Wall clock time and date at job start Mon Mar 30 2020 03:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47224 * 2 1 4 4 C 1.50701 * 109.47022 * 239.99920 * 2 1 3 5 5 H 1.08003 * 119.99802 * 239.99637 * 4 2 1 6 6 C 1.37869 * 120.00134 * 60.00006 * 4 2 1 7 7 N 1.31521 * 120.00124 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00200 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46686 * 90.00238 * 8 6 4 10 10 H 1.48497 * 109.47325 * 209.99999 * 8 6 4 11 11 H 1.48496 * 109.47266 * 330.00034 * 8 6 4 12 12 N 1.46900 * 109.47224 * 119.99571 * 2 1 3 13 13 C 1.46902 * 110.99917 * 176.04580 * 12 2 1 14 14 C 1.46893 * 111.00230 * 300.00415 * 12 2 1 15 15 H 1.08998 * 110.82034 * 49.30490 * 14 12 2 16 16 C 1.55241 * 110.89669 * 285.85404 * 14 12 2 17 17 C 1.54267 * 104.23392 * 203.79312 * 16 14 12 18 18 C 1.53879 * 106.59470 * 23.61393 * 17 16 14 19 19 H 1.08999 * 110.02897 * 119.28608 * 18 17 16 20 20 N 1.46900 * 110.02864 * 240.71152 * 18 17 16 21 21 C 1.54262 * 106.60318 * 359.97438 * 18 17 16 22 22 H 1.09002 * 109.47193 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47133 * 300.00049 * 1 2 3 24 24 H 1.08996 * 109.47301 * 60.00116 * 1 2 3 25 25 H 0.96997 * 120.00039 * 179.97438 * 7 6 4 26 26 H 1.08997 * 109.47079 * 176.64372 * 13 12 2 27 27 H 1.09004 * 109.47493 * 296.63955 * 13 12 2 28 28 H 1.08995 * 109.47045 * 56.63856 * 13 12 2 29 29 H 1.09001 * 110.46812 * 85.10228 * 16 14 12 30 30 H 1.08998 * 110.58174 * 322.54290 * 16 14 12 31 31 H 1.08993 * 110.03233 * 264.32563 * 17 16 14 32 32 H 1.09003 * 110.03085 * 142.89434 * 17 16 14 33 33 H 1.00899 * 111.00118 * 297.17165 * 20 18 17 34 34 H 1.00902 * 111.00215 * 61.12467 * 20 18 17 35 35 H 1.09001 * 110.48897 * 95.06715 * 21 18 17 36 36 H 1.08992 * 110.49064 * 217.58323 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.3446 -2.1616 -4.4123 10 1 2.4872 -0.1404 -5.1120 11 1 3.6307 -1.7567 -3.7120 12 7 2.0196 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1870 14 6 1.5486 -0.0263 2.4210 15 1 0.4747 0.1544 2.3743 16 6 2.3199 1.2993 2.6615 17 6 2.1924 1.5424 4.1795 18 6 1.9324 0.1695 4.8241 19 1 2.7311 -0.0707 5.5259 20 7 0.6375 0.1765 5.5178 21 6 1.9103 -0.8598 3.6753 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7086 1.1612 -3.4844 26 1 3.8249 -1.2576 2.1134 27 1 3.7998 -1.4035 0.3396 28 1 3.9179 0.2020 1.0989 29 1 1.8588 2.1150 2.1045 30 1 3.3670 1.1900 2.3792 31 1 1.3578 2.2138 4.3813 32 1 3.1173 1.9683 4.5684 33 1 0.6355 0.8456 6.2730 34 1 -0.1173 0.3569 4.8729 35 1 2.8911 -1.3202 3.5567 36 1 1.1523 -1.6210 3.8595 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223176936.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:55 Heat of formation + Delta-G solvation = 0.622032 kcal Electronic energy + Delta-G solvation = -15046.544140 eV Core-core repulsion = 12758.258188 eV Total energy + Delta-G solvation = -2288.285952 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.01538 -35.84640 -32.88246 -31.07404 -29.20806 -28.08030 -26.38509 -24.70476 -23.79303 -20.82278 -19.66424 -18.37068 -16.45116 -16.16478 -15.40348 -14.86358 -14.40791 -13.97069 -13.37055 -13.20353 -12.95247 -12.32126 -11.93822 -11.70802 -11.41620 -11.10314 -10.96654 -10.77772 -10.66241 -10.53304 -10.44076 -10.13904 -10.02169 -9.93427 -9.58481 -8.83348 -8.60340 -8.39649 -7.05404 -5.99375 -4.03608 3.31788 3.38011 3.41208 4.41841 4.65030 4.79486 4.92010 5.18091 5.32147 5.40568 5.72210 5.73931 5.85321 5.88861 5.98659 6.10770 6.18131 6.32322 6.38557 6.52211 6.60012 6.71192 6.85731 6.93672 7.08617 7.19527 7.25505 7.50341 7.57260 7.77505 7.85885 8.25166 8.36553 8.65803 9.03533 9.61476 11.07436 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057669 B = 0.007692 C = 0.007419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.412183 B = 3639.387531 C = 3773.417065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.213 3.787 3 H -0.001 1.001 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.528 5.528 13 C 0.034 3.966 14 C 0.078 3.922 15 H 0.085 0.915 16 C -0.160 4.160 17 C -0.153 4.153 18 C 0.086 3.914 19 H 0.076 0.924 20 N -0.843 5.843 21 C -0.113 4.113 22 H 0.034 0.966 23 H 0.007 0.993 24 H 0.084 0.916 25 H 0.260 0.740 26 H 0.045 0.955 27 H 0.071 0.929 28 H 0.017 0.983 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.334 0.666 34 H 0.342 0.658 35 H 0.072 0.928 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.687 0.886 11.377 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.107 3.893 3 H 0.017 0.983 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.251 5.251 13 C -0.114 4.114 14 C -0.032 4.032 15 H 0.103 0.897 16 C -0.200 4.200 17 C -0.193 4.193 18 C -0.026 4.026 19 H 0.094 0.906 20 N -0.372 5.372 21 C -0.151 4.151 22 H 0.053 0.947 23 H 0.026 0.974 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.035 0.965 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.154 0.846 35 H 0.091 0.909 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.577 -0.261 11.382 11.493 hybrid contribution 0.577 1.584 -1.226 2.084 sum 2.154 1.322 10.156 10.466 Atomic orbital electron populations 1.21849 0.97927 0.99587 0.99723 1.19222 0.92169 0.92049 0.85879 0.98324 1.21196 1.30888 1.12205 0.89869 0.91917 1.24934 0.95264 0.95083 0.99011 1.69896 1.37084 1.23096 1.23325 0.86530 0.79222 0.79298 0.82540 1.20668 1.21389 1.19965 1.62215 1.09124 1.51706 1.02025 1.22270 0.89231 0.99313 1.00602 1.22806 0.99174 0.90451 0.90738 0.89749 1.23092 1.02085 1.00165 0.94618 1.22951 1.01096 0.98009 0.97247 1.22080 0.91355 0.93975 0.95178 0.90628 1.58976 1.04838 1.58098 1.15273 1.22500 1.02422 0.97335 0.92835 0.94720 0.97434 0.89750 0.93056 0.93616 0.91033 0.96511 0.92110 0.91041 0.92446 0.92376 0.85393 0.84561 0.90928 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.78 37.15 0.33 -2.95 16 2 C 0.21 5.38 1.93 -68.87 -0.13 5.25 16 3 H 0.00 -0.02 7.61 -51.93 -0.40 -0.42 16 4 C -0.50 -13.86 7.96 -34.44 -0.27 -14.13 16 5 H 0.06 1.72 6.40 -52.48 -0.34 1.39 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.65 11.32 55.43 0.63 -25.03 16 8 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.53 -11.37 4.64 -225.70 -1.05 -12.41 16 13 C 0.03 0.67 8.26 60.07 0.50 1.17 16 14 C 0.08 1.41 2.75 -65.54 -0.18 1.23 16 15 H 0.08 1.59 5.91 -51.93 -0.31 1.29 16 16 C -0.16 -2.66 5.53 -24.88 -0.14 -2.80 16 17 C -0.15 -2.01 6.57 -25.61 -0.17 -2.18 16 18 C 0.09 1.11 4.04 -66.60 -0.27 0.84 16 19 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 20 N -0.84 -9.87 9.11 -3.72 -0.03 -9.91 16 21 C -0.11 -1.72 6.00 -25.08 -0.15 -1.87 16 22 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.01 0.15 6.20 -51.93 -0.32 -0.17 16 24 H 0.08 2.28 6.07 -51.93 -0.32 1.96 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.05 0.78 5.93 -51.93 -0.31 0.47 16 27 H 0.07 1.51 6.36 -51.93 -0.33 1.18 16 28 H 0.02 0.33 6.31 -51.93 -0.33 0.00 16 29 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 30 H 0.07 1.23 5.63 -51.93 -0.29 0.94 16 31 H 0.06 0.71 7.92 -51.93 -0.41 0.30 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.33 3.23 9.07 -39.29 -0.36 2.87 16 34 H 0.34 4.02 8.99 -39.29 -0.35 3.67 16 35 H 0.07 1.11 5.92 -51.93 -0.31 0.81 16 36 H 0.07 1.18 8.04 -51.93 -0.42 0.76 16 LS Contribution 270.23 15.07 4.07 4.07 Total: -1.00 -28.30 270.23 -7.59 -35.89 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.60 Total: 4.88 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -0.59 Total: -13.93 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.45 Total: -47.35 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.30 -7.59 -35.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223176936.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.513 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds