Wall clock time and date at job start Mon Mar 30 2020 03:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46850 * 2 1 4 4 N 1.46901 * 109.47434 * 239.99349 * 2 1 3 5 5 C 1.53006 * 109.47034 * 119.99517 * 2 1 3 6 6 H 1.08995 * 110.87257 * 62.39708 * 5 2 1 7 7 C 1.55139 * 110.99133 * 298.54976 * 5 2 1 8 8 C 1.54324 * 103.01646 * 206.21946 * 7 5 2 9 9 N 1.47442 * 107.23349 * 22.28093 * 8 7 5 10 10 C 1.46901 * 110.99771 * 123.26208 * 9 8 7 11 11 H 1.09003 * 109.47075 * 303.00432 * 10 9 8 12 12 C 1.53002 * 109.47416 * 63.00184 * 10 9 8 13 13 C 1.50700 * 109.47167 * 183.00016 * 10 9 8 14 14 H 1.08001 * 119.99856 * 0.02562 * 13 10 9 15 15 C 1.37873 * 120.00196 * 179.97438 * 13 10 9 16 16 N 1.31516 * 119.99929 * 0.02562 * 15 13 10 17 17 Si 1.86795 * 119.99912 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47483 * 60.00470 * 17 15 13 19 19 H 1.48509 * 109.47043 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47295 * 299.99904 * 17 15 13 21 21 C 1.47843 * 108.56833 * 0.99308 * 9 8 7 22 22 H 1.08995 * 109.47052 * 60.00238 * 1 2 3 23 23 H 1.09004 * 109.46850 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47118 * 300.00088 * 1 2 3 25 25 H 1.00891 * 111.00333 * 296.04887 * 4 2 1 26 26 H 1.00904 * 110.99417 * 60.00316 * 4 2 1 27 27 H 1.08997 * 110.71016 * 87.83373 * 7 5 2 28 28 H 1.09004 * 110.85277 * 324.66401 * 7 5 2 29 29 H 1.09002 * 109.88140 * 262.87344 * 8 7 5 30 30 H 1.08995 * 109.88917 * 141.69227 * 8 7 5 31 31 H 1.08992 * 109.47308 * 175.87011 * 12 10 9 32 32 H 1.09001 * 109.47024 * 295.86586 * 12 10 9 33 33 H 1.08998 * 109.46955 * 55.85884 * 12 10 9 34 34 H 0.96998 * 119.99913 * 179.97438 * 16 15 13 35 35 H 1.08993 * 110.37641 * 94.73576 * 21 9 8 36 36 H 1.09004 * 110.37063 * 217.07836 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6926 -1.1993 5 6 2.0400 -0.7212 1.2494 6 1 1.7246 -1.7645 1.2515 7 6 1.5726 0.0034 2.5390 8 6 2.6555 -0.3847 3.5677 9 7 3.8616 -0.7653 2.8098 10 6 5.0158 0.0487 3.2136 11 1 4.7822 1.1044 3.0751 12 6 5.3348 -0.2139 4.6868 13 6 6.2088 -0.3169 2.3685 14 1 6.1184 -1.0776 1.6072 15 6 7.4152 0.3205 2.5664 16 7 7.5251 1.2471 3.4932 17 14 8.8936 -0.1323 1.5183 18 1 8.5837 0.1227 0.0886 19 1 10.0605 0.6906 1.9267 20 1 9.2124 -1.5703 1.7069 21 6 3.5804 -0.6070 1.3670 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.7504 -1.6649 -1.1908 26 1 1.6962 -0.2351 -2.0385 27 1 0.5945 -0.3610 2.8530 28 1 1.5509 1.0832 2.3913 29 1 2.3124 -1.2283 4.1668 30 1 2.8759 0.4657 4.2129 31 1 6.2347 0.3335 4.9669 32 1 4.5003 0.1188 5.3041 33 1 5.4963 -1.2811 4.8389 34 1 8.3740 1.6953 3.6327 35 1 3.9161 0.3702 1.0199 36 1 4.0643 -1.4000 0.7968 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227210892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:34 Heat of formation + Delta-G solvation = -28.575135 kcal Electronic energy + Delta-G solvation = -14884.246535 eV Core-core repulsion = 12594.694499 eV Total energy + Delta-G solvation = -2289.552036 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.24633 -37.19635 -35.15494 -32.70310 -30.18310 -29.70657 -28.42374 -27.07451 -23.37430 -23.07827 -21.20002 -20.54104 -18.42819 -17.32126 -16.73780 -16.35590 -15.86390 -15.15030 -14.95310 -14.48226 -14.12955 -14.05399 -13.87568 -13.44737 -13.00860 -12.85996 -12.70552 -12.59735 -12.34855 -12.18428 -12.10111 -11.68832 -11.64261 -11.40295 -11.39745 -10.92216 -10.52091 -9.49184 -8.87659 -8.11630 -6.23664 1.40656 1.43151 1.50796 2.42379 3.15756 3.40806 3.55288 3.87940 3.94530 4.15143 4.33193 4.42349 4.45378 4.62090 4.78490 4.80209 4.87751 4.94931 5.00422 5.03968 5.05835 5.12632 5.19360 5.25662 5.37680 5.47926 5.53049 5.73154 5.80346 6.25905 6.35757 6.43036 6.71562 6.75848 6.91772 7.45746 8.94207 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034577 B = 0.008926 C = 0.007481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.584161 B = 3136.140869 C = 3741.985740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.101 3.899 3 H 0.059 0.941 4 N -0.854 5.854 5 C -0.080 4.080 6 H 0.085 0.915 7 C -0.122 4.122 8 C 0.035 3.965 9 N -0.542 5.542 10 C 0.215 3.785 11 H -0.041 1.041 12 C -0.121 4.121 13 C -0.519 4.519 14 H 0.052 0.948 15 C 0.010 3.990 16 N -0.921 5.921 17 Si 0.959 3.041 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.271 1.271 21 C 0.085 3.915 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.346 0.654 26 H 0.348 0.652 27 H 0.098 0.902 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.061 0.939 32 H 0.027 0.973 33 H 0.031 0.969 34 H 0.262 0.738 35 H 0.011 0.989 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.845 -2.718 -5.566 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.011 4.011 3 H 0.078 0.922 4 N -0.384 5.384 5 C -0.100 4.100 6 H 0.103 0.897 7 C -0.161 4.161 8 C -0.093 4.093 9 N -0.267 5.267 10 C 0.107 3.893 11 H -0.024 1.024 12 C -0.179 4.179 13 C -0.558 4.558 14 H 0.071 0.929 15 C -0.188 4.188 16 N -0.561 5.561 17 Si 0.785 3.215 18 H -0.198 1.198 19 H -0.206 1.206 20 H -0.196 1.196 21 C -0.043 4.043 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.159 0.841 26 H 0.162 0.838 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.030 0.970 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.832 -2.921 -5.109 14.117 hybrid contribution 0.029 0.776 -0.605 0.984 sum -12.804 -2.145 -5.713 14.184 Atomic orbital electron populations 1.22532 0.95465 1.02630 1.02774 1.21280 0.93354 0.97009 0.89411 0.92240 1.58743 1.68292 1.07213 1.04200 1.22302 0.93709 0.99933 0.94038 0.89660 1.22754 0.99104 0.99926 0.94318 1.22872 0.90497 0.99054 0.96847 1.63617 1.04101 1.54690 1.04298 1.19175 0.88328 0.88251 0.93501 1.02373 1.21642 1.00306 0.99359 0.96569 1.21383 0.95467 1.20765 1.18164 0.92940 1.25723 1.01492 0.94938 0.96679 1.70008 1.26225 1.26175 1.33735 0.85591 0.78527 0.78373 0.79043 1.19835 1.20580 1.19604 1.22514 0.95015 0.98143 0.88602 0.91834 0.91800 0.91622 0.84065 0.83794 0.88364 0.92143 0.90578 0.94648 0.92040 0.95410 0.95033 0.92882 0.97022 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 9.28 71.98 0.67 -2.43 16 2 C 0.10 2.51 2.89 44.92 0.13 2.64 16 3 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16 4 N -0.85 -19.91 9.07 -168.66 -1.53 -21.44 16 5 C -0.08 -2.39 2.71 -9.41 -0.03 -2.41 16 6 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 7 C -0.12 -3.50 5.35 31.78 0.17 -3.33 16 8 C 0.04 1.30 6.21 86.65 0.54 1.84 16 9 N -0.54 -24.77 5.02 -864.74 -4.34 -29.12 16 10 C 0.21 11.67 1.61 44.17 0.07 11.74 16 11 H -0.04 -2.49 8.14 -2.39 -0.02 -2.51 16 12 C -0.12 -6.26 8.87 71.98 0.64 -5.63 16 13 C -0.52 -30.38 7.99 25.60 0.20 -30.17 16 14 H 0.05 3.09 7.04 -2.91 -0.02 3.07 16 15 C 0.01 0.58 5.29 84.65 0.45 1.02 16 16 N -0.92 -55.11 11.30 21.45 0.24 -54.86 16 17 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 18 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 C 0.09 3.56 4.88 86.77 0.42 3.99 16 22 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 1.14 7.32 -2.39 -0.02 1.12 16 25 H 0.35 7.01 8.98 -89.70 -0.81 6.20 16 26 H 0.35 6.56 9.04 -89.69 -0.81 5.75 16 27 H 0.10 2.16 8.11 -2.39 -0.02 2.14 16 28 H 0.06 1.76 8.04 -2.39 -0.02 1.74 16 29 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.03 1.39 6.54 -2.39 -0.02 1.37 16 31 H 0.06 3.49 5.97 -2.39 -0.01 3.48 16 32 H 0.03 1.27 6.81 -2.39 -0.02 1.25 16 33 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 35 H 0.01 0.55 7.61 -2.39 -0.02 0.53 16 36 H 0.05 2.36 7.81 -2.38 -0.02 2.34 16 Total: -1.00 -65.01 279.86 -0.90 -65.91 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -0.56 Total: 14.64 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 3.27 Total: -22.75 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -5.63 Total: -105.42 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -65.01 -0.90 -65.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227210892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.332 kcal (2) G-P(sol) polarization free energy of solvation -65.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds