Wall clock time and date at job start Mon Mar 30 2020 03:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47391 * 2 1 4 4 C 1.44177 * 110.99773 * 71.10013 * 3 2 1 5 5 C 1.54317 * 112.60955 * 217.51770 * 4 3 2 6 6 C 1.54307 * 111.73182 * 318.92620 * 5 4 3 7 7 H 1.08997 * 108.85964 * 79.71834 * 6 5 4 8 8 C 1.53001 * 108.85487 * 198.10289 * 6 5 4 9 9 N 1.44188 * 112.61636 * 318.90739 * 6 5 4 10 10 C 1.48085 * 109.90158 * 94.34095 * 9 6 5 11 11 C 1.46092 * 112.15468 * 279.67278 * 10 9 6 12 12 H 1.09006 * 108.93954 * 300.08309 * 11 10 9 13 13 C 1.50697 * 108.94607 * 181.38181 * 11 10 9 14 14 H 1.07996 * 119.99617 * 295.32533 * 13 11 10 15 15 C 1.37875 * 120.00161 * 115.33101 * 13 11 10 16 16 N 1.31513 * 119.99910 * 173.56765 * 15 13 11 17 17 Si 1.86802 * 120.00276 * 353.56347 * 15 13 11 18 18 H 1.48504 * 109.46724 * 85.75008 * 17 15 13 19 19 H 1.48496 * 109.47457 * 205.75274 * 17 15 13 20 20 H 1.48505 * 109.46975 * 325.75862 * 17 15 13 21 21 H 1.09005 * 109.46860 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.46878 * 299.99717 * 1 2 3 23 23 H 1.08997 * 109.47004 * 60.00405 * 1 2 3 24 24 H 1.09001 * 109.47208 * 239.99806 * 2 1 3 25 25 H 1.09004 * 109.47381 * 120.00158 * 2 1 3 26 26 H 1.08995 * 108.86080 * 338.32958 * 4 3 2 27 27 H 1.09010 * 108.85283 * 96.82354 * 4 3 2 28 28 H 1.09002 * 109.02612 * 79.50105 * 5 4 3 29 29 H 1.08998 * 109.03044 * 198.41762 * 5 4 3 30 30 H 1.09002 * 109.47588 * 183.08933 * 8 6 5 31 31 H 1.08999 * 109.47003 * 303.09167 * 8 6 5 32 32 H 1.09005 * 109.47144 * 63.08956 * 8 6 5 33 33 H 1.00896 * 111.00285 * 331.16177 * 9 6 5 34 34 H 1.09000 * 108.94789 * 40.35962 * 10 9 6 35 35 H 1.09002 * 108.94574 * 159.07065 * 10 9 6 36 36 H 0.97000 * 119.99849 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7809 2.0174 1.2735 5 6 1.3841 3.5021 1.1334 6 6 2.2229 4.2183 0.0543 7 1 1.8163 3.9749 -0.9272 8 6 2.1180 5.7296 0.2688 9 7 3.6133 3.8381 0.0899 10 6 3.8591 2.7353 -0.8673 11 6 3.4632 1.4375 -0.3260 12 1 4.0366 1.2422 0.5802 13 6 3.7747 0.3683 -1.3413 14 1 3.2593 0.3583 -2.2903 15 6 4.7174 -0.5972 -1.0585 16 7 4.8994 -1.6014 -1.8880 17 14 5.7364 -0.4790 0.5026 18 1 4.9925 -1.1010 1.6274 19 1 7.0251 -1.1906 0.3078 20 1 6.0012 0.9487 0.8139 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 0.9796 1.4855 1.7863 27 1 2.6878 1.9520 1.8748 28 1 0.3299 3.5642 0.8633 29 1 1.5357 4.0022 2.0899 30 1 2.6624 6.2474 -0.5210 31 1 1.0700 6.0282 0.2437 32 1 2.5469 5.9899 1.2365 33 1 3.8927 3.5758 1.0233 34 1 3.2934 2.9258 -1.7794 35 1 4.9215 2.7071 -1.1096 36 1 5.5629 -2.2805 -1.6893 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218997097.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:15 Heat of formation + Delta-G solvation = -15.151229 kcal Electronic energy + Delta-G solvation = -15459.325396 eV Core-core repulsion = 13170.355464 eV Total energy + Delta-G solvation = -2288.969932 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.61589 -36.90112 -35.18726 -33.59822 -31.69207 -29.92684 -28.11503 -25.95422 -24.16412 -22.80060 -21.73711 -20.31062 -19.26245 -17.25008 -16.66813 -16.18476 -15.83992 -15.47965 -15.24576 -14.89743 -14.44968 -14.24701 -13.47659 -13.36247 -12.97557 -12.86956 -12.79744 -12.66615 -12.59585 -12.35965 -11.93884 -11.77988 -11.61292 -11.39415 -11.26712 -11.14147 -10.78260 -9.31842 -8.96295 -8.35564 -6.35901 1.23510 1.28650 1.36881 2.25186 2.87885 3.33715 3.52012 3.96218 4.10139 4.25342 4.32633 4.35970 4.54662 4.62145 4.70156 4.75987 4.83156 4.90309 4.93861 5.02575 5.08439 5.11315 5.19211 5.25141 5.31436 5.43382 5.50840 5.53072 5.61404 6.07172 6.31697 6.36897 6.57507 6.70067 6.79229 7.26768 8.80533 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029546 B = 0.012805 C = 0.010464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.445183 B = 2186.105934 C = 2675.208329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.060 3.940 3 N -0.532 5.532 4 C 0.043 3.957 5 C -0.125 4.125 6 C 0.085 3.915 7 H 0.054 0.946 8 C -0.129 4.129 9 N -0.675 5.675 10 C 0.085 3.915 11 C 0.153 3.847 12 H 0.001 0.999 13 C -0.500 4.500 14 H 0.038 0.962 15 C 0.024 3.976 16 N -0.936 5.936 17 Si 0.932 3.068 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.252 1.252 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.003 0.997 26 H 0.071 0.929 27 H 0.015 0.985 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.332 0.668 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.613 9.351 8.342 14.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.068 4.068 3 N -0.257 5.257 4 C -0.086 4.086 5 C -0.165 4.165 6 C -0.026 4.026 7 H 0.072 0.928 8 C -0.187 4.187 9 N -0.303 5.303 10 C -0.044 4.044 11 C 0.045 3.955 12 H 0.019 0.981 13 C -0.539 4.539 14 H 0.057 0.943 15 C -0.175 4.175 16 N -0.576 5.576 17 Si 0.757 3.243 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.176 1.176 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.021 0.979 26 H 0.089 0.911 27 H 0.033 0.967 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.149 0.851 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.562 9.988 7.493 14.105 hybrid contribution 0.811 -1.888 1.296 2.429 sum -5.750 8.100 8.790 13.264 Atomic orbital electron populations 1.21716 0.93808 1.01460 1.01889 1.21948 0.95551 0.89347 0.99955 1.61784 1.17545 1.16732 1.29601 1.22072 0.99468 0.96606 0.90498 1.22616 1.00869 0.93244 0.99739 1.21292 0.87221 0.95539 0.98555 0.92798 1.21770 1.01412 0.93753 1.01727 1.61040 1.19602 1.38577 1.11100 1.20908 0.99749 0.88427 0.95356 1.19339 0.85754 0.95808 0.94577 0.98117 1.20909 1.21315 1.09988 1.01736 0.94324 1.25769 0.98022 0.94331 0.99377 1.70022 1.35502 1.12685 1.39358 0.85961 0.78764 0.79239 0.80323 1.20153 1.21052 1.17583 0.91928 0.92086 0.92693 0.91414 0.97896 0.91060 0.96713 0.90872 0.90323 0.93157 0.91462 0.92402 0.85140 0.92617 0.92543 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 9.94 71.98 0.72 -3.49 16 2 C 0.06 2.49 5.13 86.30 0.44 2.93 16 3 N -0.53 -21.54 4.18 -889.24 -3.71 -25.25 16 4 C 0.04 1.41 4.86 87.26 0.42 1.84 16 5 C -0.12 -3.36 5.58 31.48 0.18 -3.18 16 6 C 0.09 2.54 2.65 45.87 0.12 2.67 16 7 H 0.05 1.86 7.17 -2.39 -0.02 1.85 16 8 C -0.13 -3.04 9.35 71.98 0.67 -2.37 16 9 N -0.68 -23.20 6.42 -503.61 -3.24 -26.43 16 10 C 0.09 3.57 5.28 83.95 0.44 4.01 16 11 C 0.15 6.97 1.61 41.82 0.07 7.04 16 12 H 0.00 0.06 3.97 -2.38 -0.01 0.05 16 13 C -0.50 -27.45 6.25 25.60 0.16 -27.29 16 14 H 0.04 2.40 8.01 -2.91 -0.02 2.38 16 15 C 0.02 1.37 5.47 84.65 0.46 1.83 16 16 N -0.94 -56.66 13.96 21.45 0.30 -56.36 16 17 Si 0.93 43.81 26.95 68.60 1.85 45.66 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.25 -11.17 6.79 99.48 0.68 -10.49 16 21 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 22 H 0.06 1.70 6.64 -2.39 -0.02 1.68 16 23 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.07 3.40 5.94 -2.39 -0.01 3.39 16 25 H 0.00 0.12 8.06 -2.39 -0.02 0.10 16 26 H 0.07 2.15 6.09 -2.39 -0.01 2.13 16 27 H 0.01 0.51 6.66 -2.38 -0.02 0.49 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.08 1.77 7.98 -2.39 -0.02 1.75 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.33 11.04 7.56 -89.70 -0.68 10.36 16 34 H 0.06 2.46 7.37 -2.39 -0.02 2.44 16 35 H 0.06 2.49 8.12 -2.39 -0.02 2.47 16 36 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -59.99 269.36 -0.78 -60.76 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 0.34 Total: 17.63 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 3.69 Total: -16.01 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -6.65 Total: -108.04 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.85 Total: 45.66 kcal Total: -59.99 -0.78 -60.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218997097.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.612 kcal (2) G-P(sol) polarization free energy of solvation -59.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds