Wall clock time and date at job start Mon Mar 30 2020 03:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47760 * 2 1 4 4 C 1.50694 * 109.47582 * 239.99535 * 2 1 3 5 5 H 1.08002 * 120.00568 * 240.00382 * 4 2 1 6 6 C 1.37882 * 119.99657 * 59.99981 * 4 2 1 7 7 N 1.31511 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99639 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47497 * 60.00209 * 8 6 4 10 10 H 1.48501 * 109.47108 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47312 * 299.99856 * 8 6 4 12 12 N 1.46910 * 109.47129 * 119.99372 * 2 1 3 13 13 C 1.47439 * 110.99963 * 179.87325 * 12 2 1 14 14 C 1.54313 * 107.23329 * 123.26232 * 13 12 2 15 15 C 1.55145 * 103.01735 * 22.28044 * 14 13 12 16 16 H 1.09003 * 110.99182 * 82.44400 * 15 14 13 17 17 N 1.46899 * 110.99068 * 206.21823 * 15 14 13 18 18 C 1.46895 * 111.00295 * 174.94696 * 17 15 14 19 19 C 1.46907 * 111.00022 * 298.90416 * 17 15 14 20 20 C 1.47835 * 111.00103 * 300.72104 * 12 2 1 21 21 H 1.08998 * 109.47199 * 300.00685 * 1 2 3 22 22 H 1.09005 * 109.46822 * 60.00068 * 1 2 3 23 23 H 1.09000 * 109.47101 * 180.02562 * 1 2 3 24 24 H 0.97003 * 120.00125 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.88780 * 242.66732 * 13 12 2 26 26 H 1.08999 * 109.88805 * 3.69041 * 13 12 2 27 27 H 1.09001 * 110.71306 * 140.66426 * 14 13 12 28 28 H 1.08999 * 110.70903 * 263.72851 * 14 13 12 29 29 H 1.09007 * 109.47150 * 60.00174 * 18 17 15 30 30 H 1.09003 * 109.47751 * 179.97438 * 18 17 15 31 31 H 1.08998 * 109.47114 * 300.00396 * 18 17 15 32 32 H 1.08998 * 109.47331 * 65.43533 * 19 17 15 33 33 H 1.08999 * 109.47164 * 185.43103 * 19 17 15 34 34 H 1.09000 * 109.46997 * 305.42579 * 19 17 15 35 35 H 1.09007 * 110.37299 * 332.46337 * 20 12 2 36 36 H 1.08994 * 110.37831 * 94.80333 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8260 -2.5204 -4.0076 10 1 1.8262 -0.4209 -5.2204 11 1 3.8066 -1.1211 -4.0079 12 7 2.0197 -0.6924 1.1996 13 6 3.4935 -0.7147 1.2321 14 6 3.9315 -0.0572 2.5577 15 6 2.6765 -0.2128 3.4564 16 1 2.6414 -1.2034 3.9099 17 7 2.6323 0.8354 4.4846 18 6 1.3861 0.7614 5.2587 19 6 3.8051 0.7580 5.3660 20 6 1.5315 -0.0320 2.4289 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7096 1.1616 -3.4845 25 1 3.8497 -1.7441 1.1933 26 1 3.8916 -0.1527 0.3873 27 1 4.7817 -0.5865 2.9881 28 1 4.1715 0.9950 2.4052 29 1 1.3192 -0.2107 5.7475 30 1 1.3796 1.5481 6.0131 31 1 0.5350 0.8913 4.5904 32 1 4.7053 0.9812 4.7935 33 1 3.7002 1.4814 6.1746 34 1 3.8797 -0.2458 5.7841 35 1 1.3508 1.0270 2.2445 36 1 0.6224 -0.5167 2.7847 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220114594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:04 Heat of formation + Delta-G solvation = 11.198632 kcal Electronic energy + Delta-G solvation = -14896.032899 eV Core-core repulsion = 12608.205583 eV Total energy + Delta-G solvation = -2287.827317 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.88720 -36.13603 -33.26292 -30.81822 -28.58196 -27.58221 -26.84197 -25.01578 -23.24861 -21.14878 -19.73145 -19.23434 -16.11322 -15.82019 -15.64209 -14.52018 -14.45477 -14.16873 -13.34172 -13.01004 -12.68197 -12.51959 -12.26915 -11.82274 -11.71129 -11.61819 -11.09141 -10.86794 -10.67792 -10.67001 -10.46702 -10.28450 -10.11945 -9.88807 -9.68087 -8.86502 -8.38934 -8.23051 -7.11286 -5.96627 -4.00959 3.35022 3.39123 3.42246 4.03342 4.45599 4.93828 5.14732 5.29911 5.31175 5.36994 5.41563 5.54122 5.63127 5.63770 5.85084 5.90403 5.96952 6.16757 6.23475 6.42256 6.48269 6.73284 6.76979 6.89830 7.10735 7.13407 7.14748 7.26841 7.56828 7.75652 7.88811 8.23856 8.39070 8.63436 9.05791 9.63771 11.10160 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055445 B = 0.007546 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.887173 B = 3709.830228 C = 4018.501205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.209 3.791 3 H 0.000 1.000 4 C -0.502 4.502 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.526 5.526 13 C 0.055 3.945 14 C -0.133 4.133 15 C 0.070 3.930 16 H 0.050 0.950 17 N -0.540 5.540 18 C 0.025 3.975 19 C 0.026 3.974 20 C 0.057 3.943 21 H 0.006 0.994 22 H 0.084 0.916 23 H 0.033 0.967 24 H 0.260 0.740 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.022 0.978 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.022 0.978 35 H 0.049 0.951 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.357 -0.362 12.404 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.103 3.897 3 H 0.018 0.982 4 C -0.541 4.541 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.251 5.251 13 C -0.073 4.073 14 C -0.171 4.171 15 C -0.039 4.039 16 H 0.068 0.932 17 N -0.264 5.264 18 C -0.124 4.124 19 C -0.122 4.122 20 C -0.071 4.071 21 H 0.025 0.975 22 H 0.103 0.897 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.084 -0.295 11.975 12.369 hybrid contribution 0.539 -0.398 -0.385 0.773 sum 3.623 -0.694 11.590 12.163 Atomic orbital electron populations 1.21810 0.97810 0.99512 0.99891 1.19430 0.92360 0.91910 0.86032 0.98246 1.21103 1.30947 1.12241 0.89805 0.92098 1.24933 0.95269 0.95091 0.98983 1.69886 1.36976 1.23025 1.23454 0.86585 0.79059 0.79762 0.82126 1.20260 1.21389 1.20366 1.63697 1.06736 1.52394 1.02287 1.22580 0.89679 0.99684 0.95400 1.22856 0.96355 1.01458 0.96471 1.22898 0.97277 0.91810 0.91879 0.93205 1.62020 1.02337 1.47884 1.14140 1.22378 0.92770 0.99596 0.97620 1.22354 0.94035 0.99493 0.96318 1.22891 0.95985 0.97973 0.90280 0.97463 0.89702 0.94823 0.92965 0.92184 0.91534 0.92142 0.91025 0.95938 0.91790 0.90977 0.91321 0.91857 0.95972 0.93324 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 8.86 37.16 0.33 -3.00 16 2 C 0.21 5.43 1.65 -68.86 -0.11 5.32 16 3 H 0.00 0.00 8.10 -51.93 -0.42 -0.42 16 4 C -0.50 -14.03 7.68 -34.44 -0.26 -14.29 16 5 H 0.06 1.70 7.43 -52.49 -0.39 1.31 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.89 11.32 55.43 0.63 -25.26 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.53 -11.77 5.02 -224.69 -1.13 -12.90 16 13 C 0.06 1.11 6.05 -2.84 -0.02 1.09 16 14 C -0.13 -2.19 5.39 -24.91 -0.13 -2.32 16 15 C 0.07 1.14 2.69 -65.57 -0.18 0.96 16 16 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 17 N -0.54 -7.77 4.92 -240.59 -1.18 -8.95 16 18 C 0.02 0.31 9.37 60.06 0.56 0.87 16 19 C 0.03 0.31 9.30 60.07 0.56 0.87 16 20 C 0.06 1.10 3.88 -2.31 -0.01 1.09 16 21 H 0.01 0.15 7.04 -51.93 -0.37 -0.22 16 22 H 0.08 2.32 6.07 -51.93 -0.32 2.01 16 23 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.07 1.47 7.04 -51.93 -0.37 1.11 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.02 0.26 8.14 -51.92 -0.42 -0.16 16 30 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 31 H 0.07 0.94 7.16 -51.93 -0.37 0.56 16 32 H 0.07 0.79 7.40 -51.93 -0.38 0.41 16 33 H 0.06 0.64 8.03 -51.93 -0.42 0.22 16 34 H 0.02 0.25 8.13 -51.93 -0.42 -0.18 16 35 H 0.05 1.01 7.58 -51.93 -0.39 0.62 16 36 H 0.06 1.17 8.01 -51.93 -0.42 0.76 16 LS Contribution 279.51 15.07 4.21 4.21 Total: -1.00 -29.00 279.51 -8.20 -37.20 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -6.35 Total: -2.99 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 0.64 Total: -7.88 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -1.68 Total: -47.11 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.00 -8.20 -37.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220114594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.399 kcal (2) G-P(sol) polarization free energy of solvation -28.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds