Wall clock time and date at job start Mon Mar 30 2020 03:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00044 * 2 1 4 4 H 1.09002 * 109.50206 * 34.92397 * 3 2 1 5 5 C 1.53118 * 109.50210 * 274.80247 * 3 2 1 6 6 C 1.53123 * 109.15585 * 182.40422 * 5 3 2 7 7 C 1.53030 * 109.28009 * 57.65675 * 6 5 3 8 8 N 1.46846 * 109.52377 * 300.82027 * 7 6 5 9 9 C 1.46909 * 111.00162 * 185.84294 * 8 7 6 10 10 H 1.09001 * 109.47064 * 175.79105 * 9 8 7 11 11 C 1.52999 * 109.46474 * 295.78727 * 9 8 7 12 12 C 1.50701 * 109.47041 * 55.78723 * 9 8 7 13 13 H 1.07996 * 119.99983 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99573 * 180.02562 * 12 9 8 15 15 N 1.31509 * 119.99786 * 179.97438 * 14 12 9 16 16 Si 1.86803 * 120.00007 * 359.97438 * 14 12 9 17 17 H 1.48505 * 109.46845 * 90.00538 * 16 14 12 18 18 H 1.48496 * 109.47031 * 209.99852 * 16 14 12 19 19 H 1.48493 * 109.47412 * 330.00499 * 16 14 12 20 20 C 1.46846 * 111.19997 * 61.74000 * 8 7 6 21 21 H 1.08998 * 109.47072 * 299.99947 * 1 2 3 22 22 H 1.08999 * 109.46787 * 60.00405 * 1 2 3 23 23 H 1.09008 * 109.47120 * 179.97438 * 1 2 3 24 24 H 1.00904 * 111.00241 * 236.04182 * 2 1 3 25 25 H 1.08993 * 109.52399 * 302.30805 * 5 3 2 26 26 H 1.08996 * 109.51997 * 62.50013 * 5 3 2 27 27 H 1.09003 * 109.49962 * 177.59579 * 6 5 3 28 28 H 1.08997 * 109.50390 * 297.67422 * 6 5 3 29 29 H 1.08999 * 109.46586 * 180.80053 * 7 6 5 30 30 H 1.08998 * 109.46592 * 60.83401 * 7 6 5 31 31 H 1.09006 * 109.46653 * 180.02562 * 11 9 8 32 32 H 1.09005 * 109.47487 * 299.99735 * 11 9 8 33 33 H 1.08998 * 109.47407 * 59.99980 * 11 9 8 34 34 H 0.97000 * 119.99940 * 179.97438 * 15 14 12 35 35 H 1.08998 * 109.45759 * 58.27846 * 20 8 7 36 36 H 1.09004 * 109.46280 * 178.24201 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3394 2.0131 0.5882 5 6 2.0658 1.8920 -1.4383 6 6 2.6713 3.2984 -1.4346 7 6 4.0553 3.2510 -0.7833 8 7 3.9342 2.7472 0.5907 9 6 5.2225 2.8183 1.2930 10 1 5.0887 2.5096 2.3298 11 6 6.2275 1.8886 0.6099 12 6 5.7392 4.2334 1.2527 13 1 5.1680 5.0028 0.7548 14 6 6.9418 4.5454 1.8506 15 7 7.3930 5.7801 1.8151 16 14 7.9302 3.2142 2.7112 17 1 8.8603 2.5829 1.7407 18 1 8.7088 3.8164 3.8230 19 1 7.0074 2.1850 3.2536 20 6 3.3991 1.3798 0.6097 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8306 -0.5262 -0.7813 25 1 2.6905 1.2281 -2.0358 26 1 1.0622 1.9285 -1.8619 27 1 2.7635 3.6575 -2.4596 28 1 2.0257 3.9710 -0.8700 29 1 4.4832 4.2533 -0.7663 30 1 4.7041 2.5891 -1.3569 31 1 7.1834 1.9410 1.1313 32 1 5.8538 0.8651 0.6390 33 1 6.3614 2.1972 -0.4269 34 1 8.2388 5.9997 2.2360 35 1 4.0510 0.7267 0.0296 36 1 3.3504 1.0232 1.6385 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226718597.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:08 Heat of formation + Delta-G solvation = -14.548454 kcal Electronic energy + Delta-G solvation = -15050.871234 eV Core-core repulsion = 12761.927440 eV Total energy + Delta-G solvation = -2288.943794 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.42074 -37.36798 -34.97482 -33.69135 -31.13080 -30.15110 -27.25313 -25.88952 -24.93200 -23.18774 -21.87857 -20.45364 -18.56954 -17.47650 -16.45979 -16.21691 -15.82637 -15.39061 -15.11829 -15.05080 -14.77367 -14.17501 -13.83812 -13.61140 -13.38333 -13.31247 -12.99045 -12.68272 -12.41487 -12.18472 -12.09028 -11.68718 -11.59493 -11.37577 -11.19957 -10.93458 -10.74798 -9.31100 -8.90201 -8.27515 -6.30049 1.29076 1.35700 1.45497 2.32102 2.99132 3.07828 3.60483 3.89877 3.97594 4.14001 4.31519 4.44177 4.46172 4.54326 4.58196 4.65159 4.67226 4.75981 4.78431 4.89267 4.96590 5.03441 5.07748 5.11599 5.15394 5.31703 5.36669 5.49172 5.63874 6.03164 6.10660 6.46430 6.52491 6.73993 6.77952 7.34784 8.88785 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.048596 B = 0.008514 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.040577 B = 3287.826227 C = 3610.927085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.698 5.698 3 C 0.099 3.901 4 H 0.071 0.929 5 C -0.135 4.135 6 C -0.108 4.108 7 C 0.062 3.938 8 N -0.536 5.536 9 C 0.184 3.816 10 H 0.031 0.969 11 C -0.178 4.178 12 C -0.505 4.505 13 H 0.044 0.956 14 C 0.013 3.987 15 N -0.948 5.948 16 Si 0.948 3.052 17 H -0.269 1.269 18 H -0.298 1.298 19 H -0.251 1.251 20 C 0.067 3.933 21 H 0.058 0.942 22 H 0.029 0.971 23 H 0.081 0.919 24 H 0.347 0.653 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.024 0.976 31 H 0.036 0.964 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.265 0.735 35 H 0.031 0.969 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.915 -12.389 -6.259 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.328 5.328 3 C -0.012 4.012 4 H 0.090 0.910 5 C -0.174 4.174 6 C -0.146 4.146 7 C -0.066 4.066 8 N -0.260 5.260 9 C 0.076 3.924 10 H 0.048 0.952 11 C -0.237 4.237 12 C -0.543 4.543 13 H 0.062 0.938 14 C -0.184 4.184 15 N -0.589 5.589 16 Si 0.775 3.225 17 H -0.195 1.195 18 H -0.225 1.225 19 H -0.175 1.175 20 C -0.061 4.061 21 H 0.077 0.923 22 H 0.048 0.952 23 H 0.099 0.901 24 H 0.165 0.835 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.049 0.951 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.099 -12.065 -5.266 17.218 hybrid contribution 1.327 -0.102 -0.770 1.538 sum -9.772 -12.167 -6.036 16.732 Atomic orbital electron populations 1.22228 0.86564 1.02577 1.00508 1.60340 1.08895 1.13132 1.50453 1.21432 0.95118 0.89317 0.95317 0.91022 1.22193 1.01308 0.96781 0.97162 1.21513 0.95356 0.97390 1.00347 1.21963 0.96764 0.99652 0.88188 1.61915 1.26835 1.21338 1.15896 1.19544 0.85515 0.93804 0.93572 0.95150 1.22665 0.99948 0.99737 1.01310 1.21233 1.04499 0.93940 1.34618 0.93770 1.25736 0.98641 0.97355 0.96671 1.70025 1.21781 1.20365 1.46682 0.85872 0.79101 0.79529 0.77961 1.19540 1.22530 1.17527 1.21980 0.95054 0.88767 1.00328 0.92333 0.95244 0.90063 0.83452 0.91569 0.90529 0.90368 0.92196 0.92765 0.95783 0.94593 0.92183 0.93035 0.92572 0.95083 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.50 127.69 1.34 1.88 16 2 N -0.70 -15.52 6.61 -514.33 -3.40 -18.92 16 3 C 0.10 2.67 2.63 44.97 0.12 2.79 16 4 H 0.07 2.13 7.80 -2.39 -0.02 2.11 16 5 C -0.14 -3.25 5.26 30.67 0.16 -3.09 16 6 C -0.11 -3.16 6.09 30.65 0.19 -2.97 16 7 C 0.06 2.40 4.75 86.32 0.41 2.81 16 8 N -0.54 -22.18 4.67 -875.51 -4.09 -26.27 16 9 C 0.18 8.78 2.00 44.17 0.09 8.87 16 10 H 0.03 1.52 7.20 -2.39 -0.02 1.50 16 11 C -0.18 -7.60 7.98 71.98 0.57 -7.02 16 12 C -0.50 -28.99 8.44 25.60 0.22 -28.77 16 13 H 0.04 2.82 6.64 -2.91 -0.02 2.80 16 14 C 0.01 0.77 5.45 84.66 0.46 1.23 16 15 N -0.95 -59.60 13.96 21.45 0.30 -59.30 16 16 Si 0.95 45.59 24.37 68.60 1.67 47.26 16 17 H -0.27 -12.34 6.87 99.48 0.68 -11.66 16 18 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 19 H -0.25 -11.33 6.53 99.48 0.65 -10.68 16 20 C 0.07 2.27 4.50 86.33 0.39 2.66 16 21 H 0.06 1.11 8.06 -2.39 -0.02 1.09 16 22 H 0.03 0.47 7.50 -2.39 -0.02 0.45 16 23 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.35 6.65 8.53 -89.69 -0.77 5.89 16 25 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 26 H 0.08 1.54 7.54 -2.39 -0.02 1.52 16 27 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.05 2.49 6.02 -2.39 -0.01 2.47 16 30 H 0.02 0.91 6.71 -2.39 -0.02 0.89 16 31 H 0.04 1.58 3.27 -2.38 -0.01 1.57 16 32 H 0.06 2.20 6.54 -2.38 -0.02 2.19 16 33 H 0.05 2.18 6.63 -2.39 -0.02 2.17 16 34 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 35 H 0.03 1.02 6.63 -2.39 -0.02 1.00 16 36 H 0.06 2.20 8.12 -2.39 -0.02 2.18 16 Total: -1.00 -64.22 265.73 -1.36 -65.59 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.21 Total: 13.26 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: 3.95 Total: -21.62 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -7.19 Total: -104.49 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.67 Total: 47.26 kcal Total: -64.22 -1.36 -65.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226718597.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.037 kcal (2) G-P(sol) polarization free energy of solvation -64.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds