Wall clock time and date at job start Mon Mar 30 2020 02:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46752 * 2 1 4 4 C 1.50696 * 109.46972 * 240.00904 * 2 1 3 5 5 H 1.08004 * 119.99163 * 245.16564 * 4 2 1 6 6 C 1.37870 * 120.00639 * 65.16404 * 4 2 1 7 7 N 1.31512 * 120.00202 * 8.68920 * 6 4 2 8 8 Si 1.86805 * 120.00108 * 188.68476 * 6 4 2 9 9 H 1.48503 * 109.46848 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47250 * 300.00374 * 8 6 4 11 11 H 1.48507 * 109.46973 * 60.00336 * 8 6 4 12 12 N 1.46898 * 109.46918 * 120.00034 * 2 1 3 13 13 C 1.46960 * 110.99639 * 62.53700 * 12 2 1 14 14 C 1.53054 * 109.36232 * 183.18283 * 13 12 2 15 15 H 1.09005 * 109.50235 * 61.57355 * 14 13 12 16 16 C 1.53002 * 109.48664 * 181.62751 * 14 13 12 17 17 N 1.46949 * 109.36542 * 301.59874 * 14 13 12 18 18 C 1.46960 * 110.88100 * 59.32227 * 17 14 13 19 19 C 1.46960 * 110.99859 * 186.32950 * 12 2 1 20 20 H 1.08994 * 109.49186 * 296.78529 * 19 12 2 21 21 C 1.52999 * 109.48632 * 56.84851 * 19 12 2 22 22 H 1.08998 * 109.47190 * 173.27085 * 1 2 3 23 23 H 1.09000 * 109.47424 * 293.27862 * 1 2 3 24 24 H 1.09003 * 109.47012 * 53.27604 * 1 2 3 25 25 H 0.97004 * 119.99524 * 359.07330 * 7 6 4 26 26 H 1.09004 * 109.48796 * 303.14862 * 13 12 2 27 27 H 1.09000 * 109.49168 * 63.22076 * 13 12 2 28 28 H 1.09001 * 109.46688 * 179.89368 * 16 14 13 29 29 H 1.08996 * 109.47051 * 299.89417 * 16 14 13 30 30 H 1.09000 * 109.46655 * 59.89747 * 16 14 13 31 31 H 1.00902 * 111.00027 * 295.45470 * 17 14 13 32 32 H 1.09004 * 109.48796 * 180.71378 * 18 17 14 33 33 H 1.08993 * 109.50549 * 60.65481 * 18 17 14 34 34 H 1.08999 * 109.47217 * 52.99751 * 21 19 12 35 35 H 1.08993 * 109.47014 * 172.99888 * 21 19 12 36 36 H 1.08997 * 109.47414 * 293.00451 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2305 5 1 2.5827 -1.6344 -1.1336 6 6 1.7893 -0.1803 -2.4799 7 7 1.2727 1.0237 -2.5945 8 14 2.1940 -1.1724 -4.0102 9 1 1.8417 -0.3842 -5.2185 10 1 3.6459 -1.4837 -4.0287 11 1 1.4165 -2.4376 -3.9998 12 7 2.0196 -0.6925 1.1994 13 6 1.5986 -2.1005 1.2033 14 6 2.0594 -2.7643 2.5031 15 1 1.5910 -2.2662 3.3521 16 6 1.6579 -4.2407 2.4924 17 7 3.5205 -2.6543 2.6151 18 6 3.9415 -1.2463 2.6113 19 6 3.4808 -0.5825 1.3114 20 1 3.9492 -1.0808 0.4627 21 6 3.8822 0.8939 1.3221 22 1 -0.3633 -1.0206 -0.1204 23 1 -0.3634 0.4061 0.9440 24 1 -0.3633 0.6145 -0.8237 25 1 1.0502 1.5335 -1.7998 26 1 0.5123 -2.1554 1.1322 27 1 2.0456 -2.6161 0.3534 28 1 1.9879 -4.7136 3.4174 29 1 0.5742 -4.3219 2.4093 30 1 2.1259 -4.7382 1.6429 31 1 3.9794 -3.1710 1.8800 32 1 5.0278 -1.1914 2.6824 33 1 3.4948 -0.7305 3.4612 34 1 3.3190 1.4179 2.0943 35 1 4.9489 0.9789 1.5295 36 1 3.6645 1.3366 0.3502 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226123535.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:37 Heat of formation + Delta-G solvation = -5.001631 kcal Electronic energy + Delta-G solvation = -15442.507852 eV Core-core repulsion = 13153.978040 eV Total energy + Delta-G solvation = -2288.529813 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.10345 -35.29733 -33.13934 -31.92735 -29.27503 -28.15404 -25.06655 -24.48233 -24.12798 -20.84478 -20.42027 -19.36116 -16.67858 -15.33080 -14.85728 -14.70532 -14.36108 -13.78769 -13.56925 -13.01838 -12.88028 -12.31229 -11.89184 -11.67247 -11.36359 -11.25841 -11.07936 -11.03458 -10.72252 -10.71680 -10.62025 -10.27358 -10.20330 -10.11060 -9.69476 -9.03493 -8.36502 -7.94541 -7.09150 -6.37972 -4.12584 3.37462 3.39059 3.57413 4.47653 4.57175 4.79702 5.29991 5.41230 5.53342 5.58299 5.68324 5.80208 5.84737 6.01572 6.11038 6.15442 6.28630 6.33593 6.34615 6.40098 6.61475 6.70137 6.73946 6.77995 6.85556 6.91657 7.31176 7.34256 7.38100 7.70021 7.88547 8.13982 8.24600 8.50582 8.79010 9.59581 10.96386 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.030265 B = 0.011072 C = 0.010189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.924900 B = 2528.375929 C = 2747.434358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.190 3.810 3 H 0.038 0.962 4 C -0.622 4.622 5 H 0.047 0.953 6 C 0.028 3.972 7 N -0.907 5.907 8 Si 1.060 2.940 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.289 1.289 12 N -0.525 5.525 13 C 0.032 3.968 14 C 0.081 3.919 15 H 0.079 0.921 16 C -0.141 4.141 17 N -0.685 5.685 18 C 0.064 3.936 19 C 0.053 3.947 20 H 0.043 0.957 21 C -0.136 4.136 22 H 0.037 0.963 23 H 0.024 0.976 24 H 0.054 0.946 25 H 0.271 0.729 26 H 0.070 0.930 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.333 0.667 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.046 0.954 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.643 -5.438 7.891 9.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.083 3.917 3 H 0.055 0.945 4 C -0.661 4.661 5 H 0.065 0.935 6 C -0.178 4.178 7 N -0.543 5.543 8 Si 0.889 3.111 9 H -0.207 1.207 10 H -0.217 1.217 11 H -0.215 1.215 12 N -0.249 5.249 13 C -0.098 4.098 14 C -0.030 4.030 15 H 0.098 0.902 16 C -0.199 4.199 17 N -0.313 5.313 18 C -0.066 4.066 19 C -0.058 4.058 20 H 0.061 0.939 21 C -0.194 4.194 22 H 0.056 0.944 23 H 0.043 0.957 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.150 0.850 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.403 -5.204 7.349 9.320 hybrid contribution 0.198 -0.226 -0.193 0.357 sum 2.601 -5.430 7.155 9.351 Atomic orbital electron populations 1.21868 0.98625 1.00044 0.98659 1.19428 0.91404 0.94748 0.86078 0.94473 1.22394 1.39679 1.10837 0.93172 0.93483 1.25643 0.94492 0.96546 1.01125 1.70812 1.40349 1.09524 1.33574 0.83672 0.76115 0.75290 0.76061 1.20723 1.21674 1.21542 1.62604 1.09240 1.11896 1.41194 1.22656 1.00893 0.90283 0.96011 1.21680 0.88034 0.95372 0.97873 0.90237 1.21752 1.00983 0.95511 1.01674 1.60948 1.06696 1.11773 1.51861 1.22141 0.99109 0.87940 0.97389 1.22090 0.90268 0.96702 0.96711 0.93898 1.21711 0.99218 0.95944 1.02518 0.94414 0.95660 0.92753 0.91718 0.91204 0.94302 0.92292 0.92297 0.93017 0.85038 0.91370 0.90921 0.92852 0.93543 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.50 37.16 0.32 -2.84 16 2 C 0.19 4.66 1.67 -68.87 -0.12 4.54 16 3 H 0.04 0.99 5.42 -51.93 -0.28 0.71 16 4 C -0.62 -16.72 7.06 -34.44 -0.24 -16.96 16 5 H 0.05 1.30 5.83 -52.48 -0.31 0.99 16 6 C 0.03 0.77 5.25 -17.82 -0.09 0.67 16 7 N -0.91 -26.55 13.10 55.43 0.73 -25.82 16 8 Si 1.06 24.95 29.91 -169.99 -5.08 19.87 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.52 -11.11 4.50 -219.94 -0.99 -12.10 16 13 C 0.03 0.62 4.23 -3.76 -0.02 0.60 16 14 C 0.08 1.30 3.20 -67.66 -0.22 1.08 16 15 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 16 C -0.14 -1.90 9.45 37.16 0.35 -1.55 16 17 N -0.68 -10.78 6.56 -106.59 -0.70 -11.47 16 18 C 0.06 1.04 6.00 -3.77 -0.02 1.02 16 19 C 0.05 1.02 2.28 -67.66 -0.15 0.87 16 20 H 0.04 0.95 7.08 -51.93 -0.37 0.58 16 21 C -0.14 -2.51 8.64 37.16 0.32 -2.19 16 22 H 0.04 0.87 6.74 -51.93 -0.35 0.52 16 23 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 1.36 6.45 -51.93 -0.33 1.03 16 25 H 0.27 7.91 5.93 -40.82 -0.24 7.66 16 26 H 0.07 1.40 6.36 -51.93 -0.33 1.07 16 27 H 0.04 0.85 6.35 -51.93 -0.33 0.52 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.33 5.14 8.80 -39.29 -0.35 4.80 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 1.36 6.63 -51.93 -0.34 1.02 16 LS Contribution 270.55 15.07 4.08 4.08 Total: -1.00 -28.21 270.55 -7.68 -35.88 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.83 Total: 4.32 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 0.13 Total: -14.75 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -0.96 Total: -49.40 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -28.21 -7.68 -35.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226123535.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.881 kcal (2) G-P(sol) polarization free energy of solvation -28.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds