Wall clock time and date at job start Mon Mar 30 2020 03:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47760 * 2 1 4 4 C 1.50694 * 109.47582 * 239.99535 * 2 1 3 5 5 H 1.08002 * 120.00568 * 240.00382 * 4 2 1 6 6 C 1.37882 * 119.99657 * 59.99981 * 4 2 1 7 7 N 1.31511 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99639 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47497 * 60.00209 * 8 6 4 10 10 H 1.48501 * 109.47108 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47312 * 299.99856 * 8 6 4 12 12 N 1.46910 * 109.47129 * 119.99372 * 2 1 3 13 13 C 1.47439 * 110.99963 * 179.87325 * 12 2 1 14 14 C 1.54313 * 107.23329 * 123.26232 * 13 12 2 15 15 C 1.55145 * 103.01735 * 22.28044 * 14 13 12 16 16 H 1.09003 * 110.99182 * 82.44400 * 15 14 13 17 17 N 1.46899 * 110.99068 * 206.21823 * 15 14 13 18 18 C 1.46895 * 111.00295 * 174.94696 * 17 15 14 19 19 C 1.46907 * 111.00022 * 298.90416 * 17 15 14 20 20 C 1.47835 * 111.00103 * 300.72104 * 12 2 1 21 21 H 1.08998 * 109.47199 * 300.00685 * 1 2 3 22 22 H 1.09005 * 109.46822 * 60.00068 * 1 2 3 23 23 H 1.09000 * 109.47101 * 180.02562 * 1 2 3 24 24 H 0.97003 * 120.00125 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.88780 * 242.66732 * 13 12 2 26 26 H 1.08999 * 109.88805 * 3.69041 * 13 12 2 27 27 H 1.09001 * 110.71306 * 140.66426 * 14 13 12 28 28 H 1.08999 * 110.70903 * 263.72851 * 14 13 12 29 29 H 1.09007 * 109.47150 * 60.00174 * 18 17 15 30 30 H 1.09003 * 109.47751 * 179.97438 * 18 17 15 31 31 H 1.08998 * 109.47114 * 300.00396 * 18 17 15 32 32 H 1.08998 * 109.47331 * 65.43533 * 19 17 15 33 33 H 1.08999 * 109.47164 * 185.43103 * 19 17 15 34 34 H 1.09000 * 109.46997 * 305.42579 * 19 17 15 35 35 H 1.09007 * 110.37299 * 332.46337 * 20 12 2 36 36 H 1.08994 * 110.37831 * 94.80333 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0078 9 1 1.8260 -2.5204 -4.0076 10 1 1.8262 -0.4209 -5.2204 11 1 3.8066 -1.1211 -4.0079 12 7 2.0197 -0.6924 1.1996 13 6 3.4935 -0.7147 1.2321 14 6 3.9315 -0.0572 2.5577 15 6 2.6765 -0.2128 3.4564 16 1 2.6414 -1.2034 3.9099 17 7 2.6323 0.8354 4.4846 18 6 1.3861 0.7614 5.2587 19 6 3.8051 0.7580 5.3660 20 6 1.5315 -0.0320 2.4289 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7096 1.1616 -3.4845 25 1 3.8497 -1.7441 1.1933 26 1 3.8916 -0.1527 0.3873 27 1 4.7817 -0.5865 2.9881 28 1 4.1715 0.9950 2.4052 29 1 1.3192 -0.2107 5.7475 30 1 1.3796 1.5481 6.0131 31 1 0.5350 0.8913 4.5904 32 1 4.7053 0.9812 4.7935 33 1 3.7002 1.4814 6.1746 34 1 3.8797 -0.2458 5.7841 35 1 1.3508 1.0270 2.2445 36 1 0.6224 -0.5167 2.7847 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220114594.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:03 Heat of formation + Delta-G solvation = -9.329968 kcal Electronic energy + Delta-G solvation = -14896.923086 eV Core-core repulsion = 12608.205583 eV Total energy + Delta-G solvation = -2288.717503 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.35981 -37.56240 -35.17449 -32.66586 -30.01129 -29.18014 -28.08924 -27.03832 -24.53385 -22.85705 -21.13906 -20.99073 -18.20237 -17.32137 -17.10662 -16.34196 -15.56578 -15.43945 -14.95668 -14.77080 -14.27241 -14.13422 -13.54930 -13.16743 -13.11538 -13.01206 -12.79620 -12.65825 -12.49677 -12.24899 -12.15054 -11.97786 -11.74364 -11.61762 -11.49118 -10.94994 -10.52850 -9.29555 -8.94319 -8.11114 -6.23444 1.42419 1.44718 1.52367 2.42454 2.89490 3.16663 3.53672 3.71547 3.85624 4.19338 4.29400 4.45922 4.50318 4.58005 4.68021 4.76012 4.79446 4.85927 4.89959 4.98694 5.02208 5.04317 5.07507 5.09904 5.15240 5.30493 5.46921 5.71867 5.76672 6.10652 6.13707 6.25319 6.39751 6.68670 6.90804 7.45737 8.94940 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.055445 B = 0.007546 C = 0.006966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.887173 B = 3709.830228 C = 4018.501205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.216 3.784 3 H -0.039 1.039 4 C -0.520 4.520 5 H 0.056 0.944 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.536 5.536 13 C 0.052 3.948 14 C -0.120 4.120 15 C 0.084 3.916 16 H 0.059 0.941 17 N -0.557 5.557 18 C 0.024 3.976 19 C 0.026 3.974 20 C 0.058 3.942 21 H 0.025 0.975 22 H 0.060 0.940 23 H 0.031 0.969 24 H 0.262 0.738 25 H 0.069 0.931 26 H 0.037 0.963 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.032 0.968 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.031 0.969 35 H 0.028 0.972 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.182 -1.166 13.674 14.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.109 3.891 3 H -0.022 1.022 4 C -0.558 4.558 5 H 0.075 0.925 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.196 1.196 12 N -0.261 5.261 13 C -0.076 4.076 14 C -0.159 4.159 15 C -0.025 4.025 16 H 0.077 0.923 17 N -0.281 5.281 18 C -0.124 4.124 19 C -0.121 4.121 20 C -0.070 4.070 21 H 0.044 0.956 22 H 0.079 0.921 23 H 0.050 0.950 24 H 0.071 0.929 25 H 0.087 0.913 26 H 0.056 0.944 27 H 0.110 0.890 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.916 -1.102 13.271 13.881 hybrid contribution 0.275 -0.117 -0.719 0.779 sum 4.191 -1.220 12.552 13.289 Atomic orbital electron populations 1.21628 0.97455 0.99137 0.99620 1.19194 0.92602 0.89912 0.87416 1.02164 1.21360 1.31187 1.12289 0.90995 0.92538 1.25748 0.95355 0.95769 1.01996 1.70019 1.37767 1.24198 1.24166 0.85548 0.78733 0.78665 0.78306 1.19641 1.20849 1.19602 1.63620 1.08293 1.52035 1.02155 1.22597 0.88349 1.00136 0.96536 1.22746 0.97613 1.00950 0.94555 1.22681 0.95122 0.92909 0.91779 0.92350 1.61980 1.04096 1.47088 1.14980 1.22417 0.91454 1.00915 0.97579 1.22419 0.92757 1.00662 0.96312 1.22886 0.97630 0.96441 0.90049 0.95555 0.92100 0.95014 0.92875 0.91278 0.94418 0.89033 0.91826 0.94957 0.89811 0.92223 0.91308 0.90037 0.95020 0.95313 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.19 8.86 71.98 0.64 -5.55 16 2 C 0.22 11.55 1.65 44.16 0.07 11.62 16 3 H -0.04 -2.34 8.10 -2.39 -0.02 -2.36 16 4 C -0.52 -29.58 7.68 25.60 0.20 -29.38 16 5 H 0.06 3.19 7.43 -2.91 -0.02 3.17 16 6 C 0.01 0.55 5.30 84.66 0.45 1.00 16 7 N -0.92 -54.42 11.32 21.45 0.24 -54.17 16 8 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.54 -24.15 5.02 -864.79 -4.34 -28.49 16 13 C 0.05 2.09 6.05 86.65 0.52 2.62 16 14 C -0.12 -3.77 5.39 31.77 0.17 -3.60 16 15 C 0.08 2.57 2.69 46.30 0.12 2.70 16 16 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 17 N -0.56 -14.73 4.92 -915.08 -4.50 -19.23 16 18 C 0.02 0.54 9.37 127.69 1.20 1.74 16 19 C 0.03 0.53 9.30 127.69 1.19 1.72 16 20 C 0.06 2.22 3.88 86.77 0.34 2.56 16 21 H 0.03 1.20 7.04 -2.39 -0.02 1.18 16 22 H 0.06 3.42 6.07 -2.38 -0.01 3.41 16 23 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.04 1.71 7.04 -2.39 -0.02 1.69 16 27 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.08 1.53 8.06 -2.39 -0.02 1.51 16 31 H 0.06 1.47 7.16 -2.39 -0.02 1.45 16 32 H 0.07 1.38 7.40 -2.39 -0.02 1.36 16 33 H 0.08 1.35 8.03 -2.39 -0.02 1.33 16 34 H 0.03 0.59 8.13 -2.39 -0.02 0.57 16 35 H 0.03 1.21 7.58 -2.38 -0.02 1.19 16 36 H 0.07 2.52 8.01 -2.39 -0.02 2.50 16 Total: -1.00 -62.50 279.51 -0.66 -63.16 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.01 Total: 6.81 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: 4.90 Total: -14.58 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -8.60 Total: -101.89 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -62.50 -0.66 -63.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220114594.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.835 kcal (2) G-P(sol) polarization free energy of solvation -62.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds