Wall clock time and date at job start Mon Mar 30 2020 03:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47224 * 2 1 4 4 C 1.50701 * 109.47022 * 239.99920 * 2 1 3 5 5 H 1.08003 * 119.99802 * 239.99637 * 4 2 1 6 6 C 1.37869 * 120.00134 * 60.00006 * 4 2 1 7 7 N 1.31521 * 120.00124 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00200 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46686 * 90.00238 * 8 6 4 10 10 H 1.48497 * 109.47325 * 209.99999 * 8 6 4 11 11 H 1.48496 * 109.47266 * 330.00034 * 8 6 4 12 12 N 1.46900 * 109.47224 * 119.99571 * 2 1 3 13 13 C 1.46902 * 110.99917 * 176.04580 * 12 2 1 14 14 C 1.46893 * 111.00230 * 300.00415 * 12 2 1 15 15 H 1.08998 * 110.82034 * 49.30490 * 14 12 2 16 16 C 1.55241 * 110.89669 * 285.85404 * 14 12 2 17 17 C 1.54267 * 104.23392 * 203.79312 * 16 14 12 18 18 C 1.53879 * 106.59470 * 23.61393 * 17 16 14 19 19 H 1.08999 * 110.02897 * 119.28608 * 18 17 16 20 20 N 1.46900 * 110.02864 * 240.71152 * 18 17 16 21 21 C 1.54262 * 106.60318 * 359.97438 * 18 17 16 22 22 H 1.09002 * 109.47193 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47133 * 300.00049 * 1 2 3 24 24 H 1.08996 * 109.47301 * 60.00116 * 1 2 3 25 25 H 0.96997 * 120.00039 * 179.97438 * 7 6 4 26 26 H 1.08997 * 109.47079 * 176.64372 * 13 12 2 27 27 H 1.09004 * 109.47493 * 296.63955 * 13 12 2 28 28 H 1.08995 * 109.47045 * 56.63856 * 13 12 2 29 29 H 1.09001 * 110.46812 * 85.10228 * 16 14 12 30 30 H 1.08998 * 110.58174 * 322.54290 * 16 14 12 31 31 H 1.08993 * 110.03233 * 264.32563 * 17 16 14 32 32 H 1.09003 * 110.03085 * 142.89434 * 17 16 14 33 33 H 1.00899 * 111.00118 * 297.17165 * 20 18 17 34 34 H 1.00902 * 111.00215 * 61.12467 * 20 18 17 35 35 H 1.09001 * 110.48897 * 95.06715 * 21 18 17 36 36 H 1.08992 * 110.49064 * 217.58323 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.3446 -2.1616 -4.4123 10 1 2.4872 -0.1404 -5.1120 11 1 3.6307 -1.7567 -3.7120 12 7 2.0196 -0.6924 1.1995 13 6 3.4851 -0.7944 1.1870 14 6 1.5486 -0.0263 2.4210 15 1 0.4747 0.1544 2.3743 16 6 2.3199 1.2993 2.6615 17 6 2.1924 1.5424 4.1795 18 6 1.9324 0.1695 4.8241 19 1 2.7311 -0.0707 5.5259 20 7 0.6375 0.1765 5.5178 21 6 1.9103 -0.8598 3.6753 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7086 1.1612 -3.4844 26 1 3.8249 -1.2576 2.1134 27 1 3.7998 -1.4035 0.3396 28 1 3.9179 0.2020 1.0989 29 1 1.8588 2.1150 2.1045 30 1 3.3670 1.1900 2.3792 31 1 1.3578 2.2138 4.3813 32 1 3.1173 1.9683 4.5684 33 1 0.6355 0.8456 6.2730 34 1 -0.1173 0.3569 4.8729 35 1 2.8911 -1.3202 3.5567 36 1 1.1523 -1.6210 3.8595 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223176936.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:55 Heat of formation + Delta-G solvation = -19.646117 kcal Electronic energy + Delta-G solvation = -15047.423033 eV Core-core repulsion = 12758.258188 eV Total energy + Delta-G solvation = -2289.164845 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.41227 -37.38725 -34.75975 -32.43912 -31.01605 -29.42668 -27.92754 -26.53712 -25.39353 -22.55549 -20.84505 -19.92578 -18.32215 -17.66748 -16.87731 -16.38904 -15.86946 -15.51837 -14.99654 -14.68100 -14.43716 -14.01300 -13.29948 -13.22192 -13.08836 -12.91552 -12.74854 -12.47510 -12.14779 -12.07452 -11.97702 -11.86702 -11.77340 -11.57066 -11.12971 -10.83061 -10.50598 -9.55704 -8.79420 -8.11350 -6.23063 1.41443 1.42441 1.52416 2.42030 3.16376 3.33898 3.65322 3.74072 3.94224 4.12057 4.41826 4.51501 4.59731 4.65059 4.68492 4.71585 4.79958 4.89054 4.96162 5.01050 5.05016 5.10307 5.22388 5.35360 5.38662 5.44040 5.54151 5.75345 5.81973 6.26957 6.30277 6.44639 6.66984 6.81417 6.93466 7.46484 8.94577 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.057669 B = 0.007692 C = 0.007419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.412183 B = 3639.387531 C = 3773.417065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.220 3.780 3 H -0.036 1.036 4 C -0.521 4.521 5 H 0.059 0.941 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.268 1.268 12 N -0.537 5.537 13 C 0.039 3.961 14 C 0.073 3.927 15 H 0.073 0.927 16 C -0.157 4.157 17 C -0.142 4.142 18 C 0.096 3.904 19 H 0.093 0.907 20 N -0.845 5.845 21 C -0.104 4.104 22 H 0.029 0.971 23 H 0.028 0.972 24 H 0.058 0.942 25 H 0.261 0.739 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.011 0.989 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.349 0.651 34 H 0.341 0.659 35 H 0.075 0.925 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.264 0.379 12.792 12.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.113 3.887 3 H -0.018 1.018 4 C -0.559 4.559 5 H 0.077 0.923 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.193 1.193 12 N -0.260 5.260 13 C -0.109 4.109 14 C -0.036 4.036 15 H 0.091 0.909 16 C -0.197 4.197 17 C -0.182 4.182 18 C -0.016 4.016 19 H 0.111 0.889 20 N -0.375 5.375 21 C -0.142 4.142 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.162 0.838 34 H 0.154 0.846 35 H 0.093 0.907 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.155 -0.768 12.828 13.031 hybrid contribution 0.384 1.757 -1.624 2.423 sum 2.539 0.989 11.204 11.531 Atomic orbital electron populations 1.21663 0.97711 0.99027 0.99500 1.18975 0.92291 0.90245 0.87220 1.01809 1.21496 1.31012 1.12245 0.91145 0.92326 1.25723 0.95424 0.95770 1.01939 1.70025 1.37925 1.24265 1.23971 0.85531 0.78875 0.78218 0.78857 1.20163 1.20978 1.19268 1.62141 1.10145 1.51710 1.02006 1.22242 0.88245 0.98924 1.01510 1.22875 0.98598 0.91819 0.90357 0.90896 1.23008 1.00961 0.98496 0.97220 1.22904 1.02438 0.98673 0.94192 1.21975 0.92472 0.92618 0.94572 0.88917 1.58948 1.04198 1.58811 1.15529 1.22423 1.02210 0.97436 0.92149 0.95222 0.95312 0.92291 0.93008 0.90389 0.92816 0.97088 0.94415 0.91761 0.91506 0.90673 0.83759 0.84619 0.90683 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.08 8.78 71.98 0.63 -5.45 16 2 C 0.22 11.37 1.93 44.17 0.09 11.45 16 3 H -0.04 -2.05 7.61 -2.38 -0.02 -2.07 16 4 C -0.52 -29.15 7.96 25.60 0.20 -28.94 16 5 H 0.06 3.26 6.40 -2.91 -0.02 3.24 16 6 C 0.01 0.55 5.30 84.65 0.45 1.00 16 7 N -0.92 -53.88 11.32 21.45 0.24 -53.64 16 8 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 N -0.54 -23.15 4.64 -867.99 -4.02 -27.17 16 13 C 0.04 1.52 8.26 127.69 1.05 2.58 16 14 C 0.07 2.56 2.75 46.33 0.13 2.69 16 15 H 0.07 2.72 5.91 -2.39 -0.01 2.71 16 16 C -0.16 -5.12 5.53 31.79 0.18 -4.94 16 17 C -0.14 -3.36 6.57 31.32 0.21 -3.15 16 18 C 0.10 2.17 4.04 45.64 0.18 2.35 16 19 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 20 N -0.84 -17.25 9.11 -165.68 -1.51 -18.76 16 21 C -0.10 -2.95 6.00 31.66 0.19 -2.76 16 22 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.03 1.27 6.20 -2.39 -0.01 1.25 16 24 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 25 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 26 H 0.08 2.51 5.93 -2.39 -0.01 2.50 16 27 H 0.05 2.27 6.36 -2.38 -0.02 2.26 16 28 H 0.01 0.43 6.31 -2.39 -0.02 0.42 16 29 H 0.04 1.37 8.08 -2.39 -0.02 1.35 16 30 H 0.06 2.17 5.63 -2.39 -0.01 2.16 16 31 H 0.07 1.47 7.92 -2.39 -0.02 1.46 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.35 5.55 9.07 -89.69 -0.81 4.74 16 34 H 0.34 7.21 8.99 -89.69 -0.81 6.40 16 35 H 0.07 2.09 5.92 -2.39 -0.01 2.08 16 36 H 0.07 2.06 8.04 -2.39 -0.02 2.04 16 Total: -1.00 -60.81 270.23 -0.49 -61.30 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -0.54 Total: 17.18 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 3.31 Total: -25.18 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -5.29 Total: -99.57 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -60.81 -0.49 -61.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223176936.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.654 kcal (2) G-P(sol) polarization free energy of solvation -60.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds