Wall clock time and date at job start Mon Mar 30 2020 02:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47041 * 2 1 4 4 C 1.50692 * 109.47262 * 239.99800 * 2 1 3 5 5 H 1.08000 * 120.00115 * 269.30338 * 4 2 1 6 6 C 1.37885 * 120.00207 * 89.30379 * 4 2 1 7 7 N 1.31515 * 119.99662 * 353.06381 * 6 4 2 8 8 Si 1.86798 * 119.99963 * 172.79184 * 6 4 2 9 9 H 1.48492 * 109.47448 * 59.99891 * 8 6 4 10 10 H 1.48505 * 109.46580 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47130 * 299.99497 * 8 6 4 12 12 N 1.46902 * 109.47097 * 119.99398 * 2 1 3 13 13 C 1.46954 * 110.99843 * 171.19814 * 12 2 1 14 14 C 1.53054 * 109.36368 * 183.19095 * 13 12 2 15 15 H 1.09003 * 109.50501 * 181.62283 * 14 13 12 16 16 C 1.52996 * 109.48790 * 61.57006 * 14 13 12 17 17 N 1.46950 * 109.36422 * 301.60360 * 14 13 12 18 18 C 1.46954 * 110.88485 * 59.31890 * 17 14 13 19 19 H 1.09004 * 109.48727 * 60.64649 * 18 17 14 20 20 C 1.52998 * 109.49071 * 180.70840 * 18 17 14 21 21 C 1.46953 * 111.00570 * 295.00355 * 12 2 1 22 22 H 1.08999 * 109.47320 * 66.70617 * 1 2 3 23 23 H 1.09002 * 109.47197 * 186.70578 * 1 2 3 24 24 H 1.09001 * 109.47469 * 306.70601 * 1 2 3 25 25 H 0.97000 * 119.99938 * 359.97031 * 7 6 4 26 26 H 1.08999 * 109.49551 * 303.16277 * 13 12 2 27 27 H 1.09004 * 109.48727 * 63.22588 * 13 12 2 28 28 H 1.09001 * 109.47228 * 300.11044 * 16 14 13 29 29 H 1.09003 * 109.47190 * 60.11206 * 16 14 13 30 30 H 1.08999 * 109.47540 * 180.10486 * 16 14 13 31 31 H 1.00901 * 111.00200 * 295.44978 * 17 14 13 32 32 H 1.09004 * 109.46867 * 179.89078 * 20 18 17 33 33 H 1.08995 * 109.47350 * 299.89157 * 20 18 17 34 34 H 1.08999 * 109.46957 * 59.89544 * 20 18 17 35 35 H 1.08997 * 109.48564 * 296.77897 * 21 12 2 36 36 H 1.08998 * 109.48817 * 56.84160 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2231 -1.7730 -1.2003 6 6 2.2485 -0.0038 -2.3945 7 7 1.8890 1.2587 -2.4737 8 14 3.0588 -0.8378 -3.8565 9 1 2.2330 -1.9944 -4.2869 10 1 3.1768 0.1308 -4.9759 11 1 4.4114 -1.3124 -3.4685 12 7 2.0196 -0.6924 1.1995 13 6 3.4734 -0.8965 1.1332 14 6 3.9312 -1.6888 2.3601 15 1 5.0132 -1.8167 2.3278 16 6 3.2549 -3.0611 2.3629 17 7 3.5600 -0.9568 3.5791 18 6 2.1062 -0.7527 3.6454 19 1 1.6036 -1.7199 3.6620 20 6 1.7575 0.0260 4.9153 21 6 1.6485 0.0395 2.4186 22 1 -0.3634 0.4064 -0.9439 23 1 -0.3634 -1.0206 0.1200 24 1 -0.3634 0.6142 0.8239 25 1 1.4714 1.6927 -1.7133 26 1 3.7220 -1.4513 0.2285 27 1 3.9760 0.0706 1.1166 28 1 2.1729 -2.9330 2.3942 29 1 3.5304 -3.6038 1.4586 30 1 3.5795 -3.6245 3.2377 31 1 4.0516 -0.0775 3.6367 32 1 0.6793 0.1789 4.9632 33 1 2.0836 -0.5385 5.7888 34 1 2.2611 0.9926 4.8986 35 1 2.1303 1.0172 2.4166 36 1 0.5665 0.1670 2.4510 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225178535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:03 Heat of formation + Delta-G solvation = -5.389138 kcal Electronic energy + Delta-G solvation = -15298.404870 eV Core-core repulsion = 13009.858254 eV Total energy + Delta-G solvation = -2288.546616 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.18348 -35.29560 -32.78267 -32.29849 -28.94736 -27.92202 -26.55111 -24.58611 -23.39190 -21.41095 -20.09732 -18.88461 -16.71236 -15.68336 -14.91588 -14.40851 -14.37502 -14.05246 -13.72792 -13.19140 -12.67786 -12.33203 -12.06826 -11.57947 -11.40256 -11.37991 -11.18056 -11.07360 -10.78776 -10.72750 -10.56072 -10.37738 -10.20343 -10.10083 -9.95179 -8.66346 -8.30139 -7.98552 -7.25985 -6.40581 -4.10003 3.41239 3.42087 3.61097 4.45050 4.50290 4.77397 5.30851 5.33692 5.43903 5.54764 5.59748 5.71150 5.81322 5.86653 5.97113 6.09416 6.24151 6.29428 6.34540 6.38712 6.50276 6.59306 6.67848 6.72523 6.76733 6.89142 7.05797 7.36090 7.44623 7.69214 7.86630 8.00999 8.37945 8.56278 8.83885 9.62010 10.97388 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038998 B = 0.009824 C = 0.008570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.819518 B = 2849.497159 C = 3266.436783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.193 3.807 3 H 0.000 1.000 4 C -0.584 4.584 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.911 5.911 8 Si 1.068 2.932 9 H -0.287 1.287 10 H -0.283 1.283 11 H -0.288 1.288 12 N -0.523 5.523 13 C 0.039 3.961 14 C 0.081 3.919 15 H 0.075 0.925 16 C -0.130 4.130 17 N -0.680 5.680 18 C 0.082 3.918 19 H 0.088 0.912 20 C -0.142 4.142 21 C 0.020 3.980 22 H 0.049 0.951 23 H 0.045 0.955 24 H 0.014 0.986 25 H 0.268 0.732 26 H 0.093 0.907 27 H 0.014 0.986 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.045 0.955 31 H 0.331 0.669 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.016 0.984 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.723 -3.631 10.171 10.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.087 3.913 3 H 0.018 0.982 4 C -0.623 4.623 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.547 5.547 8 Si 0.896 3.104 9 H -0.214 1.214 10 H -0.209 1.209 11 H -0.214 1.214 12 N -0.248 5.248 13 C -0.091 4.091 14 C -0.029 4.029 15 H 0.093 0.907 16 C -0.188 4.188 17 N -0.310 5.310 18 C -0.028 4.028 19 H 0.106 0.894 20 C -0.200 4.200 21 C -0.110 4.110 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.033 0.967 25 H 0.080 0.920 26 H 0.112 0.888 27 H 0.032 0.968 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.148 0.852 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.992 -4.409 9.014 10.230 hybrid contribution -0.321 1.423 0.778 1.653 sum 1.671 -2.986 9.792 10.373 Atomic orbital electron populations 1.21859 0.98493 0.99526 0.98587 1.19441 0.91533 0.92515 0.87786 0.98207 1.21811 1.48093 0.96465 0.95923 0.92541 1.25838 0.95806 0.95973 1.01001 1.70812 1.38604 1.11915 1.33396 0.83556 0.76177 0.75118 0.75560 1.21355 1.20870 1.21439 1.62212 1.11800 1.48868 1.01921 1.22586 0.88998 0.98146 0.99339 1.21703 0.98685 0.94686 0.87814 0.90691 1.21662 1.01942 0.94868 1.00303 1.60943 1.06293 1.24914 1.38805 1.21646 0.88792 0.99303 0.93078 0.89396 1.21772 1.00998 0.99753 0.97479 1.22835 1.00940 0.94802 0.92440 0.93210 0.93603 0.96662 0.92047 0.88845 0.96768 0.91434 0.92717 0.93575 0.85189 0.92359 0.92088 0.93205 0.96566 0.91114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.82 37.16 0.33 -2.62 16 2 C 0.19 4.85 1.73 -68.87 -0.12 4.73 16 3 H 0.00 0.01 6.84 -51.92 -0.36 -0.35 16 4 C -0.58 -16.00 6.86 -34.44 -0.24 -16.24 16 5 H 0.06 1.57 7.42 -52.49 -0.39 1.18 16 6 C 0.02 0.51 5.45 -17.82 -0.10 0.42 16 7 N -0.91 -27.23 13.60 55.43 0.75 -26.47 16 8 Si 1.07 24.95 29.91 -169.99 -5.08 19.87 16 9 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.43 7.11 56.52 0.40 -6.02 16 12 N -0.52 -11.22 3.89 -227.89 -0.89 -12.11 16 13 C 0.04 0.80 4.69 -3.77 -0.02 0.78 16 14 C 0.08 1.34 3.69 -67.66 -0.25 1.09 16 15 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 16 C -0.13 -2.07 8.84 37.16 0.33 -1.75 16 17 N -0.68 -10.39 6.35 -99.61 -0.63 -11.02 16 18 C 0.08 1.26 2.82 -67.66 -0.19 1.07 16 19 H 0.09 1.43 6.35 -51.93 -0.33 1.10 16 20 C -0.14 -1.77 9.45 37.16 0.35 -1.42 16 21 C 0.02 0.37 4.68 -3.77 -0.02 0.35 16 22 H 0.05 1.23 8.03 -51.93 -0.42 0.82 16 23 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.01 0.31 6.79 -51.93 -0.35 -0.05 16 25 H 0.27 8.04 6.60 -40.82 -0.27 7.77 16 26 H 0.09 2.10 6.48 -51.93 -0.34 1.76 16 27 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 1.18 5.94 -51.93 -0.31 0.87 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.33 4.86 8.80 -39.29 -0.35 4.52 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 1.30 6.44 -51.93 -0.33 0.97 16 LS Contribution 275.06 15.07 4.15 4.15 Total: -1.00 -28.76 275.06 -7.66 -36.42 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.04 Total: 2.75 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 0.08 Total: -13.59 kcal Atomic # 7 Polarization: -48.84 SS G_CDS: -0.76 Total: -49.60 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.76 -7.66 -36.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225178535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.035 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds