557 0.96000 0.99342 1.60672 1.08332 1.52128 1.11124 1.21783 0.98969 0.89715 0.93836 1.19667 0.83813 0.94171 0.95239 0.97194 1.21185 1.17611 1.11947 1.04292 0.92513 1.25743 0.95941 0.99880 0.96665 1.70042 1.23852 1.37897 1.25047 0.85590 0.78862 0.78539 0.78967 1.19862 1.21311 1.18729 0.91733 0.92101 0.92630 0.99468 0.90817 0.90232 1.00412 0.91013 0.88564 0.91105 0.93099 0.91383 0.85177 0.92173 0.93251 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 9.84 71.98 0.71 -3.71 16 2 C 0.07 2.95 5.28 86.30 0.46 3.40 16 3 N -0.56 -24.67 3.95 -891.34 -3.52 -28.19 16 4 C 0.07 2.77 4.83 88.05 0.43 3.19 16 5 C -0.10 -3.49 5.18 30.38 0.16 -3.33 16 6 C 0.08 3.05 2.57 43.95 0.11 3.16 16 7 H 0.00 -0.04 6.52 -2.38 -0.02 -0.05 16 8 C -0.13 -3.54 9.22 71.98 0.66 -2.88 16 9 N -0.69 -27.31 6.51 -494.56 -3.22 -30.53 16 10 C 0.09 3.90 5.66 85.42 0.48 4.38 16 11 C 0.18 8.94 2.17 43.30 0.09 9.03 16 12 H 0.01 0.59 5.57 -2.39 -0.01 0.58 16 13 C -0.51 -27.55 5.60 25.60 0.14 -27.40 16 14 H 0.06 3.06 7.64 -2.91 -0.02 3.03 16 15 C 0.02 0.93 5.46 84.65 0.46 1.39 16 16 N -0.93 -54.27 12.62 21.45 0.27 -54.00 16 17 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 20 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 21 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.05 1.66 6.39 -2.39 -0.02 1.64 16 24 H -0.01 -0.63 8.10 -2.39 -0.02 -0.65 16 25 H 0.07 3.55 5.79 -2.39 -0.01 3.54 16 26 H 0.08 2.70 5.98 -2.38 -0.01 2.68 16 27 H -0.02 -0.98 7.60 -2.39 -0.02 -1.00 16 28 H 0.07 2.52 7.19 -2.39 -0.02 2.51 16 29 H 0.10 2.57 7.69 -2.38 -0.02 2.55 16 30 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 31 H 0.05 1.36 8.14 -2.38 -0.02 1.35 16 32 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.33 13.17 8.91 -89.69 -0.80 12.37 16 34 H 0.06 2.67 7.20 -2.39 -0.02 2.66 16 35 H 0.05 2.32 7.71 -2.39 -0.02 2.31 16 36 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -59.59 270.99 -0.48 -60.08 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.25 Total: 20.15 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 3.71 Total: -12.76 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -6.47 Total: -112.72 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -59.59 -0.48 -60.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218997021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.348 kcal (2) G-P(sol) polarization free energy of solvation -59.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds