Wall clock time and date at job start Mon Mar 30 2020 03:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46850 * 2 1 4 4 N 1.46901 * 109.47434 * 239.99349 * 2 1 3 5 5 C 1.53006 * 109.47034 * 119.99517 * 2 1 3 6 6 H 1.08995 * 110.87257 * 62.39708 * 5 2 1 7 7 C 1.55139 * 110.99133 * 298.54976 * 5 2 1 8 8 C 1.54324 * 103.01646 * 206.21946 * 7 5 2 9 9 N 1.47442 * 107.23349 * 22.28093 * 8 7 5 10 10 C 1.46901 * 110.99771 * 123.26208 * 9 8 7 11 11 H 1.09003 * 109.47075 * 303.00432 * 10 9 8 12 12 C 1.53002 * 109.47416 * 63.00184 * 10 9 8 13 13 C 1.50700 * 109.47167 * 183.00016 * 10 9 8 14 14 H 1.08001 * 119.99856 * 0.02562 * 13 10 9 15 15 C 1.37873 * 120.00196 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99929 * 0.02562 * 15 13 10 17 17 Si 1.86795 * 119.99912 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47483 * 60.00470 * 17 15 13 19 19 H 1.48509 * 109.47043 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47295 * 299.99904 * 17 15 13 21 21 C 1.47843 * 108.56833 * 0.99308 * 9 8 7 22 22 H 1.08995 * 109.47052 * 60.00238 * 1 2 3 23 23 H 1.09004 * 109.46850 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47118 * 300.00088 * 1 2 3 25 25 H 1.00891 * 111.00333 * 296.04887 * 4 2 1 26 26 H 1.00904 * 110.99417 * 60.00316 * 4 2 1 27 27 H 1.08997 * 110.71016 * 87.83373 * 7 5 2 28 28 H 1.09004 * 110.85277 * 324.66401 * 7 5 2 29 29 H 1.09002 * 109.88140 * 262.87344 * 8 7 5 30 30 H 1.08995 * 109.88917 * 141.69227 * 8 7 5 31 31 H 1.08992 * 109.47308 * 175.87011 * 12 10 9 32 32 H 1.09001 * 109.47024 * 295.86586 * 12 10 9 33 33 H 1.08998 * 109.46955 * 55.85884 * 12 10 9 34 34 H 0.96998 * 119.99913 * 179.97438 * 16 15 13 35 35 H 1.08993 * 110.37641 * 94.73576 * 21 9 8 36 36 H 1.09004 * 110.37063 * 217.07836 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1993 5 6 2.0400 -0.7212 1.2494 6 1 1.7246 -1.7645 1.2515 7 6 1.5726 0.0034 2.5390 8 6 2.6555 -0.3847 3.5677 9 7 3.8616 -0.7653 2.8098 10 6 5.0158 0.0487 3.2136 11 1 4.7822 1.1044 3.0751 12 6 5.3348 -0.2139 4.6868 13 6 6.2088 -0.3169 2.3685 14 1 6.1184 -1.0776 1.6072 15 6 7.4152 0.3205 2.5664 16 7 7.5251 1.2471 3.4932 17 14 8.8936 -0.1323 1.5183 18 1 8.5837 0.1227 0.0886 19 1 10.0605 0.6906 1.9267 20 1 9.2124 -1.5703 1.7069 21 6 3.5804 -0.6070 1.3670 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.7504 -1.6649 -1.1908 26 1 1.6962 -0.2351 -2.0385 27 1 0.5945 -0.3610 2.8530 28 1 1.5509 1.0832 2.3913 29 1 2.3124 -1.2283 4.1668 30 1 2.8759 0.4657 4.2129 31 1 6.2347 0.3335 4.9669 32 1 4.5003 0.1188 5.3041 33 1 5.4963 -1.2811 4.8389 34 1 8.3740 1.6953 3.6327 35 1 3.9161 0.3702 1.0199 36 1 4.0643 -1.4000 0.7968 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227210892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:34 Heat of formation + Delta-G solvation = -6.712929 kcal Electronic energy + Delta-G solvation = -14883.298519 eV Core-core repulsion = 12594.694499 eV Total energy + Delta-G solvation = -2288.604020 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.74103 -35.79495 -33.27665 -30.90127 -28.78670 -28.27223 -26.97214 -24.95024 -21.98634 -21.43127 -19.73699 -18.90363 -16.35634 -15.93409 -15.06417 -14.85945 -14.28148 -13.77710 -13.49170 -12.92020 -12.73875 -12.59963 -12.40712 -11.80592 -11.57225 -11.09218 -11.03260 -10.82431 -10.63150 -10.45562 -10.29238 -10.21937 -9.97539 -9.86045 -9.61109 -8.80747 -8.53729 -8.33418 -7.02862 -5.92698 -3.96699 3.39063 3.42032 3.46257 4.48940 4.59618 4.83048 5.12123 5.27986 5.33932 5.38905 5.41297 5.52115 5.66930 5.89601 5.95759 5.98938 6.16395 6.25295 6.35112 6.45243 6.67892 6.87697 6.92026 6.98926 7.16834 7.22701 7.28613 7.56287 7.60385 7.81286 7.93043 8.29662 8.45074 8.70068 9.10707 9.68255 11.14050 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034577 B = 0.008926 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.584161 B = 3136.140869 C = 3741.985740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.097 3.903 3 H 0.079 0.921 4 N -0.839 5.839 5 C -0.094 4.094 6 H 0.073 0.927 7 C -0.133 4.133 8 C 0.042 3.958 9 N -0.531 5.531 10 C 0.209 3.791 11 H -0.003 1.003 12 C -0.132 4.132 13 C -0.499 4.499 14 H 0.061 0.939 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.277 1.277 21 C 0.082 3.918 22 H 0.049 0.951 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.337 0.663 26 H 0.335 0.665 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.005 0.995 33 H 0.032 0.968 34 H 0.260 0.740 35 H 0.044 0.956 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.354 -1.915 -4.852 13.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.015 4.015 3 H 0.097 0.903 4 N -0.367 5.367 5 C -0.114 4.114 6 H 0.091 0.909 7 C -0.172 4.172 8 C -0.086 4.086 9 N -0.256 5.256 10 C 0.102 3.898 11 H 0.014 0.986 12 C -0.191 4.191 13 C -0.538 4.538 14 H 0.080 0.920 15 C -0.143 4.143 16 N -0.536 5.536 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.045 4.045 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.150 0.850 26 H 0.148 0.852 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.024 0.976 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.318 -2.111 -4.388 12.321 hybrid contribution -0.428 0.528 -0.836 1.077 sum -11.746 -1.583 -5.224 12.952 Atomic orbital electron populations 1.22656 0.98314 1.01608 1.01856 1.21434 0.91285 0.98495 0.90284 0.90296 1.58813 1.67600 1.06479 1.03842 1.22378 0.97853 0.98725 0.92418 0.90905 1.22803 0.98719 0.99848 0.95875 1.22749 0.90821 0.98855 0.96221 1.63708 1.03470 1.55543 1.02834 1.19400 0.87217 0.89923 0.93241 0.98564 1.21826 1.00621 0.99992 0.96623 1.21137 0.94181 1.20697 1.17786 0.92041 1.24928 0.98766 0.95101 0.95532 1.69885 1.25498 1.25545 1.32669 0.86594 0.81929 0.78400 0.80692 1.20286 1.21449 1.20267 1.22616 0.91166 1.00773 0.89992 0.93221 0.92943 0.91982 0.85039 0.85237 0.92036 0.92032 0.92232 0.93320 0.89592 0.97551 0.94876 0.93049 0.93746 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.28 37.16 0.34 -1.61 16 2 C 0.10 1.28 2.89 -67.71 -0.20 1.09 16 3 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 4 N -0.84 -10.44 9.07 -4.66 -0.04 -10.48 16 5 C -0.09 -1.48 2.71 -88.48 -0.24 -1.72 16 6 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 7 C -0.13 -2.06 5.35 -24.91 -0.13 -2.20 16 8 C 0.04 0.80 6.21 -2.83 -0.02 0.78 16 9 N -0.53 -12.00 5.02 -224.68 -1.13 -13.13 16 10 C 0.21 5.50 1.61 -68.86 -0.11 5.38 16 11 H 0.00 -0.09 8.14 -51.93 -0.42 -0.51 16 12 C -0.13 -3.38 8.87 37.16 0.33 -3.05 16 13 C -0.50 -14.22 7.99 -34.44 -0.28 -14.49 16 14 H 0.06 1.76 7.04 -52.49 -0.37 1.39 16 15 C 0.06 1.63 5.29 -17.82 -0.09 1.54 16 16 N -0.90 -26.27 11.30 55.43 0.63 -25.64 16 17 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C 0.08 1.70 4.88 -2.30 -0.01 1.68 16 22 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.66 7.32 -51.93 -0.38 0.28 16 25 H 0.34 3.77 8.98 -39.30 -0.35 3.42 16 26 H 0.34 3.46 9.04 -39.29 -0.36 3.11 16 27 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 28 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.96 6.54 -51.93 -0.34 0.62 16 31 H 0.09 2.39 5.97 -51.93 -0.31 2.08 16 32 H 0.01 0.13 6.81 -51.93 -0.35 -0.22 16 33 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.04 1.01 7.61 -51.93 -0.40 0.62 16 36 H 0.07 1.53 7.81 -51.93 -0.41 1.13 16 LS Contribution 279.86 15.07 4.22 4.22 Total: -1.00 -29.62 279.86 -7.94 -37.56 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.19 Total: 3.07 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.40 Total: -12.60 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.54 Total: -49.25 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.62 -7.94 -37.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227210892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.852 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds