Wall clock time and date at job start Mon Mar 30 2020 03:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08996 * 109.46516 * 2 1 4 4 C 1.50694 * 109.46883 * 120.00107 * 2 1 3 5 5 H 1.07996 * 120.00238 * 114.24007 * 4 2 1 6 6 C 1.37880 * 119.99810 * 294.23476 * 4 2 1 7 7 N 1.31519 * 119.99660 * 158.58243 * 6 4 2 8 8 Si 1.86799 * 120.00227 * 338.30668 * 6 4 2 9 9 H 1.48500 * 109.47007 * 270.27145 * 8 6 4 10 10 H 1.48499 * 109.47050 * 30.27616 * 8 6 4 11 11 H 1.48503 * 109.46959 * 150.27304 * 8 6 4 12 12 N 1.46899 * 109.46862 * 239.99952 * 2 1 3 13 13 C 1.47841 * 110.99571 * 180.84206 * 12 2 1 14 14 C 1.54917 * 104.79684 * 213.63667 * 13 12 2 15 15 C 1.55139 * 101.64991 * 37.07004 * 14 13 12 16 16 H 1.08999 * 110.70534 * 82.72851 * 15 14 13 17 17 N 1.46899 * 110.85645 * 205.89475 * 15 14 13 18 18 C 1.46897 * 111.00216 * 177.93284 * 17 15 14 19 19 C 1.46901 * 110.99755 * 301.88467 * 17 15 14 20 20 C 1.47440 * 111.00054 * 60.00158 * 12 2 1 21 21 H 1.09003 * 109.46845 * 293.06913 * 1 2 3 22 22 H 1.09000 * 109.47141 * 53.07036 * 1 2 3 23 23 H 1.08998 * 109.46493 * 173.06792 * 1 2 3 24 24 H 0.97006 * 119.99746 * 354.65576 * 7 6 4 25 25 H 1.08994 * 110.37784 * 332.46292 * 13 12 2 26 26 H 1.08998 * 110.37671 * 94.80934 * 13 12 2 27 27 H 1.08996 * 110.99046 * 278.98149 * 14 13 12 28 28 H 1.08991 * 111.02272 * 155.17568 * 14 13 12 29 29 H 1.08995 * 109.47488 * 59.99835 * 18 17 15 30 30 H 1.09000 * 109.46992 * 180.02562 * 18 17 15 31 31 H 1.08997 * 109.46968 * 299.99634 * 18 17 15 32 32 H 1.08998 * 109.47145 * 65.45870 * 19 17 15 33 33 H 1.09000 * 109.46638 * 185.44971 * 19 17 15 34 34 H 1.08992 * 109.47275 * 305.45372 * 19 17 15 35 35 H 1.09006 * 109.88895 * 242.65946 * 20 12 2 36 36 H 1.09002 * 109.89096 * 3.68775 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5744 -1.6395 1.1341 6 6 1.8000 -0.1741 2.4792 7 7 1.8429 -0.9447 3.5441 8 14 1.4320 1.6484 2.6593 9 1 2.7029 2.3943 2.8424 10 1 0.7425 2.1372 1.4383 11 1 0.5578 1.8624 3.8406 12 7 2.0197 -0.6925 -1.1994 13 6 3.4975 -0.7298 -1.2235 14 6 3.8712 -0.6369 -2.7240 15 6 2.7948 0.3461 -3.2547 16 1 3.0898 1.3786 -3.0672 17 7 2.5496 0.1299 -4.6869 18 6 1.4959 1.0258 -5.1818 19 6 3.7862 0.2924 -5.4630 20 6 1.5470 -0.0239 -2.4256 21 1 -0.3633 0.4027 0.9455 22 1 -0.3633 0.6175 -0.8215 23 1 -0.3632 -1.0202 -0.1240 24 1 1.9607 -1.9025 3.4453 25 1 3.9075 0.1195 -0.6771 26 1 3.8604 -1.6660 -0.7993 27 1 3.7849 -1.6093 -3.2088 28 1 4.8726 -0.2262 -2.8528 29 1 1.7997 2.0618 -5.0318 30 1 1.3343 0.8444 -6.2444 31 1 0.5716 0.8356 -4.6364 32 1 4.4922 -0.4920 -5.1902 33 1 3.5592 0.2229 -6.5268 34 1 4.2248 1.2668 -5.2479 35 1 0.9106 -0.7011 -2.9954 36 1 0.9908 0.8769 -2.1659 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220114524.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:01 Heat of formation + Delta-G solvation = -9.937421 kcal Electronic energy + Delta-G solvation = -14963.623332 eV Core-core repulsion = 12674.879487 eV Total energy + Delta-G solvation = -2288.743845 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.47027 -37.63820 -35.19577 -33.15383 -30.09475 -29.43230 -28.11037 -26.65547 -24.41255 -22.79550 -21.42062 -20.59997 -19.61734 -17.31021 -17.23366 -15.85096 -15.64435 -15.41045 -15.26880 -14.79876 -14.28442 -14.18782 -13.72902 -13.58800 -13.22415 -13.08347 -12.84087 -12.52427 -12.37054 -12.15785 -12.07490 -11.91818 -11.82897 -11.70469 -11.54670 -10.99669 -10.44840 -9.34479 -8.97969 -8.74288 -6.31644 1.44429 1.48809 1.68263 2.48162 2.92434 3.03016 3.30709 3.58244 3.88249 4.13880 4.27804 4.41763 4.47509 4.51585 4.55191 4.60808 4.68779 4.76521 4.78864 4.80809 4.90819 5.00851 5.02732 5.04139 5.09034 5.10353 5.22455 5.49042 5.87322 6.06970 6.08928 6.11323 6.24279 6.54230 6.75466 7.43237 8.62730 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.047790 B = 0.008256 C = 0.007809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.758711 B = 3390.762753 C = 3584.756853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.187 3.813 3 H -0.009 1.009 4 C -0.593 4.593 5 H 0.021 0.979 6 C -0.015 4.015 7 N -0.934 5.934 8 Si 1.079 2.921 9 H -0.274 1.274 10 H -0.248 1.248 11 H -0.283 1.283 12 N -0.536 5.536 13 C 0.062 3.938 14 C -0.107 4.107 15 C 0.070 3.930 16 H 0.043 0.957 17 N -0.547 5.547 18 C 0.022 3.978 19 C 0.024 3.976 20 C 0.053 3.947 21 H 0.041 0.959 22 H 0.053 0.947 23 H 0.042 0.958 24 H 0.254 0.746 25 H 0.029 0.971 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.026 0.974 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.026 0.974 35 H 0.077 0.923 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.511 6.489 -17.627 18.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.078 3.922 3 H 0.008 0.992 4 C -0.631 4.631 5 H 0.040 0.960 6 C -0.214 4.214 7 N -0.569 5.569 8 Si 0.900 3.100 9 H -0.200 1.200 10 H -0.172 1.172 11 H -0.209 1.209 12 N -0.261 5.261 13 C -0.067 4.067 14 C -0.145 4.145 15 C -0.040 4.040 16 H 0.061 0.939 17 N -0.271 5.271 18 C -0.126 4.126 19 C -0.124 4.124 20 C -0.075 4.075 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.045 0.955 35 H 0.095 0.905 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.870 6.677 -16.560 17.876 hybrid contribution 0.961 -0.164 -0.346 1.035 sum 1.831 6.512 -16.906 18.209 Atomic orbital electron populations 1.22015 0.96857 1.00366 0.99655 1.19675 0.92824 0.91259 0.88421 0.99185 1.22056 1.39318 1.09134 0.92580 0.96021 1.27046 0.93270 1.09240 0.91867 1.70930 1.47494 1.05933 1.32579 0.83605 0.77936 0.71333 0.77092 1.20018 1.17200 1.20874 1.63492 1.08859 1.51815 1.01904 1.22670 0.88192 0.99741 0.96069 1.22711 0.98136 1.00133 0.93533 1.22805 0.95763 0.96999 0.88426 0.93924 1.62044 1.09534 1.53980 1.01574 1.22451 0.94796 0.93710 1.01626 1.22439 0.91155 1.00190 0.98584 1.22838 0.96756 0.97291 0.90592 0.93973 0.92862 0.93922 0.93764 0.95234 0.92937 0.90005 0.89529 0.95541 0.89607 0.91687 0.91082 0.89863 0.95541 0.90507 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.80 8.37 71.99 0.60 -5.20 16 2 C 0.19 9.04 1.20 44.17 0.05 9.10 16 3 H -0.01 -0.45 6.49 -2.39 -0.02 -0.46 16 4 C -0.59 -34.44 8.22 25.60 0.21 -34.23 16 5 H 0.02 1.40 7.65 -2.91 -0.02 1.38 16 6 C -0.02 -0.90 5.22 84.65 0.44 -0.46 16 7 N -0.93 -59.24 13.70 21.45 0.29 -58.95 16 8 Si 1.08 50.46 26.37 68.60 1.81 52.27 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.25 -10.35 5.97 99.48 0.59 -9.76 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 N -0.54 -23.19 5.02 -864.74 -4.34 -27.54 16 13 C 0.06 2.46 5.72 86.78 0.50 2.96 16 14 C -0.11 -3.18 5.36 31.98 0.17 -3.01 16 15 C 0.07 2.01 2.62 46.10 0.12 2.13 16 16 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 17 N -0.55 -13.15 4.84 -916.33 -4.44 -17.59 16 18 C 0.02 0.44 9.38 127.69 1.20 1.64 16 19 C 0.02 0.45 9.25 127.69 1.18 1.63 16 20 C 0.05 1.85 4.85 86.65 0.42 2.27 16 21 H 0.04 1.89 5.76 -2.39 -0.01 1.87 16 22 H 0.05 1.98 6.72 -2.39 -0.02 1.97 16 23 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 24 H 0.25 16.40 8.73 -92.70 -0.81 15.59 16 25 H 0.03 1.25 7.77 -2.39 -0.02 1.23 16 26 H 0.05 2.27 7.97 -2.39 -0.02 2.25 16 27 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.09 1.37 8.06 -2.39 -0.02 1.35 16 31 H 0.06 1.38 7.16 -2.39 -0.02 1.36 16 32 H 0.07 1.31 7.32 -2.39 -0.02 1.30 16 33 H 0.08 1.25 8.03 -2.39 -0.02 1.23 16 34 H 0.03 0.48 8.13 -2.39 -0.02 0.46 16 35 H 0.08 2.63 7.84 -2.38 -0.02 2.62 16 36 H 0.05 1.62 6.34 -2.39 -0.02 1.61 16 Total: -1.00 -65.79 274.96 -0.91 -66.70 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 0.87 Total: 8.27 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: 4.89 Total: -23.17 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -8.49 Total: -104.08 kcal Atomic # 14 Polarization: 50.46 SS G_CDS: 1.81 Total: 52.27 kcal Total: -65.79 -0.91 -66.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220114524.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.767 kcal (2) G-P(sol) polarization free energy of solvation -65.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds