Wall clock time and date at job start Mon Mar 30 2020 02:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.47041 * 2 1 4 4 C 1.50692 * 109.47262 * 239.99800 * 2 1 3 5 5 H 1.08000 * 120.00115 * 269.30338 * 4 2 1 6 6 C 1.37885 * 120.00207 * 89.30379 * 4 2 1 7 7 N 1.31515 * 119.99662 * 353.06381 * 6 4 2 8 8 Si 1.86798 * 119.99963 * 172.79184 * 6 4 2 9 9 H 1.48492 * 109.47448 * 59.99891 * 8 6 4 10 10 H 1.48505 * 109.46580 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47130 * 299.99497 * 8 6 4 12 12 N 1.46902 * 109.47097 * 119.99398 * 2 1 3 13 13 C 1.46954 * 110.99843 * 171.19814 * 12 2 1 14 14 C 1.53054 * 109.36368 * 183.19095 * 13 12 2 15 15 H 1.09003 * 109.50501 * 181.62283 * 14 13 12 16 16 C 1.52996 * 109.48790 * 61.57006 * 14 13 12 17 17 N 1.46950 * 109.36422 * 301.60360 * 14 13 12 18 18 C 1.46954 * 110.88485 * 59.31890 * 17 14 13 19 19 H 1.09004 * 109.48727 * 60.64649 * 18 17 14 20 20 C 1.52998 * 109.49071 * 180.70840 * 18 17 14 21 21 C 1.46953 * 111.00570 * 295.00355 * 12 2 1 22 22 H 1.08999 * 109.47320 * 66.70617 * 1 2 3 23 23 H 1.09002 * 109.47197 * 186.70578 * 1 2 3 24 24 H 1.09001 * 109.47469 * 306.70601 * 1 2 3 25 25 H 0.97000 * 119.99938 * 359.97031 * 7 6 4 26 26 H 1.08999 * 109.49551 * 303.16277 * 13 12 2 27 27 H 1.09004 * 109.48727 * 63.22588 * 13 12 2 28 28 H 1.09001 * 109.47228 * 300.11044 * 16 14 13 29 29 H 1.09003 * 109.47190 * 60.11206 * 16 14 13 30 30 H 1.08999 * 109.47540 * 180.10486 * 16 14 13 31 31 H 1.00901 * 111.00200 * 295.44978 * 17 14 13 32 32 H 1.09004 * 109.46867 * 179.89078 * 20 18 17 33 33 H 1.08995 * 109.47350 * 299.89157 * 20 18 17 34 34 H 1.08999 * 109.46957 * 59.89544 * 20 18 17 35 35 H 1.08997 * 109.48564 * 296.77897 * 21 12 2 36 36 H 1.08998 * 109.48817 * 56.84160 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2231 -1.7730 -1.2003 6 6 2.2485 -0.0038 -2.3945 7 7 1.8890 1.2587 -2.4737 8 14 3.0588 -0.8378 -3.8565 9 1 2.2330 -1.9944 -4.2869 10 1 3.1768 0.1308 -4.9759 11 1 4.4114 -1.3124 -3.4685 12 7 2.0196 -0.6924 1.1995 13 6 3.4734 -0.8965 1.1332 14 6 3.9312 -1.6888 2.3601 15 1 5.0132 -1.8167 2.3278 16 6 3.2549 -3.0611 2.3629 17 7 3.5600 -0.9568 3.5791 18 6 2.1062 -0.7527 3.6454 19 1 1.6036 -1.7199 3.6620 20 6 1.7575 0.0260 4.9153 21 6 1.6485 0.0395 2.4186 22 1 -0.3634 0.4064 -0.9439 23 1 -0.3634 -1.0206 0.1200 24 1 -0.3634 0.6142 0.8239 25 1 1.4714 1.6927 -1.7133 26 1 3.7220 -1.4513 0.2285 27 1 3.9760 0.0706 1.1166 28 1 2.1729 -2.9330 2.3942 29 1 3.5304 -3.6038 1.4586 30 1 3.5795 -3.6245 3.2377 31 1 4.0516 -0.0775 3.6367 32 1 0.6793 0.1789 4.9632 33 1 2.0836 -0.5385 5.7888 34 1 2.2611 0.9926 4.8986 35 1 2.1303 1.0172 2.4166 36 1 0.5665 0.1670 2.4510 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225178535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:03 Heat of formation + Delta-G solvation = -25.554095 kcal Electronic energy + Delta-G solvation = -15299.279288 eV Core-core repulsion = 13009.858254 eV Total energy + Delta-G solvation = -2289.421034 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.69652 -37.08530 -34.26264 -34.09866 -30.81845 -29.16072 -28.10558 -26.51268 -25.09826 -22.77571 -22.00793 -20.28304 -18.76476 -17.34868 -16.29874 -16.07464 -15.84280 -15.60014 -15.56876 -14.91839 -14.22964 -13.78062 -13.43857 -13.19575 -13.17532 -12.90413 -12.75334 -12.63297 -12.49007 -12.29962 -12.19554 -11.98562 -11.86447 -11.83014 -11.41788 -10.74420 -10.40416 -9.42774 -9.03044 -8.64917 -6.34864 1.50607 1.57798 1.77001 2.53212 3.01685 3.20247 3.29878 3.97267 4.09659 4.12690 4.21620 4.31086 4.44918 4.49811 4.64367 4.68152 4.71570 4.77325 4.85157 4.91058 4.98417 5.05190 5.12188 5.17009 5.27854 5.30447 5.44890 5.47119 5.89772 5.96701 6.06264 6.40406 6.43903 6.46777 6.70428 7.45005 8.72647 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.038998 B = 0.009824 C = 0.008570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.819518 B = 2849.497159 C = 3266.436783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.193 3.807 3 H -0.037 1.037 4 C -0.586 4.586 5 H 0.050 0.950 6 C -0.032 4.032 7 N -0.938 5.938 8 Si 1.112 2.888 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.524 5.524 13 C 0.042 3.958 14 C 0.089 3.911 15 H 0.094 0.906 16 C -0.124 4.124 17 N -0.669 5.669 18 C 0.089 3.911 19 H 0.086 0.914 20 C -0.134 4.134 21 C 0.020 3.980 22 H 0.027 0.973 23 H 0.050 0.950 24 H 0.037 0.963 25 H 0.255 0.745 26 H 0.068 0.932 27 H -0.006 1.006 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.337 0.663 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.004 0.996 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.157 -4.890 11.631 12.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.086 3.914 3 H -0.020 1.020 4 C -0.624 4.624 5 H 0.068 0.932 6 C -0.230 4.230 7 N -0.575 5.575 8 Si 0.934 3.066 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.196 1.196 12 N -0.248 5.248 13 C -0.088 4.088 14 C -0.021 4.021 15 H 0.112 0.888 16 C -0.181 4.181 17 N -0.298 5.298 18 C -0.021 4.021 19 H 0.104 0.896 20 C -0.192 4.192 21 C -0.110 4.110 22 H 0.046 0.954 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.065 0.935 26 H 0.086 0.914 27 H 0.012 0.988 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.154 0.846 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.023 0.977 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.423 -5.680 10.514 12.193 hybrid contribution -0.466 1.824 0.389 1.923 sum 1.957 -3.856 10.903 11.729 Atomic orbital electron populations 1.21668 0.97173 1.00023 0.98338 1.19329 0.92550 0.90527 0.88982 1.01951 1.22037 1.47362 0.96165 0.96883 0.93203 1.27225 0.95888 0.95864 1.04029 1.70934 1.40505 1.13047 1.33054 0.82985 0.76377 0.74670 0.72532 1.19525 1.21209 1.19625 1.62174 1.12443 1.48464 1.01719 1.22612 0.88256 0.97379 1.00569 1.21678 0.99781 0.94468 0.86186 0.88793 1.21597 1.00770 0.94525 1.01230 1.60983 1.06286 1.25182 1.37384 1.21661 0.88627 0.99047 0.92807 0.89601 1.21719 1.01853 0.99562 0.96078 1.22971 1.01014 0.94563 0.92410 0.95401 0.93123 0.94367 0.93508 0.91403 0.98820 0.92992 0.92975 0.91372 0.84562 0.91267 0.90578 0.92890 0.97742 0.90949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.36 8.82 71.98 0.63 -4.72 16 2 C 0.19 9.93 1.73 44.17 0.08 10.00 16 3 H -0.04 -2.16 6.84 -2.38 -0.02 -2.18 16 4 C -0.59 -32.69 6.86 25.60 0.18 -32.52 16 5 H 0.05 2.80 7.42 -2.91 -0.02 2.78 16 6 C -0.03 -1.82 5.45 84.66 0.46 -1.36 16 7 N -0.94 -57.58 13.60 21.45 0.29 -57.29 16 8 Si 1.11 50.34 29.91 68.60 2.05 52.39 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 12 N -0.52 -22.50 3.89 -874.90 -3.40 -25.90 16 13 C 0.04 1.71 4.69 86.31 0.41 2.12 16 14 C 0.09 2.78 3.69 44.92 0.17 2.95 16 15 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 16 C -0.12 -3.67 8.84 71.98 0.64 -3.03 16 17 N -0.67 -18.77 6.35 -469.07 -2.98 -21.75 16 18 C 0.09 2.53 2.82 44.92 0.13 2.66 16 19 H 0.09 2.55 6.35 -2.38 -0.02 2.54 16 20 C -0.13 -2.93 9.45 71.98 0.68 -2.25 16 21 C 0.02 0.73 4.68 86.31 0.40 1.14 16 22 H 0.03 1.39 8.03 -2.39 -0.02 1.37 16 23 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.04 1.58 6.79 -2.39 -0.02 1.56 16 25 H 0.25 15.92 6.60 -92.71 -0.61 15.31 16 26 H 0.07 3.10 6.48 -2.39 -0.02 3.08 16 27 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 28 H 0.05 1.70 5.94 -2.39 -0.01 1.69 16 29 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.34 9.10 8.80 -89.69 -0.79 8.32 16 32 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 36 H 0.07 2.57 6.44 -2.39 -0.02 2.55 16 Total: -1.00 -62.54 275.06 0.14 -62.40 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.41 Total: 15.16 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 3.77 Total: -25.02 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -6.09 Total: -104.94 kcal Atomic # 14 Polarization: 50.34 SS G_CDS: 2.05 Total: 52.39 kcal Total: -62.54 0.14 -62.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225178535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.847 kcal (2) G-P(sol) polarization free energy of solvation -62.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds