Wall clock time and date at job start Mon Mar 30 2020 03:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47405 * 2 1 4 4 C 1.50706 * 109.46875 * 119.99521 * 2 1 3 5 5 H 1.08008 * 119.99440 * 119.99997 * 4 2 1 6 6 C 1.37872 * 120.00580 * 299.99808 * 4 2 1 7 7 N 1.31516 * 119.99645 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00325 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46918 * 90.00325 * 8 6 4 10 10 H 1.48494 * 109.47183 * 210.00481 * 8 6 4 11 11 H 1.48501 * 109.46728 * 330.00037 * 8 6 4 12 12 N 1.46899 * 109.47503 * 239.99443 * 2 1 3 13 13 C 1.46905 * 110.99783 * 84.99894 * 12 2 1 14 14 C 1.52998 * 109.47221 * 174.77276 * 13 12 2 15 15 H 1.08991 * 110.46289 * 57.04387 * 14 13 12 16 16 C 1.54382 * 110.40635 * 294.62818 * 14 13 12 17 17 C 1.54259 * 105.15173 * 217.42064 * 16 14 13 18 18 C 1.54382 * 105.05753 * 359.95285 * 17 16 14 19 19 N 1.48558 * 104.59499 * 23.85168 * 18 17 16 20 20 C 1.46908 * 110.99904 * 200.95826 * 19 18 17 21 21 H 1.09000 * 109.47293 * 60.00308 * 1 2 3 22 22 H 1.09002 * 109.47029 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47262 * 300.00116 * 1 2 3 24 24 H 0.96996 * 120.00400 * 179.97438 * 7 6 4 25 25 H 1.00908 * 110.99944 * 321.05355 * 12 2 1 26 26 H 1.09003 * 109.46945 * 54.76751 * 13 12 2 27 27 H 1.09004 * 109.47296 * 294.77127 * 13 12 2 28 28 H 1.09004 * 110.31752 * 98.47586 * 16 14 13 29 29 H 1.08994 * 110.32555 * 336.37044 * 16 14 13 30 30 H 1.08991 * 110.32578 * 118.84767 * 17 16 14 31 31 H 1.09000 * 110.32600 * 240.95782 * 17 16 14 32 32 H 1.08996 * 110.41353 * 142.63491 * 18 17 16 33 33 H 1.09002 * 110.41494 * 264.95223 * 18 17 16 34 34 H 1.08998 * 109.46619 * 60.15001 * 20 19 18 35 35 H 1.08999 * 109.46794 * 180.15003 * 20 19 18 36 36 H 1.08998 * 109.47205 * 300.14584 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3225 -1.1194 4.0081 9 1 3.6305 -0.5438 4.4119 10 1 1.3445 -0.9488 5.1123 11 1 2.4880 -2.5652 3.7123 12 7 2.0198 -0.6926 -1.1993 13 6 2.0825 0.2225 -2.3469 14 6 2.7172 -0.4970 -3.5387 15 1 2.1567 -1.3997 -3.7814 16 6 4.1909 -0.8431 -3.2360 17 6 4.9368 -0.6318 -4.5697 18 6 3.8513 -0.1764 -5.5685 19 7 2.7812 0.4061 -4.7186 20 6 1.4975 0.4320 -5.4324 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 0.7082 1.1611 3.4843 25 1 1.4496 -1.4980 -1.4100 26 1 2.6845 1.0927 -2.0851 27 1 1.0750 0.5438 -2.6110 28 1 4.2776 -1.8809 -2.9142 29 1 4.5871 -0.1757 -2.4708 30 1 5.6979 0.1406 -4.4595 31 1 5.3911 -1.5654 -4.9015 32 1 4.2509 0.5776 -6.2466 33 1 3.4707 -1.0288 -6.1312 34 1 1.2117 -0.5845 -5.7028 35 1 0.7323 0.8655 -4.7884 36 1 1.5960 1.0342 -6.3356 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219415176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:03 Heat of formation + Delta-G solvation = -1.187747 kcal Electronic energy + Delta-G solvation = -14534.985162 eV Core-core repulsion = 12246.620732 eV Total energy + Delta-G solvation = -2288.364430 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.92880 -35.75553 -32.60889 -31.96894 -30.06520 -27.20185 -25.51281 -25.10200 -23.29721 -20.82253 -20.09415 -19.79575 -16.31947 -15.81661 -15.17905 -14.75173 -14.43705 -14.02383 -13.61209 -13.30679 -13.01806 -12.40102 -12.12283 -11.70944 -11.49292 -11.25740 -11.10161 -11.01089 -10.91109 -10.85227 -10.52560 -10.30404 -10.19463 -10.06267 -9.78073 -8.95553 -8.39181 -8.31762 -7.16202 -5.94211 -3.97325 3.35635 3.41514 3.45587 4.06892 4.48710 4.80504 4.93686 5.15332 5.36765 5.37680 5.42871 5.48528 5.56589 5.69386 5.72288 5.90235 5.92623 6.03748 6.14804 6.33888 6.37319 6.50344 6.64007 6.74686 6.88279 7.04268 7.14337 7.18705 7.43779 7.77920 7.93182 8.32745 8.59268 8.67550 9.09989 9.67868 11.12936 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048654 B = 0.006678 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.349346 B = 4191.661397 C = 4607.921332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.212 3.788 3 H 0.034 0.966 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.682 5.682 13 C 0.078 3.922 14 C 0.068 3.932 15 H 0.045 0.955 16 C -0.104 4.104 17 C -0.128 4.128 18 C 0.033 3.967 19 N -0.514 5.514 20 C 0.015 3.985 21 H 0.004 0.996 22 H 0.026 0.974 23 H 0.088 0.912 24 H 0.259 0.741 25 H 0.322 0.678 26 H 0.072 0.928 27 H 0.014 0.986 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.104 -2.231 -13.820 14.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.105 3.895 3 H 0.052 0.948 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.311 5.311 13 C -0.053 4.053 14 C -0.040 4.040 15 H 0.063 0.937 16 C -0.143 4.143 17 C -0.166 4.166 18 C -0.095 4.095 19 N -0.238 5.238 20 C -0.134 4.134 21 H 0.023 0.977 22 H 0.046 0.954 23 H 0.107 0.893 24 H 0.069 0.931 25 H 0.138 0.862 26 H 0.090 0.910 27 H 0.032 0.968 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.088 0.912 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.801 -1.469 -13.361 13.969 hybrid contribution -1.052 -1.106 0.337 1.563 sum 2.749 -2.574 -13.024 13.558 Atomic orbital electron populations 1.22429 1.00839 0.99076 1.00436 1.19162 0.89495 0.94438 0.86427 0.94849 1.21173 1.30037 1.12369 0.89623 0.91965 1.24957 0.95389 0.95247 0.99035 1.69887 1.37376 1.23299 1.23273 0.86510 0.78438 0.79994 0.82498 1.20776 1.21471 1.19977 1.60717 1.57900 1.09045 1.03485 1.21742 0.97476 0.96098 0.89968 1.22706 0.97115 0.93300 0.90898 0.93720 1.22163 0.93387 1.02210 0.96493 1.22352 0.97750 1.00784 0.95739 1.23071 0.93040 0.97618 0.95738 1.65260 1.05030 1.47355 1.06196 1.22492 0.92218 0.99792 0.98884 0.97709 0.95439 0.89300 0.93120 0.86241 0.90988 0.96765 0.91303 0.90279 0.91296 0.91849 0.90587 0.94342 0.95737 0.91155 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.94 37.16 0.33 -3.80 16 2 C 0.21 5.43 2.57 -68.86 -0.18 5.25 16 3 H 0.03 0.94 7.72 -51.93 -0.40 0.54 16 4 C -0.49 -13.81 8.84 -34.44 -0.30 -14.11 16 5 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.07 11.32 55.43 0.63 -25.44 16 8 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.68 -14.62 5.98 -107.95 -0.65 -15.27 16 13 C 0.08 1.46 5.07 -3.82 -0.02 1.44 16 14 C 0.07 1.07 2.54 -65.98 -0.17 0.90 16 15 H 0.04 0.70 7.90 -51.93 -0.41 0.29 16 16 C -0.10 -1.56 6.33 -25.35 -0.16 -1.72 16 17 C -0.13 -1.55 7.00 -25.35 -0.18 -1.73 16 18 C 0.03 0.40 6.49 -2.18 -0.01 0.39 16 19 N -0.51 -7.34 5.34 -230.22 -1.23 -8.57 16 20 C 0.02 0.19 9.42 60.07 0.57 0.75 16 21 H 0.00 0.09 7.56 -51.93 -0.39 -0.30 16 22 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 23 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 24 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.32 6.58 8.53 -39.29 -0.34 6.25 16 26 H 0.07 1.47 7.86 -51.93 -0.41 1.06 16 27 H 0.01 0.27 6.93 -51.93 -0.36 -0.09 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.08 1.33 7.81 -51.93 -0.41 0.92 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.43 7.98 -51.93 -0.41 0.02 16 34 H 0.02 0.28 7.98 -51.93 -0.41 -0.13 16 35 H 0.07 0.91 7.51 -51.93 -0.39 0.52 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 284.81 15.07 4.29 4.29 Total: -1.00 -28.60 284.81 -8.52 -37.12 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.33 Total: 2.38 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -0.22 Total: -11.21 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -1.25 Total: -49.28 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.60 -8.52 -37.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219415176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.930 kcal (2) G-P(sol) polarization free energy of solvation -28.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds