Wall clock time and date at job start Mon Mar 30 2020 02:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47107 * 2 1 4 4 C 1.50695 * 109.47352 * 239.99050 * 2 1 3 5 5 H 1.08000 * 120.00387 * 240.00369 * 4 2 1 6 6 C 1.37879 * 119.99666 * 60.00214 * 4 2 1 7 7 N 1.31516 * 120.00293 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00114 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46994 * 90.00091 * 8 6 4 10 10 H 1.48502 * 109.47594 * 210.00370 * 8 6 4 11 11 H 1.48507 * 109.47014 * 330.00577 * 8 6 4 12 12 N 1.46899 * 109.46391 * 119.99473 * 2 1 3 13 13 C 1.46956 * 111.00293 * 58.95571 * 12 2 1 14 14 C 1.53056 * 109.38342 * 183.17592 * 13 12 2 15 15 N 1.46963 * 109.35944 * 301.62902 * 14 13 12 16 16 C 1.46903 * 110.99595 * 183.16796 * 15 14 13 17 17 C 1.46956 * 110.89784 * 59.28921 * 15 14 13 18 18 C 1.46962 * 110.99604 * 182.75383 * 12 2 1 19 19 H 1.09001 * 109.48625 * 296.77747 * 18 12 2 20 20 C 1.52999 * 109.48916 * 56.84444 * 18 12 2 21 21 H 1.08996 * 109.47603 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47145 * 300.01161 * 1 2 3 23 23 H 1.09003 * 109.46907 * 60.00685 * 1 2 3 24 24 H 0.97003 * 119.99989 * 180.02562 * 7 6 4 25 25 H 1.09002 * 109.48806 * 303.15319 * 13 12 2 26 26 H 1.09002 * 109.49141 * 63.19591 * 13 12 2 27 27 H 1.08992 * 109.49038 * 61.57437 * 14 13 12 28 28 H 1.08994 * 109.48641 * 181.64718 * 14 13 12 29 29 H 1.09005 * 109.46758 * 296.17841 * 16 15 14 30 30 H 1.08995 * 109.47385 * 56.17701 * 16 15 14 31 31 H 1.08996 * 109.47025 * 176.17999 * 16 15 14 32 32 H 1.09002 * 109.48806 * 180.71933 * 17 15 14 33 33 H 1.09002 * 109.50952 * 60.66527 * 17 15 14 34 34 H 1.08994 * 109.47230 * 60.00204 * 20 18 12 35 35 H 1.09004 * 109.47194 * 179.97438 * 20 18 12 36 36 H 1.08999 * 109.47235 * 299.99975 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6533 -1.5887 -1.1311 6 6 1.6994 -0.2396 -2.4826 7 7 0.9437 0.8299 -2.6035 8 14 2.3226 -1.1200 -4.0078 9 1 1.3449 -2.1620 -4.4121 10 1 2.4875 -0.1408 -5.1120 11 1 3.6310 -1.7571 -3.7116 12 7 2.0195 -0.6924 1.1995 13 6 1.5280 -2.0765 1.2462 14 6 1.9931 -2.7372 2.5461 15 7 3.4607 -2.6996 2.6137 16 6 3.9503 -3.3920 3.8133 17 6 3.9523 -1.3155 2.5671 18 6 3.4871 -0.6552 1.2670 19 1 3.9040 -1.1941 0.4161 20 6 3.9630 0.7985 1.2341 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5140 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 0.7091 1.1610 -3.4846 25 1 0.4386 -2.0771 1.2076 26 1 1.9223 -2.6314 0.3949 27 1 1.5762 -2.1988 3.3971 28 1 1.6542 -3.7729 2.5691 29 1 3.6023 -2.8673 4.7031 30 1 3.5717 -4.4140 3.8228 31 1 5.0401 -3.4083 3.8040 32 1 5.0416 -1.3149 2.6057 33 1 3.5579 -0.7602 3.4182 34 1 3.5466 1.3365 2.0856 35 1 5.0515 0.8258 1.2846 36 1 3.6299 1.2690 0.3090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225145730.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:24 Heat of formation + Delta-G solvation = -8.121652 kcal Electronic energy + Delta-G solvation = -15347.212682 eV Core-core repulsion = 13058.547575 eV Total energy + Delta-G solvation = -2288.665107 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.43496 -37.17237 -34.62731 -33.34473 -31.23622 -28.15110 -27.81878 -27.18845 -24.78084 -22.69839 -21.83779 -20.49894 -18.02782 -17.22559 -16.44014 -16.16506 -16.02402 -15.47039 -15.14737 -14.92033 -14.40587 -13.59466 -13.36911 -13.19951 -13.17365 -12.89953 -12.73905 -12.62005 -12.45852 -12.22293 -12.13576 -12.00851 -11.75857 -11.50845 -11.18018 -10.95569 -10.42273 -9.24864 -8.90927 -8.02572 -6.23248 1.36224 1.38363 1.47346 2.40914 3.07737 3.16747 3.38797 4.04468 4.18162 4.24332 4.48044 4.51685 4.61211 4.67160 4.69816 4.80400 4.85568 4.87586 5.00565 5.03483 5.08826 5.16935 5.20997 5.23274 5.39159 5.45283 5.58205 5.73122 6.01097 6.12748 6.18946 6.26215 6.43734 6.69011 6.97197 7.46987 8.93388 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.035859 B = 0.009874 C = 0.009626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.646690 B = 2835.104154 C = 2908.122291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.208 3.792 3 H 0.020 0.980 4 C -0.541 4.541 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.913 5.913 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.276 1.276 12 N -0.534 5.534 13 C 0.063 3.937 14 C 0.067 3.933 15 N -0.564 5.564 16 C 0.029 3.971 17 C 0.073 3.927 18 C 0.087 3.913 19 H 0.019 0.981 20 C -0.132 4.132 21 H 0.029 0.971 22 H 0.027 0.973 23 H 0.059 0.941 24 H 0.261 0.739 25 H 0.070 0.930 26 H 0.017 0.983 27 H 0.038 0.962 28 H 0.088 0.912 29 H 0.029 0.971 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.039 0.961 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.477 -5.285 10.367 12.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.101 3.899 3 H 0.038 0.962 4 C -0.580 4.580 5 H 0.062 0.938 6 C -0.178 4.178 7 N -0.552 5.552 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.201 1.201 12 N -0.259 5.259 13 C -0.066 4.066 14 C -0.061 4.061 15 N -0.289 5.289 16 C -0.119 4.119 17 C -0.055 4.055 18 C -0.022 4.022 19 H 0.037 0.963 20 C -0.190 4.190 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.035 0.965 27 H 0.056 0.944 28 H 0.107 0.893 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.401 -5.169 10.248 12.293 hybrid contribution 0.069 -0.231 -1.320 1.342 sum 4.470 -5.400 8.928 11.351 Atomic orbital electron populations 1.21670 0.97753 0.98986 0.99638 1.19115 0.92187 0.93435 0.85125 0.96213 1.21854 1.31070 1.12289 0.92763 0.93834 1.25565 0.95279 0.95574 1.01381 1.69991 1.37556 1.23814 1.23876 0.85784 0.78665 0.78545 0.79995 1.20328 1.20724 1.20084 1.62669 1.08635 1.14501 1.40055 1.21980 0.99311 0.89227 0.96080 1.22138 0.87277 1.00348 0.96324 1.62101 1.10043 1.16175 1.40563 1.22376 1.01236 0.98887 0.89357 1.22141 0.99806 0.87558 0.95972 1.21465 0.88614 0.96145 0.95993 0.96267 1.21692 1.00715 0.95173 1.01374 0.95183 0.95361 0.92214 0.92947 0.91205 0.96503 0.94359 0.89350 0.95240 0.90541 0.90574 0.89486 0.94312 0.92187 0.90971 0.94272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.04 8.71 71.98 0.63 -5.41 16 2 C 0.21 10.59 2.00 44.17 0.09 10.68 16 3 H 0.02 1.12 6.09 -2.39 -0.01 1.10 16 4 C -0.54 -29.76 7.12 25.60 0.18 -29.58 16 5 H 0.04 2.48 5.80 -2.91 -0.02 2.46 16 6 C 0.02 1.20 5.30 84.65 0.45 1.64 16 7 N -0.91 -52.49 11.32 21.45 0.24 -52.24 16 8 Si 0.94 44.42 29.54 68.60 2.03 46.45 16 9 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 N -0.53 -23.17 4.53 -849.76 -3.85 -27.02 16 13 C 0.06 2.52 4.94 86.31 0.43 2.95 16 14 C 0.07 2.13 5.62 86.31 0.49 2.61 16 15 N -0.56 -17.32 4.97 -921.92 -4.58 -21.90 16 16 C 0.03 0.64 9.60 127.69 1.23 1.87 16 17 C 0.07 2.32 4.90 86.31 0.42 2.74 16 18 C 0.09 3.45 2.23 44.92 0.10 3.55 16 19 H 0.02 0.89 6.74 -2.39 -0.02 0.88 16 20 C -0.13 -4.84 8.87 71.98 0.64 -4.20 16 21 H 0.03 1.41 6.32 -2.39 -0.02 1.40 16 22 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 24 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 25 H 0.07 2.80 6.12 -2.39 -0.01 2.78 16 26 H 0.02 0.77 6.64 -2.39 -0.02 0.75 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.09 2.41 8.13 -2.39 -0.02 2.39 16 29 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.08 1.50 8.13 -2.39 -0.02 1.48 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.04 1.69 6.30 -2.39 -0.02 1.67 16 Total: -1.00 -59.99 270.76 -0.48 -60.47 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.03 Total: 7.39 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 4.65 Total: -13.14 kcal Atomic # 7 Polarization: -92.98 SS G_CDS: -8.19 Total: -101.16 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -59.99 -0.48 -60.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225145730.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.345 kcal (2) G-P(sol) polarization free energy of solvation -59.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds