Wall clock time and date at job start Mon Mar 30 2020 03:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00044 * 2 1 4 4 H 1.09002 * 109.50206 * 34.92397 * 3 2 1 5 5 C 1.53118 * 109.50210 * 274.80247 * 3 2 1 6 6 C 1.53123 * 109.15585 * 182.40422 * 5 3 2 7 7 C 1.53030 * 109.28009 * 57.65675 * 6 5 3 8 8 N 1.46846 * 109.52377 * 300.82027 * 7 6 5 9 9 C 1.46909 * 111.00162 * 185.84294 * 8 7 6 10 10 H 1.09001 * 109.47064 * 175.79105 * 9 8 7 11 11 C 1.52999 * 109.46474 * 295.78727 * 9 8 7 12 12 C 1.50701 * 109.47041 * 55.78723 * 9 8 7 13 13 H 1.07996 * 119.99983 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99573 * 180.02562 * 12 9 8 15 15 N 1.31509 * 119.99786 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 120.00007 * 359.97438 * 14 12 9 17 17 H 1.48505 * 109.46845 * 90.00538 * 16 14 12 18 18 H 1.48496 * 109.47031 * 209.99852 * 16 14 12 19 19 H 1.48493 * 109.47412 * 330.00499 * 16 14 12 20 20 C 1.46846 * 111.19997 * 61.74000 * 8 7 6 21 21 H 1.08998 * 109.47072 * 299.99947 * 1 2 3 22 22 H 1.08999 * 109.46787 * 60.00405 * 1 2 3 23 23 H 1.09008 * 109.47120 * 179.97438 * 1 2 3 24 24 H 1.00904 * 111.00241 * 236.04182 * 2 1 3 25 25 H 1.08993 * 109.52399 * 302.30805 * 5 3 2 26 26 H 1.08996 * 109.51997 * 62.50013 * 5 3 2 27 27 H 1.09003 * 109.49962 * 177.59579 * 6 5 3 28 28 H 1.08997 * 109.50390 * 297.67422 * 6 5 3 29 29 H 1.08999 * 109.46586 * 180.80053 * 7 6 5 30 30 H 1.08998 * 109.46592 * 60.83401 * 7 6 5 31 31 H 1.09006 * 109.46653 * 180.02562 * 11 9 8 32 32 H 1.09005 * 109.47487 * 299.99735 * 11 9 8 33 33 H 1.08998 * 109.47407 * 59.99980 * 11 9 8 34 34 H 0.97000 * 119.99940 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.45759 * 58.27846 * 20 8 7 36 36 H 1.09004 * 109.46280 * 178.24201 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3394 2.0131 0.5882 5 6 2.0658 1.8920 -1.4383 6 6 2.6713 3.2984 -1.4346 7 6 4.0553 3.2510 -0.7833 8 7 3.9342 2.7472 0.5907 9 6 5.2225 2.8183 1.2930 10 1 5.0887 2.5096 2.3298 11 6 6.2275 1.8886 0.6099 12 6 5.7392 4.2334 1.2527 13 1 5.1680 5.0028 0.7548 14 6 6.9418 4.5454 1.8506 15 7 7.3930 5.7801 1.8151 16 14 7.9302 3.2142 2.7112 17 1 8.8603 2.5829 1.7407 18 1 8.7088 3.8164 3.8230 19 1 7.0074 2.1850 3.2536 20 6 3.3991 1.3798 0.6097 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8306 -0.5262 -0.7813 25 1 2.6905 1.2281 -2.0358 26 1 1.0622 1.9285 -1.8619 27 1 2.7635 3.6575 -2.4596 28 1 2.0257 3.9710 -0.8700 29 1 4.4832 4.2533 -0.7663 30 1 4.7041 2.5891 -1.3569 31 1 7.1834 1.9410 1.1313 32 1 5.8538 0.8651 0.6390 33 1 6.3614 2.1972 -0.4269 34 1 8.2388 5.9997 2.2360 35 1 4.0510 0.7267 0.0296 36 1 3.3504 1.0232 1.6385 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226718597.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:08 Heat of formation + Delta-G solvation = 8.247953 kcal Electronic energy + Delta-G solvation = -15049.882707 eV Core-core repulsion = 12761.927440 eV Total energy + Delta-G solvation = -2287.955268 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.99062 -35.98599 -33.34931 -31.87030 -29.63037 -28.69355 -25.28218 -24.77615 -23.43529 -21.86336 -20.33334 -18.89804 -16.49891 -16.01080 -15.00897 -14.65001 -14.46074 -13.95818 -13.86879 -13.52559 -13.07058 -12.59718 -12.39365 -12.20064 -12.07716 -11.67918 -11.51203 -11.22454 -10.78121 -10.69483 -10.45839 -10.15147 -10.09689 -9.69726 -9.46811 -8.93425 -8.56743 -8.32010 -7.26591 -6.05043 -4.03255 3.27934 3.39213 3.41071 4.19732 4.41850 4.90441 5.10237 5.19141 5.28203 5.33436 5.40810 5.43303 5.71416 5.82339 5.89301 5.93092 6.08817 6.18243 6.20319 6.24564 6.33115 6.35196 6.47315 6.58110 6.71137 6.79213 6.95365 7.10433 7.29966 7.42190 7.65543 8.00870 8.17300 8.68916 9.01059 9.57356 11.07749 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048596 B = 0.008514 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.040577 B = 3287.826227 C = 3610.927085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.692 5.692 3 C 0.090 3.910 4 H 0.083 0.917 5 C -0.145 4.145 6 C -0.114 4.114 7 C 0.059 3.941 8 N -0.521 5.521 9 C 0.183 3.817 10 H 0.041 0.959 11 C -0.186 4.186 12 C -0.505 4.505 13 H 0.083 0.917 14 C 0.070 3.930 15 N -0.900 5.900 16 Si 0.887 3.113 17 H -0.281 1.281 18 H -0.297 1.297 19 H -0.267 1.267 20 C 0.065 3.935 21 H 0.064 0.936 22 H 0.019 0.981 23 H 0.062 0.938 24 H 0.337 0.663 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.022 0.978 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.052 0.948 34 H 0.263 0.737 35 H 0.026 0.974 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.921 -9.775 -5.576 15.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.321 5.321 3 C -0.020 4.020 4 H 0.102 0.898 5 C -0.184 4.184 6 C -0.152 4.152 7 C -0.069 4.069 8 N -0.245 5.245 9 C 0.075 3.925 10 H 0.059 0.941 11 C -0.244 4.244 12 C -0.543 4.543 13 H 0.101 0.899 14 C -0.132 4.132 15 N -0.539 5.539 16 Si 0.717 3.283 17 H -0.209 1.209 18 H -0.225 1.225 19 H -0.192 1.192 20 C -0.064 4.064 21 H 0.083 0.917 22 H 0.038 0.962 23 H 0.081 0.919 24 H 0.155 0.845 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.111 0.889 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.076 -9.426 -4.566 14.533 hybrid contribution 1.107 -0.968 -0.951 1.751 sum -8.969 -10.394 -5.516 14.795 Atomic orbital electron populations 1.22177 0.88167 1.01274 1.00336 1.60429 1.07410 1.14587 1.49686 1.21654 0.97339 0.88032 0.95020 0.89837 1.22267 0.99993 0.98430 0.97745 1.21571 0.98001 0.95770 0.99895 1.22037 0.94307 1.01980 0.88583 1.62008 1.28468 1.18896 1.15143 1.19745 0.83461 0.96035 0.93279 0.94135 1.22811 1.01033 0.98680 1.01898 1.20996 1.04940 0.92460 1.35874 0.89890 1.24917 0.97340 0.95214 0.95718 1.69879 1.20984 1.18053 1.44967 0.86878 0.80364 0.82052 0.78970 1.20872 1.22465 1.19237 1.21944 0.93174 0.90862 1.00392 0.91705 0.96238 0.91897 0.84542 0.92550 0.92910 0.92353 0.91395 0.88883 0.95976 0.93814 0.95026 0.92862 0.92665 0.95585 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.50 60.06 0.63 0.95 16 2 N -0.69 -8.81 6.61 -113.92 -0.75 -9.56 16 3 C 0.09 1.32 2.63 -67.63 -0.18 1.14 16 4 H 0.08 1.32 7.80 -51.93 -0.41 0.91 16 5 C -0.15 -1.98 5.26 -26.61 -0.14 -2.12 16 6 C -0.11 -1.76 6.09 -26.65 -0.16 -1.92 16 7 C 0.06 1.14 4.75 -3.84 -0.02 1.12 16 8 N -0.52 -10.86 4.67 -228.08 -1.07 -11.93 16 9 C 0.18 4.37 2.00 -68.86 -0.14 4.23 16 10 H 0.04 1.02 7.20 -51.93 -0.37 0.65 16 11 C -0.19 -4.12 7.98 37.16 0.30 -3.82 16 12 C -0.50 -14.06 8.44 -34.44 -0.29 -14.35 16 13 H 0.08 2.50 6.64 -52.49 -0.35 2.15 16 14 C 0.07 2.00 5.45 -17.82 -0.10 1.91 16 15 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 16 Si 0.89 22.13 24.37 -169.99 -4.14 17.99 16 17 H -0.28 -6.88 6.87 56.52 0.39 -6.49 16 18 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 19 H -0.27 -6.44 6.53 56.52 0.37 -6.07 16 20 C 0.07 1.16 4.50 -3.84 -0.02 1.14 16 21 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 22 H 0.02 0.19 7.50 -51.93 -0.39 -0.20 16 23 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 24 H 0.34 3.88 8.53 -39.29 -0.34 3.54 16 25 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 26 H 0.05 0.64 7.54 -51.93 -0.39 0.25 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.09 2.04 6.02 -51.93 -0.31 1.73 16 30 H 0.02 0.43 6.71 -51.93 -0.35 0.08 16 31 H 0.04 1.01 3.27 -51.93 -0.17 0.84 16 32 H 0.03 0.62 6.54 -51.93 -0.34 0.28 16 33 H 0.05 1.16 6.63 -51.93 -0.34 0.82 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.03 0.46 6.63 -51.93 -0.34 0.12 16 36 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 LS Contribution 265.73 15.07 4.00 4.00 Total: -1.00 -29.27 265.73 -7.11 -36.38 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.81 Total: 1.50 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -0.11 Total: -11.73 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -1.04 Total: -48.14 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.14 Total: 17.99 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.27 -7.11 -36.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226718597.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.629 kcal (2) G-P(sol) polarization free energy of solvation -29.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds