Wall clock time and date at job start Mon Mar 30 2020 03:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47405 * 2 1 4 4 C 1.50706 * 109.46875 * 119.99521 * 2 1 3 5 5 H 1.08008 * 119.99440 * 119.99997 * 4 2 1 6 6 C 1.37872 * 120.00580 * 299.99808 * 4 2 1 7 7 N 1.31516 * 119.99645 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00325 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46918 * 90.00325 * 8 6 4 10 10 H 1.48494 * 109.47183 * 210.00481 * 8 6 4 11 11 H 1.48501 * 109.46728 * 330.00037 * 8 6 4 12 12 N 1.46899 * 109.47503 * 239.99443 * 2 1 3 13 13 C 1.46905 * 110.99783 * 84.99894 * 12 2 1 14 14 C 1.52998 * 109.47221 * 174.77276 * 13 12 2 15 15 H 1.08991 * 110.46289 * 57.04387 * 14 13 12 16 16 C 1.54382 * 110.40635 * 294.62818 * 14 13 12 17 17 C 1.54259 * 105.15173 * 217.42064 * 16 14 13 18 18 C 1.54382 * 105.05753 * 359.95285 * 17 16 14 19 19 N 1.48558 * 104.59499 * 23.85168 * 18 17 16 20 20 C 1.46908 * 110.99904 * 200.95826 * 19 18 17 21 21 H 1.09000 * 109.47293 * 60.00308 * 1 2 3 22 22 H 1.09002 * 109.47029 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47262 * 300.00116 * 1 2 3 24 24 H 0.96996 * 120.00400 * 179.97438 * 7 6 4 25 25 H 1.00908 * 110.99944 * 321.05355 * 12 2 1 26 26 H 1.09003 * 109.46945 * 54.76751 * 13 12 2 27 27 H 1.09004 * 109.47296 * 294.77127 * 13 12 2 28 28 H 1.09004 * 110.31752 * 98.47586 * 16 14 13 29 29 H 1.08994 * 110.32555 * 336.37044 * 16 14 13 30 30 H 1.08991 * 110.32578 * 118.84767 * 17 16 14 31 31 H 1.09000 * 110.32600 * 240.95782 * 17 16 14 32 32 H 1.08996 * 110.41353 * 142.63491 * 18 17 16 33 33 H 1.09002 * 110.41494 * 264.95223 * 18 17 16 34 34 H 1.08998 * 109.46619 * 60.15001 * 20 19 18 35 35 H 1.08999 * 109.46794 * 180.15003 * 20 19 18 36 36 H 1.08998 * 109.47205 * 300.14584 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3225 -1.1194 4.0081 9 1 3.6305 -0.5438 4.4119 10 1 1.3445 -0.9488 5.1123 11 1 2.4880 -2.5652 3.7123 12 7 2.0198 -0.6926 -1.1993 13 6 2.0825 0.2225 -2.3469 14 6 2.7172 -0.4970 -3.5387 15 1 2.1567 -1.3997 -3.7814 16 6 4.1909 -0.8431 -3.2360 17 6 4.9368 -0.6318 -4.5697 18 6 3.8513 -0.1764 -5.5685 19 7 2.7812 0.4061 -4.7186 20 6 1.4975 0.4320 -5.4324 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 0.7082 1.1611 3.4843 25 1 1.4496 -1.4980 -1.4100 26 1 2.6845 1.0927 -2.0851 27 1 1.0750 0.5438 -2.6110 28 1 4.2776 -1.8809 -2.9142 29 1 4.5871 -0.1757 -2.4708 30 1 5.6979 0.1406 -4.4595 31 1 5.3911 -1.5654 -4.9015 32 1 4.2509 0.5776 -6.2466 33 1 3.4707 -1.0288 -6.1312 34 1 1.2117 -0.5845 -5.7028 35 1 0.7323 0.8655 -4.7884 36 1 1.5960 1.0342 -6.3356 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219415176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:03 Heat of formation + Delta-G solvation = -21.192517 kcal Electronic energy + Delta-G solvation = -14535.852634 eV Core-core repulsion = 12246.620732 eV Total energy + Delta-G solvation = -2289.231902 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.09307 -37.57695 -34.57157 -33.02617 -31.72889 -28.78961 -27.24523 -26.54631 -24.78316 -22.22707 -21.69609 -21.09726 -18.36254 -16.95948 -16.78738 -16.32063 -15.99344 -15.42337 -14.92304 -14.67448 -14.63016 -14.04141 -13.53992 -13.24227 -12.91593 -12.87950 -12.77976 -12.67215 -12.26543 -12.22343 -12.15273 -12.03233 -11.73867 -11.66428 -11.32917 -11.00128 -10.48133 -9.46213 -8.95179 -8.08736 -6.20181 1.44248 1.44750 1.55735 2.44716 2.95032 3.19650 3.67865 3.85893 3.96240 4.09389 4.24910 4.38937 4.54946 4.56474 4.60803 4.68309 4.77513 4.82246 4.87672 4.96781 5.03416 5.07790 5.09875 5.14504 5.30537 5.38150 5.44271 5.69276 5.81018 5.95203 6.11719 6.27314 6.64323 6.82759 6.95165 7.49872 8.97189 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048654 B = 0.006678 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.349346 B = 4191.661397 C = 4607.921332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.217 3.783 3 H -0.002 1.002 4 C -0.514 4.514 5 H 0.057 0.943 6 C 0.006 3.994 7 N -0.925 5.925 8 Si 0.963 3.037 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.267 1.267 12 N -0.680 5.680 13 C 0.085 3.915 14 C 0.076 3.924 15 H 0.051 0.949 16 C -0.106 4.106 17 C -0.122 4.122 18 C 0.035 3.965 19 N -0.532 5.532 20 C 0.015 3.985 21 H 0.021 0.979 22 H 0.034 0.966 23 H 0.062 0.938 24 H 0.261 0.739 25 H 0.330 0.670 26 H 0.048 0.952 27 H 0.012 0.988 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.033 0.967 35 H 0.058 0.942 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.607 -3.309 -14.984 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 H 0.016 0.984 4 C -0.552 4.552 5 H 0.075 0.925 6 C -0.192 4.192 7 N -0.565 5.565 8 Si 0.789 3.211 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.310 5.310 13 C -0.045 4.045 14 C -0.033 4.033 15 H 0.069 0.931 16 C -0.145 4.145 17 C -0.160 4.160 18 C -0.092 4.092 19 N -0.257 5.257 20 C -0.134 4.134 21 H 0.040 0.960 22 H 0.053 0.947 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.147 0.853 26 H 0.067 0.933 27 H 0.030 0.970 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.307 -2.552 -14.552 15.389 hybrid contribution -1.212 -0.725 0.650 1.555 sum 3.095 -3.277 -13.902 14.615 Atomic orbital electron populations 1.22235 1.00050 0.99281 0.99916 1.18926 0.89995 0.92580 0.87667 0.98445 1.21458 1.30345 1.12474 0.90944 0.92507 1.25757 0.95471 0.95912 1.02018 1.70019 1.38102 1.24410 1.23992 0.85480 0.77879 0.79078 0.78703 1.20382 1.20920 1.19191 1.60570 1.57650 1.09423 1.03327 1.21663 0.97234 0.95290 0.90313 1.22513 0.97216 0.93217 0.90355 0.93137 1.22125 0.93337 1.01433 0.97576 1.22339 0.97658 1.02033 0.93939 1.23150 0.92048 0.98539 0.95497 1.65214 1.06574 1.47407 1.06507 1.22524 0.91059 1.00640 0.99132 0.95984 0.94714 0.91962 0.93020 0.85307 0.93303 0.97000 0.91311 0.92939 0.91025 0.89731 0.89034 0.92947 0.94824 0.92362 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.68 8.94 71.98 0.64 -7.04 16 2 C 0.22 11.33 2.57 44.17 0.11 11.44 16 3 H 0.00 -0.14 7.72 -2.39 -0.02 -0.16 16 4 C -0.51 -29.06 8.84 25.60 0.23 -28.84 16 5 H 0.06 3.21 7.81 -2.91 -0.02 3.18 16 6 C 0.01 0.35 5.30 84.65 0.45 0.80 16 7 N -0.92 -54.39 11.32 21.45 0.24 -54.15 16 8 Si 0.96 44.53 29.54 68.60 2.03 46.55 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 N -0.68 -29.39 5.98 -495.43 -2.96 -32.35 16 13 C 0.09 3.23 5.07 86.30 0.44 3.67 16 14 C 0.08 2.30 2.54 45.03 0.11 2.41 16 15 H 0.05 1.49 7.90 -2.39 -0.02 1.47 16 16 C -0.11 -3.09 6.33 31.49 0.20 -2.89 16 17 C -0.12 -2.66 7.00 31.49 0.22 -2.44 16 18 C 0.04 0.74 6.49 86.45 0.56 1.30 16 19 N -0.53 -14.25 5.34 -882.27 -4.71 -18.96 16 20 C 0.02 0.34 9.42 127.69 1.20 1.54 16 21 H 0.02 0.96 7.56 -2.39 -0.02 0.95 16 22 H 0.03 1.61 8.13 -2.39 -0.02 1.60 16 23 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 24 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 25 H 0.33 13.35 8.53 -89.69 -0.76 12.58 16 26 H 0.05 2.06 7.86 -2.39 -0.02 2.04 16 27 H 0.01 0.45 6.93 -2.39 -0.02 0.44 16 28 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 29 H 0.05 1.78 7.81 -2.39 -0.02 1.76 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.05 0.97 7.98 -2.39 -0.02 0.96 16 34 H 0.03 0.70 7.98 -2.39 -0.02 0.68 16 35 H 0.06 1.44 7.51 -2.39 -0.02 1.42 16 36 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -61.00 284.81 -0.97 -61.97 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.27 Total: 16.98 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 4.17 Total: -20.05 kcal Atomic # 7 Polarization: -98.03 SS G_CDS: -7.43 Total: -105.46 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -61.00 -0.97 -61.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219415176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.780 kcal (2) G-P(sol) polarization free energy of solvation -61.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds