Wall clock time and date at job start Mon Mar 30 2020 03:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08996 * 109.46516 * 2 1 4 4 C 1.50694 * 109.46883 * 120.00107 * 2 1 3 5 5 H 1.07996 * 120.00238 * 114.24007 * 4 2 1 6 6 C 1.37880 * 119.99810 * 294.23476 * 4 2 1 7 7 N 1.31519 * 119.99660 * 158.58243 * 6 4 2 8 8 Si 1.86799 * 120.00227 * 338.30668 * 6 4 2 9 9 H 1.48500 * 109.47007 * 270.27145 * 8 6 4 10 10 H 1.48499 * 109.47050 * 30.27616 * 8 6 4 11 11 H 1.48503 * 109.46959 * 150.27304 * 8 6 4 12 12 N 1.46899 * 109.46862 * 239.99952 * 2 1 3 13 13 C 1.47841 * 110.99571 * 180.84206 * 12 2 1 14 14 C 1.54917 * 104.79684 * 213.63667 * 13 12 2 15 15 C 1.55139 * 101.64991 * 37.07004 * 14 13 12 16 16 H 1.08999 * 110.70534 * 82.72851 * 15 14 13 17 17 N 1.46899 * 110.85645 * 205.89475 * 15 14 13 18 18 C 1.46897 * 111.00216 * 177.93284 * 17 15 14 19 19 C 1.46901 * 110.99755 * 301.88467 * 17 15 14 20 20 C 1.47440 * 111.00054 * 60.00158 * 12 2 1 21 21 H 1.09003 * 109.46845 * 293.06913 * 1 2 3 22 22 H 1.09000 * 109.47141 * 53.07036 * 1 2 3 23 23 H 1.08998 * 109.46493 * 173.06792 * 1 2 3 24 24 H 0.97006 * 119.99746 * 354.65576 * 7 6 4 25 25 H 1.08994 * 110.37784 * 332.46292 * 13 12 2 26 26 H 1.08998 * 110.37671 * 94.80934 * 13 12 2 27 27 H 1.08996 * 110.99046 * 278.98149 * 14 13 12 28 28 H 1.08991 * 111.02272 * 155.17568 * 14 13 12 29 29 H 1.08995 * 109.47488 * 59.99835 * 18 17 15 30 30 H 1.09000 * 109.46992 * 180.02562 * 18 17 15 31 31 H 1.08997 * 109.46968 * 299.99634 * 18 17 15 32 32 H 1.08998 * 109.47145 * 65.45870 * 19 17 15 33 33 H 1.09000 * 109.46638 * 185.44971 * 19 17 15 34 34 H 1.08992 * 109.47275 * 305.45372 * 19 17 15 35 35 H 1.09006 * 109.88895 * 242.65946 * 20 12 2 36 36 H 1.09002 * 109.89096 * 3.68775 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5744 -1.6395 1.1341 6 6 1.8000 -0.1741 2.4792 7 7 1.8429 -0.9447 3.5441 8 14 1.4320 1.6484 2.6593 9 1 2.7029 2.3943 2.8424 10 1 0.7425 2.1372 1.4383 11 1 0.5578 1.8624 3.8406 12 7 2.0197 -0.6925 -1.1994 13 6 3.4975 -0.7298 -1.2235 14 6 3.8712 -0.6369 -2.7240 15 6 2.7948 0.3461 -3.2547 16 1 3.0898 1.3786 -3.0672 17 7 2.5496 0.1299 -4.6869 18 6 1.4959 1.0258 -5.1818 19 6 3.7862 0.2924 -5.4630 20 6 1.5470 -0.0239 -2.4256 21 1 -0.3633 0.4027 0.9455 22 1 -0.3633 0.6175 -0.8215 23 1 -0.3632 -1.0202 -0.1240 24 1 1.9607 -1.9025 3.4453 25 1 3.9075 0.1195 -0.6771 26 1 3.8604 -1.6660 -0.7993 27 1 3.7849 -1.6093 -3.2088 28 1 4.8726 -0.2262 -2.8528 29 1 1.7997 2.0618 -5.0318 30 1 1.3343 0.8444 -6.2444 31 1 0.5716 0.8356 -4.6364 32 1 4.4922 -0.4920 -5.1902 33 1 3.5592 0.2229 -6.5268 34 1 4.2248 1.2668 -5.2479 35 1 0.9106 -0.7011 -2.9954 36 1 0.9908 0.8769 -2.1659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220114524.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:01 Heat of formation + Delta-G solvation = 12.771361 kcal Electronic energy + Delta-G solvation = -14962.638605 eV Core-core repulsion = 12674.879487 eV Total energy + Delta-G solvation = -2287.759118 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.05480 -36.27646 -33.28188 -31.27822 -28.72046 -27.92836 -26.99934 -24.71971 -23.14769 -21.17705 -19.95611 -18.97611 -17.48250 -16.01597 -15.69464 -14.58469 -14.40933 -13.82870 -13.58558 -13.23699 -12.71765 -12.54481 -12.41816 -12.16394 -11.82348 -11.73959 -11.44354 -10.93437 -10.83099 -10.56705 -10.40647 -10.33500 -10.28061 -10.16075 -9.71812 -8.85262 -8.33272 -8.21663 -7.25695 -6.42859 -3.99801 3.40804 3.43067 3.58778 3.97791 4.51965 4.82904 4.89425 5.14589 5.24096 5.33389 5.35954 5.40896 5.50237 5.60027 5.78219 5.84911 5.89992 5.97960 6.13637 6.17067 6.36250 6.45483 6.58136 6.63312 6.65804 6.79055 6.95616 7.07022 7.19461 7.35264 7.78829 8.08643 8.37363 8.48128 9.03818 9.65662 10.95596 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047790 B = 0.008256 C = 0.007809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.758711 B = 3390.762753 C = 3584.756853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.184 3.816 3 H -0.010 1.010 4 C -0.593 4.593 5 H 0.063 0.937 6 C 0.035 3.965 7 N -0.903 5.903 8 Si 1.037 2.963 9 H -0.287 1.287 10 H -0.278 1.278 11 H -0.285 1.285 12 N -0.515 5.515 13 C 0.065 3.935 14 C -0.123 4.123 15 C 0.060 3.940 16 H 0.042 0.958 17 N -0.536 5.536 18 C 0.023 3.977 19 C 0.025 3.975 20 C 0.051 3.949 21 H 0.048 0.952 22 H 0.019 0.981 23 H 0.052 0.948 24 H 0.270 0.730 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.021 0.979 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.021 0.979 35 H 0.075 0.925 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.737 4.571 -15.235 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.076 3.924 3 H 0.008 0.992 4 C -0.631 4.631 5 H 0.082 0.918 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.865 3.135 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.211 1.211 12 N -0.239 5.239 13 C -0.063 4.063 14 C -0.162 4.162 15 C -0.050 4.050 16 H 0.060 0.940 17 N -0.260 5.260 18 C -0.125 4.125 19 C -0.123 4.123 20 C -0.078 4.078 21 H 0.066 0.934 22 H 0.038 0.962 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.062 0.938 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.080 0.920 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.040 0.960 35 H 0.093 0.907 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.089 4.770 -14.128 14.951 hybrid contribution 0.854 0.544 -1.024 1.440 sum 1.943 5.314 -15.152 16.174 Atomic orbital electron populations 1.22115 0.98292 1.00248 0.98649 1.19825 0.91832 0.91841 0.88854 0.99224 1.21918 1.40196 1.10597 0.90362 0.91848 1.25621 0.93861 1.05487 0.92136 1.70798 1.44625 1.06672 1.31529 0.84124 0.77144 0.76386 0.75805 1.21406 1.20320 1.21127 1.63633 1.07752 1.51162 1.01383 1.22705 0.89028 1.01503 0.93111 1.22831 0.96686 0.99577 0.97057 1.23013 0.97614 0.97293 0.87044 0.94007 1.62067 1.08004 1.53098 1.02805 1.22391 0.95737 0.93825 1.00550 1.22365 0.92184 0.99909 0.97856 1.22865 0.95540 0.97549 0.91857 0.93351 0.96174 0.92919 0.92026 0.93757 0.90781 0.90218 0.91986 0.96015 0.91640 0.91028 0.91179 0.91787 0.96005 0.90657 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.37 37.16 0.31 -2.79 16 2 C 0.18 4.52 1.20 -68.86 -0.08 4.44 16 3 H -0.01 -0.24 6.49 -51.93 -0.34 -0.58 16 4 C -0.59 -16.79 8.22 -34.44 -0.28 -17.07 16 5 H 0.06 1.95 7.65 -52.49 -0.40 1.55 16 6 C 0.03 1.00 5.22 -17.82 -0.09 0.91 16 7 N -0.90 -27.79 13.70 55.43 0.76 -27.03 16 8 Si 1.04 25.38 26.37 -169.99 -4.48 20.90 16 9 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.34 5.97 56.52 0.34 -6.00 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 N -0.51 -11.25 5.02 -224.67 -1.13 -12.38 16 13 C 0.06 1.29 5.72 -2.29 -0.01 1.28 16 14 C -0.12 -1.95 5.36 -24.59 -0.13 -2.08 16 15 C 0.06 0.94 2.62 -65.89 -0.17 0.77 16 16 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 17 N -0.54 -7.32 4.84 -240.98 -1.17 -8.49 16 18 C 0.02 0.27 9.38 60.06 0.56 0.84 16 19 C 0.03 0.28 9.25 60.06 0.56 0.84 16 20 C 0.05 0.93 4.85 -2.84 -0.01 0.91 16 21 H 0.05 1.13 5.76 -51.93 -0.30 0.83 16 22 H 0.02 0.40 6.72 -51.93 -0.35 0.05 16 23 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.27 8.30 8.73 -40.82 -0.36 7.95 16 25 H 0.04 0.93 7.77 -51.93 -0.40 0.53 16 26 H 0.07 1.53 7.97 -51.93 -0.41 1.12 16 27 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 31 H 0.07 0.87 7.16 -51.93 -0.37 0.49 16 32 H 0.07 0.77 7.32 -51.93 -0.38 0.39 16 33 H 0.06 0.61 8.03 -51.93 -0.42 0.19 16 34 H 0.02 0.24 8.13 -51.93 -0.42 -0.19 16 35 H 0.08 1.37 7.84 -51.93 -0.41 0.96 16 36 H 0.05 0.84 6.34 -51.93 -0.33 0.51 16 LS Contribution 274.96 15.07 4.14 4.14 Total: -1.00 -30.09 274.96 -7.51 -37.60 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -6.28 Total: -2.79 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 0.64 Total: -11.96 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -1.54 Total: -47.90 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -4.48 Total: 20.90 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.09 -7.51 -37.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220114524.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.376 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds